BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00004123
         (2423 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus...  1384   0.0  
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  1287   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  1271   0.0  
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...  1262   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1137   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1137   0.0  
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]  1127   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1055   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1038   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1038   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1033   0.0  
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun...  1029   0.0  
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...  1019   0.0  
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...  1019   0.0  
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...  1018   0.0  
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...  1016   0.0  
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...  1016   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...  1010   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...  1005   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...   995   0.0  

>gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus guttatus]
          Length = 1719

 Score = 1384 bits (3582), Expect = 0.0
 Identities = 673/805 (83%), Positives = 736/805 (91%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWE EA  CSYI DIQRQ  K  G   G+SMFFLET+LVPPIRFRP AKGGDSVMEH  T
Sbjct: 336  LWEKEASFCSYISDIQRQKCKPFGNKTGYSMFFLETVLVPPIRFRPPAKGGDSVMEHPQT 395

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LLGKVLQ+NIALGNAH N AE S+II RWM+LQQSINV +DSKTA S +QK+   GICQ
Sbjct: 396  VLLGKVLQSNIALGNAHVN-AEKSKIISRWMELQQSINVYFDSKTATSLAQKDSIAGICQ 454

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FALKLTYPERVTPWNA K
Sbjct: 455  FLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALKLTYPERVTPWNAAK 514

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            LR AV+NGPDIHPGAT Y DSV+  +LP ++KMR+A+SRKLPSSR VV+QSGK  + EFE
Sbjct: 515  LRGAVVNGPDIHPGATTYVDSVTIVKLPPSQKMRVAISRKLPSSRGVVTQSGKFDDLEFE 574

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
            GK V RHLQDGDIVLVNRQPTLHKPSIMAH+VRVL GERTLRMHYANCSSYNADFDGDEI
Sbjct: 575  GKTVHRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLHGERTLRMHYANCSSYNADFDGDEI 634

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIV AVL+TMKNTF+ RSEF+
Sbjct: 635  NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFVNRSEFN 694

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLYGSGVFA+GPGS P + S KV+++D+EG+VES+LPA+WKPEPLWTGKQVITALLNHI
Sbjct: 695  QLLYGSGVFASGPGSLPKNNSRKVTLIDTEGVVESVLPAIWKPEPLWTGKQVITALLNHI 754

Query: 1162 TRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNAEHDLLIWKNELVRGVIDKAQFGKY 983
            TRGCAP TV+NQGK+PKNYF   SY  GEED+D NAEH+LL+WKNELVRGVIDKAQFGK+
Sbjct: 755  TRGCAPFTVENQGKIPKNYFFGNSYTRGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKF 814

Query: 982  GLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEGED 803
            GLVHTVQELYG++SAGI LSALSR+FT+FLQ HGFTCGVDDLIILP++D QRKEKLEGED
Sbjct: 815  GLVHTVQELYGASSAGIFLSALSRVFTLFLQIHGFTCGVDDLIILPDYDDQRKEKLEGED 874

Query: 802  VGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQI 623
            VGE VHCDFVKFKPGQIGP+ELQLEIEK IC+DRESATA+LDMKMKNKL ++LT EGSQI
Sbjct: 875  VGEVVHCDFVKFKPGQIGPDELQLEIEKVICTDRESATASLDMKMKNKLNSKLTREGSQI 934

Query: 622  LKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLP 443
            LKHLLT GLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLP
Sbjct: 935  LKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLP 994

Query: 442  SFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 263
            SFPPWD+T+RAGGFITDRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNL
Sbjct: 995  SFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNL 1054

Query: 262  ESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFN 83
            ESLKVCYDYTVRD+DGSIVQFYYGEDG+DVH+TSFL NFKAL+DNRETI QKFQ+ REFN
Sbjct: 1055 ESLKVCYDYTVRDADGSIVQFYYGEDGIDVHRTSFLNNFKALQDNRETICQKFQHKREFN 1114

Query: 82   SYISELPEGLEEEARRFIHETHGNT 8
            SYI +LPEGLEEEA+RFI ET   +
Sbjct: 1115 SYIKKLPEGLEEEAKRFIQETQNKS 1139


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 1287 bits (3331), Expect = 0.0
 Identities = 619/801 (77%), Positives = 714/801 (89%), Gaps = 4/801 (0%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENEAPLC++ CDIQ Q+   SG + G SMFFL++ILVPPI+FRP AKGGDS+MEH HT
Sbjct: 312  LWENEAPLCTFFCDIQSQHHNTSGKVAGPSMFFLDSILVPPIKFRPPAKGGDSIMEHPHT 371

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LLGKV+QANIALGNAH N A  S+II R MDLQQS+NVL+DSKTA+   QK+   GICQ
Sbjct: 372  VLLGKVVQANIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQ 431

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVNFACRSVISPDPYL+VNEIGIPP+FAL+LTYPER+TPWNA K
Sbjct: 432  MLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFALRLTYPERLTPWNAVK 491

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            +R AVINGP+ HPGA ++ D +++ +LP+NKKMR+A+SRKLPSSR  V+QSG+  E+EFE
Sbjct: 492  MRDAVINGPENHPGAVSFADRIATVKLPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFE 551

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
            GK+V RHLQDGD+VLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANCS+YNADFDGDE+
Sbjct: 552  GKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 611

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIV AV++TMKNTFLT  EF+
Sbjct: 612  NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLTLHEFN 671

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLYGSGVFAAGP    G+ S KVSVVD EG+V+++LPAVWKP+PLWTGKQVITALLNH+
Sbjct: 672  QLLYGSGVFAAGPAPTSGNHSNKVSVVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHL 731

Query: 1162 TRGCAPCTVKNQGKVPKNYFASAS----YKNGEEDQDHNAEHDLLIWKNELVRGVIDKAQ 995
            T+GCAPCTVKN+GK+P  YF S S    Y++ EE +D  AE++ LIWKNELVRGVIDKAQ
Sbjct: 732  TKGCAPCTVKNKGKIPYPYFLSESRLVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQ 791

Query: 994  FGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKL 815
            FGK+GLVHT+QELYGSN AGILLSALSRLFTIFLQ HGFTCGVDDL+ILP++D++RKE+L
Sbjct: 792  FGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGVDDLVILPHYDIRRKEEL 851

Query: 814  EGEDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTE 635
            EG+DVGEE HCDFVKFK G+IGP ELQLEIEKA+ S++E+ATA LDMKMKNKL N+    
Sbjct: 852  EGDDVGEEAHCDFVKFKRGEIGPLELQLEIEKAMSSNKEAATAALDMKMKNKLANK---- 907

Query: 634  GSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSG 455
            GSQ  K LL KGLLKPFP+NCI++MT TGAKGSTVNFQQIS+YLGQQELEGKRVPRMVSG
Sbjct: 908  GSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSG 967

Query: 454  KTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 275
            KTLP FPPWD  +RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL
Sbjct: 968  KTLPCFPPWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1027

Query: 274  IKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNH 95
            IKNLESLKVCYDYTVRD+DGSI+QFYYGEDGVDVH+TSFLKNFKAL++N+ETI QK ++ 
Sbjct: 1028 IKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHG 1087

Query: 94   REFNSYISELPEGLEEEARRF 32
            R+ NSYI +LP+GLEE+ + F
Sbjct: 1088 RKLNSYIEKLPDGLEEKVKHF 1108


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 1271 bits (3288), Expect = 0.0
 Identities = 611/801 (76%), Positives = 707/801 (88%), Gaps = 4/801 (0%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENEAPLC++ CDIQ Q+   SG + G SMFFL++ILVPP++FRP AKGGDS+MEH HT
Sbjct: 312  LWENEAPLCTFFCDIQSQHRNTSGKVAGPSMFFLDSILVPPVKFRPPAKGGDSIMEHPHT 371

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LLGKV+QANIALGNAH N A  S+II R MDLQQS+NVL+DSKTA+   QK+   GICQ
Sbjct: 372  VLLGKVIQANIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQ 431

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVNFACRSVISPDPYL+VNEIGIPP+FA +LTYPER+TPWNA K
Sbjct: 432  MLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFASRLTYPERLTPWNAVK 491

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            +R AVINGP+ HPGA ++ D +++ +LP+NKKMR+A+SRKLPSSR  V+QSG+  E+EFE
Sbjct: 492  MRDAVINGPENHPGAISFADRIATVKLPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFE 551

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
            GK+V RHLQDGD+VLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANCS+YNADFDGDE+
Sbjct: 552  GKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 611

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIV AV++TMKNTFL+  EF+
Sbjct: 612  NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLSLHEFN 671

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLYGSGVFAAGP    G+ S KVS+VD EG+V+++LPAVWKP+PLWTGKQVITALLNH+
Sbjct: 672  QLLYGSGVFAAGPAPTSGNHSNKVSIVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHL 731

Query: 1162 TRGCAPCTVKNQGKVPKNYFASAS----YKNGEEDQDHNAEHDLLIWKNELVRGVIDKAQ 995
            T GC PCTVKN+GK+P  YF S S    Y++ EE +D  AE++ LIWKNELVRGVIDKAQ
Sbjct: 732  TNGCPPCTVKNKGKIPYAYFLSESRLVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQ 791

Query: 994  FGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKL 815
            FGK+GLVHT+QELYGSN AGILLSALSRLFTIFLQ HGFTCG+DDL+ILP++D++RKE+L
Sbjct: 792  FGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEEL 851

Query: 814  EGEDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTE 635
            EG+DVGEE HCDFVKFK G+IGP ELQLEIEKAI S++E ATA LDMKMKNKL N+    
Sbjct: 852  EGDDVGEEAHCDFVKFKRGEIGPLELQLEIEKAISSNKEVATAALDMKMKNKLANK---- 907

Query: 634  GSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSG 455
            GSQ  K LL KGLLKPFP+NCI++MT TGAKGSTVNFQQIS+YLGQQELEGKRVPRMVSG
Sbjct: 908  GSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSG 967

Query: 454  KTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 275
            KTLP FP WD  +RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL
Sbjct: 968  KTLPCFPAWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1027

Query: 274  IKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNH 95
            IKNLESLKVCYDYTVRD+DGSI+QFYYGEDGVDVH+TSFLKNFKAL++N+ETI QK ++ 
Sbjct: 1028 IKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHG 1087

Query: 94   REFNSYISELPEGLEEEARRF 32
             + NSYI +LP+GL E+ + F
Sbjct: 1088 CKLNSYIEKLPDGLGEKVKHF 1108


>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score = 1262 bits (3266), Expect = 0.0
 Identities = 625/800 (78%), Positives = 698/800 (87%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENE  LCS+ICDIQ+Q  K+SG    +S+FF ETILV PI+FR   +GG+SVMEH HT
Sbjct: 282  LWENEESLCSFICDIQQQQGKLSGNRMDYSIFFFETILVNPIKFRAPTRGGNSVMEHPHT 341

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LLGKVL++NIAL NA     + S+ I  WM+LQQSINVL+D K+  S S+K G  GICQ
Sbjct: 342  VLLGKVLESNIALRNA-----QPSKFISHWMELQQSINVLFDGKS--STSKKAGVSGICQ 394

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWNA K
Sbjct: 395  LLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNATK 454

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            LR+AV+NGPDIHPGAT Y DSV++ +LP NKK R+A+SRKLPSSR   ++ G+  + +FE
Sbjct: 455  LRNAVVNGPDIHPGATTYIDSVATMKLPLNKKARVALSRKLPSSRGATAEVGE-SQLDFE 513

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
            GK+V RHLQDGDIVLVNRQPTLHKPSIMAH+VRVL GERTLRMHYANCSSYNADFDGDEI
Sbjct: 514  GKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGERTLRMHYANCSSYNADFDGDEI 573

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHIVAAVL+T+K TFLT SEF+
Sbjct: 574  NVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVAAVLLTLKRTFLTCSEFN 633

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLYGSGVFA G  S+  + S KVS    +GL+  ILPA+WKPEPLWTGKQVI+ALLNHI
Sbjct: 634  QLLYGSGVFALGRHSYVSNSSQKVSGHAPDGLINPILPAIWKPEPLWTGKQVISALLNHI 693

Query: 1162 TRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNAEHDLLIWKNELVRGVIDKAQFGKY 983
            TRG APC VKNQ K+P  YF        +ED+D NAE++ L+WKNELVRGVIDKAQFGK+
Sbjct: 694  TRGFAPCIVKNQTKLPSTYFTDNPAME-DEDEDQNAENNFLVWKNELVRGVIDKAQFGKF 752

Query: 982  GLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEGED 803
            GLVHTVQELYGS SAG LL+A SRLFT+FLQ HGFTCGVDDL+ILP++D++RKEKLE ED
Sbjct: 753  GLVHTVQELYGSESAGNLLTAFSRLFTMFLQIHGFTCGVDDLMILPDYDVKRKEKLEQED 812

Query: 802  VGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQI 623
            VGEEVHCDF+ FKPGQIG EELQLEIEKAIC DRESATA LDMKMKNKLT +LTTEGSQ+
Sbjct: 813  VGEEVHCDFINFKPGQIGREELQLEIEKAICRDRESATALLDMKMKNKLTMKLTTEGSQV 872

Query: 622  LKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLP 443
            LKHLLT GLLKPFP+NCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLP
Sbjct: 873  LKHLLTDGLLKPFPQNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLP 932

Query: 442  SFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 263
            SFPPWD+ +RAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNL
Sbjct: 933  SFPPWDFASRAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNL 992

Query: 262  ESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFN 83
            ESLKV YDYTVRD+DGSI+QF YGEDGVD HKTSFLKNFKAL +N+ETI QKFQN  +FN
Sbjct: 993  ESLKVGYDYTVRDADGSIIQFCYGEDGVDAHKTSFLKNFKALSNNQETIQQKFQNKHQFN 1052

Query: 82   SYISELPEGLEEEARRFIHE 23
             YI +LPEGLEEEA  FI +
Sbjct: 1053 FYIKKLPEGLEEEAMHFIQK 1072


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1137 bits (2942), Expect = 0.0
 Identities = 568/813 (69%), Positives = 667/813 (82%), Gaps = 15/813 (1%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENEA LCS+I DI ++    SG   G+SMFFLETILVPPI+FRP +KG  SVMEH  T
Sbjct: 305  LWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQT 364

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LLGKVLQANIALGNAH N++E S+II RWMDLQQSINVL+D KTA  Q Q++   GICQ
Sbjct: 365  VLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQ 424

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPE+VTPWN  K
Sbjct: 425  LLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVK 484

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            LR A+INGP+IHPGAT+Y D +S+ +L  NKKMRI++SRKLPSSR VV+Q G+  ++EFE
Sbjct: 485  LRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFE 544

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
            GKIV RHLQDGDIVLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANCS+YNADFDGDE+
Sbjct: 545  GKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 604

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISRAEAYNIVNAN QYIVP++GD +RGLIQDHIV+AVL+T K+TFLTR +++
Sbjct: 605  NVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYN 664

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLY SG+ ++G GS  G    KVSV+DSE  ++ +LPA+WKPEPLW+GKQVITA+LNHI
Sbjct: 665  QLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHI 723

Query: 1162 TRGCAPCTVKNQGKVPKNYFAS-----ASYKNGEEDQDH---------NAEHDLLIWKNE 1025
            TRG  P T +  GK+P+ YF S      S K  +   D          + E+ LLI KNE
Sbjct: 724  TRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNE 783

Query: 1024 LVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILP 845
            LVRGVIDKAQF KYGLVH VQELYGSN+AGILLS LSRLFT+FLQ HGFTCGVDDL+I P
Sbjct: 784  LVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISP 843

Query: 844  NFDLQRKEKLE-GEDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKM 668
            N+D+ RK +L+  E++GE VHC F+    G+I P +LQ+E+EK I S+ E+A   LD  M
Sbjct: 844  NYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMM 903

Query: 667  KNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQEL 488
            KN+L N LT   S++ K LL KGL+KPFPKNC+S+MTTTGAKGSTVNF QIS++LGQQ+L
Sbjct: 904  KNEL-NELT---SKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDL 959

Query: 487  EGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVK 308
            EGKRVPRMVSGKTLP FPPWD  ARAGGFI+DRFL+GL PQEYYFHCMAGREGLVDTAVK
Sbjct: 960  EGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVK 1019

Query: 307  TSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDN 128
            TSRSGYLQRCLIKNLE LKVCYDYTVRDSDGSIVQF YG+DGVDVH+TSF+  F+AL  N
Sbjct: 1020 TSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVN 1079

Query: 127  RETIWQKFQNHREFNSYISELPEGLEEEARRFI 29
             E + +KF    +FN YI +LP+ L ++ ++FI
Sbjct: 1080 EEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFI 1112


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1137 bits (2942), Expect = 0.0
 Identities = 568/813 (69%), Positives = 667/813 (82%), Gaps = 15/813 (1%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENEA LCS+I DI ++    SG   G+SMFFLETILVPPI+FRP +KG  SVMEH  T
Sbjct: 376  LWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQT 435

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LLGKVLQANIALGNAH N++E S+II RWMDLQQSINVL+D KTA  Q Q++   GICQ
Sbjct: 436  VLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQ 495

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPE+VTPWN  K
Sbjct: 496  LLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVK 555

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            LR A+INGP+IHPGAT+Y D +S+ +L  NKKMRI++SRKLPSSR VV+Q G+  ++EFE
Sbjct: 556  LRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFE 615

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
            GKIV RHLQDGDIVLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANCS+YNADFDGDE+
Sbjct: 616  GKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 675

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISRAEAYNIVNAN QYIVP++GD +RGLIQDHIV+AVL+T K+TFLTR +++
Sbjct: 676  NVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYN 735

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLY SG+ ++G GS  G    KVSV+DSE  ++ +LPA+WKPEPLW+GKQVITA+LNHI
Sbjct: 736  QLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHI 794

Query: 1162 TRGCAPCTVKNQGKVPKNYFAS-----ASYKNGEEDQDH---------NAEHDLLIWKNE 1025
            TRG  P T +  GK+P+ YF S      S K  +   D          + E+ LLI KNE
Sbjct: 795  TRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNE 854

Query: 1024 LVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILP 845
            LVRGVIDKAQF KYGLVH VQELYGSN+AGILLS LSRLFT+FLQ HGFTCGVDDL+I P
Sbjct: 855  LVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISP 914

Query: 844  NFDLQRKEKLE-GEDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKM 668
            N+D+ RK +L+  E++GE VHC F+    G+I P +LQ+E+EK I S+ E+A   LD  M
Sbjct: 915  NYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMM 974

Query: 667  KNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQEL 488
            KN+L N LT   S++ K LL KGL+KPFPKNC+S+MTTTGAKGSTVNF QIS++LGQQ+L
Sbjct: 975  KNEL-NELT---SKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDL 1030

Query: 487  EGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVK 308
            EGKRVPRMVSGKTLP FPPWD  ARAGGFI+DRFL+GL PQEYYFHCMAGREGLVDTAVK
Sbjct: 1031 EGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVK 1090

Query: 307  TSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDN 128
            TSRSGYLQRCLIKNLE LKVCYDYTVRDSDGSIVQF YG+DGVDVH+TSF+  F+AL  N
Sbjct: 1091 TSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVN 1150

Query: 127  RETIWQKFQNHREFNSYISELPEGLEEEARRFI 29
             E + +KF    +FN YI +LP+ L ++ ++FI
Sbjct: 1151 EEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFI 1183


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score = 1127 bits (2914), Expect = 0.0
 Identities = 568/831 (68%), Positives = 668/831 (80%), Gaps = 33/831 (3%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENEA LCS+I DI ++    SG   G+SMFFLETILVPPI+FRP +KG  SVMEH  T
Sbjct: 424  LWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQT 483

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LLGKVLQANIALGNAH N++E S+II RWMDLQQSINVL+D KTA  Q Q++   GICQ
Sbjct: 484  VLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQ 543

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPE+VTPWN  K
Sbjct: 544  LLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVK 603

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            LR A+INGP+IHPGAT+Y D +S+ +L  NKKMRI++SRKLPSSR VV+Q G+  ++EFE
Sbjct: 604  LRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFE 663

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANC------------ 1559
            GKIV RHLQDGDIVLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANC            
Sbjct: 664  GKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCRVESEHISMLDL 723

Query: 1558 ------SSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIV 1397
                  S+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QYIVP++GD +RGLIQDHIV
Sbjct: 724  DDCSDSSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIV 783

Query: 1396 AAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWK 1217
            +AVL+T K+TFLTR +++QLLY SG+ ++G GS  G    KVSV+DSE  ++ +LPA+WK
Sbjct: 784  SAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWK 842

Query: 1216 PEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFAS-----ASYKNGEEDQDH--- 1061
            PEPLW+GKQVITA+LNHITRG  P T +  GK+P+ YF S      S K  +   D    
Sbjct: 843  PEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKE 902

Query: 1060 ------NAEHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTI 899
                  + E+ LLI KNELVRGVIDKAQF KYGLVH VQELYGSN+AGILLS LSRLFT+
Sbjct: 903  KRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTV 962

Query: 898  FLQFHGFTCGVDDLIILPNFDLQRKEKLE-GEDVGEEVHCDFVKFKPGQIGPEELQLEIE 722
            FLQ HGFTCGVDDL+I PN+D+ RK +L+  E++GE VHC F+    G+I P +LQ+E+E
Sbjct: 963  FLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVE 1022

Query: 721  KAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAK 542
            K I S+ E+A   LD  MKN+L N LT   S++ K LL KGL+KPFPKNC+S+MTTTGAK
Sbjct: 1023 KIILSNGEAAITRLDRMMKNEL-NELT---SKVNKDLLLKGLVKPFPKNCLSLMTTTGAK 1078

Query: 541  GSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQE 362
            GSTVNF QIS++LGQQ+LEGKRVPRMVSGKTLP FPPWD  ARAGGFI+DRFL+GL PQE
Sbjct: 1079 GSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQE 1138

Query: 361  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDG 182
            YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDYTVRDSDGSIVQF YG+DG
Sbjct: 1139 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDG 1198

Query: 181  VDVHKTSFLKNFKALEDNRETIWQKFQNHREFNSYISELPEGLEEEARRFI 29
            VDVH+TSF+  F+AL  N+E + +KF    +FN YI +LP+ L ++ ++FI
Sbjct: 1199 VDVHQTSFITEFEALAVNQEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFI 1249


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1055 bits (2729), Expect = 0.0
 Identities = 539/815 (66%), Positives = 646/815 (79%), Gaps = 15/815 (1%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LW+NEA +CS+I D+Q+Q  +      G +MFFLETILVPPI+FRP  KGGDSVMEH  T
Sbjct: 307  LWKNEARICSFISDLQQQ--EFGKRKAGPAMFFLETILVPPIKFRPPTKGGDSVMEHPQT 364

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LL KVLQ+NI+LG+AH N  EHS+I+ RW+DLQQSIN L+DSKTA    Q+ G  GICQ
Sbjct: 365  VLLSKVLQSNISLGDAHINK-EHSKIVRRWLDLQQSINTLFDSKTAKGPGQREGAPGICQ 423

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+GLFRQ MMGKRVN+ACRSVISPDPY+ VNEIGIPP FA+KLTYPERVTPWN  K
Sbjct: 424  LLEKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTYPERVTPWNIAK 483

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            LR+AVING + HPGAT+Y D +S  +LP  +K RI++SRKLPSSR  V+Q+GK  E EFE
Sbjct: 484  LRNAVINGSECHPGATHYVDKLSINKLPPARKARISISRKLPSSRGAVTQAGKGSECEFE 543

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCS-SYNADFDGDE 1526
            GKIV RHLQDGD+VLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANCS +YNADFDGDE
Sbjct: 544  GKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSITYNADFDGDE 603

Query: 1525 INVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEF 1346
            +NVHFPQDE+SRAEAYNIVNAN Q++ P+ G+ +RGLIQDHIV+AVL+T K+TFL++ EF
Sbjct: 604  MNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLLTKKDTFLSQDEF 663

Query: 1345 SQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNH 1166
            +QLLY SGV   GP S  G    KV    SE  ++++ PA+WKP+PLWTGKQVITA+LNH
Sbjct: 664  NQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILNH 723

Query: 1165 ITRGCAPCTVKNQGKVPKNYFASASYKN---GEEDQDHNA-------EHDLLIWKNELVR 1016
            IT    P TV+   K+P N+F S + ++    EE  D +A       E  +L++KNELVR
Sbjct: 724  ITSDHPPFTVEKDAKIPSNFFKSRANEDKPCQEEKSDKDAPAEKEPDEEKMLVYKNELVR 783

Query: 1015 GVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFD 836
            GVIDK QFG+YGLVHTV EL GS++AGILLS LSRLFT +LQ HGFTCGVDDL+IL N D
Sbjct: 784  GVIDKGQFGEYGLVHTVHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKD 843

Query: 835  LQRKEKLEG-EDVGEEVHCDFVKFKPG--QIGPEELQLEIEKAICSDRESATATLDMKMK 665
             +RK++LE  E  GE VH +F+  K    +I P  +QL IEK I SD +SA A LD +M 
Sbjct: 844  EERKKQLEWCEKSGEAVHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSALAYLDRQMS 903

Query: 664  NKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELE 485
            N+L    T   S ++ +LL+ GLLKP  KNCIS+MTT+GAKGS VNFQQIS++LGQQELE
Sbjct: 904  NELN---TKTSSGVISNLLSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELE 960

Query: 484  GKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKT 305
            GKRVPRMVSGKTLP F PWD+ AR+GG+ITDRFL+GLRPQEYYFHCMAGREGLVDTAVKT
Sbjct: 961  GKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 1020

Query: 304  SRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNR 125
            SRSGYLQRCLIKNLE LK+ YD+TVRD+DGS+VQFYYGEDGVDVH+TSF+  FK L  N+
Sbjct: 1021 SRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFKELALNQ 1080

Query: 124  ETIWQKFQNH-REFNSYISELPEGLEEEARRFIHE 23
            + I+++       FNSYISELPE L+E+A RF+ +
Sbjct: 1081 DMIYKRSGGQLGAFNSYISELPEALKEKADRFLDD 1115


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1038 bits (2684), Expect = 0.0
 Identities = 526/806 (65%), Positives = 631/806 (78%), Gaps = 9/806 (1%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENEA LCSYI DIQ Q     G   G SMFFLE I VPPI+FRP  KGGD+VMEH  T
Sbjct: 299  LWENEARLCSYINDIQDQGF---GKKAGHSMFFLENIFVPPIKFRPPTKGGDNVMEHPQT 355

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LL KVLQ NI+LG+AH N ++ S+++ RWMDLQQS+N+L+D+KTA+ +  ++   GICQ
Sbjct: 356  VLLTKVLQCNISLGDAHLNKSDPSKVLSRWMDLQQSVNMLFDNKTASGK--RDVATGICQ 413

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+L+YPERVTPWN  K
Sbjct: 414  LLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTPWNVVK 473

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            LR+A++NGP+ HPGAT+Y D VS  +LP   K+    SRKLP+SR V+   GKI +HEFE
Sbjct: 474  LRNAILNGPESHPGATHYADKVSIVKLPPKGKLLSLTSRKLPTSRGVILHQGKISDHEFE 533

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
            GK+V RHL+DGD+VLVNRQPTLHKPSIMAHIVRVL GE+T+RMHYANCS+YNADFDGDEI
Sbjct: 534  GKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKTVRMHYANCSTYNADFDGDEI 593

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISRAEAYNIVNAN QY+ PT GD +R LIQDHIV+A L+T K+TFL+  EF+
Sbjct: 594  NVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSYEEFN 653

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLY SGV  AG GS  G    KV + +SE  +    PA+WKPEPLWTGKQVI+ALL +I
Sbjct: 654  QLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWTGKQVISALLYYI 713

Query: 1162 TRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNAEHD------LLIWKNELVRGVIDK 1001
            TRG  P T +   K+P N+F +   K     +D + + D      LLI+KN+LVRGV+DK
Sbjct: 714  TRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTEDTSKKKDKPDEDKLLIYKNDLVRGVVDK 773

Query: 1000 AQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKE 821
            AQFG YG++HTVQELYGSN AG LLSALSRLFT FLQ HGFTCGVDDL++    D++R  
Sbjct: 774  AQFGDYGMIHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMN 833

Query: 820  KLEG-EDVGEEVHCDFVKFK-PGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNR 647
            +L+  E +G+ VH +F+  K    I P  LQL IEK I S+ E+A  TLD KM + L +R
Sbjct: 834  QLKSCEIIGDSVHREFIGVKNSDNIDPVTLQLNIEKKIRSNGEAA-LTLDRKMTSNLNSR 892

Query: 646  LTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPR 467
             +   S ILK LL++G+LKP  KNCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPR
Sbjct: 893  TS---SGILKKLLSEGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPR 949

Query: 466  MVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 287
            MVSGKTLP FPPWD + RAGGFI DRFL+ L PQEYYFHCMAGREGLVDTAVKTSRSGYL
Sbjct: 950  MVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYFHCMAGREGLVDTAVKTSRSGYL 1009

Query: 286  QRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQK 107
            QRCL+KNLE LKVCYD+TVRD+DGSI+QF+YGEDGVDVH+TSF+  F AL  N+E ++  
Sbjct: 1010 QRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFITEFGALSTNKELVFSN 1069

Query: 106  FQNHREFNS-YISELPEGLEEEARRF 32
            +    + +S YI++LPE LE +A +F
Sbjct: 1070 YCRQLDRSSPYINKLPEALEGKAEKF 1095


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1038 bits (2684), Expect = 0.0
 Identities = 521/818 (63%), Positives = 642/818 (78%), Gaps = 17/818 (2%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LW+NEA LCS+I DI +Q     G   G SMFFLE++LVPPI+FRP AKGGDSVMEH  T
Sbjct: 285  LWKNEALLCSFISDISQQGH---GNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQT 341

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LL KVLQ+NI+LGN H N +EHS+I+  WMDLQQSIN+L+DSK+A    + +   GICQ
Sbjct: 342  VLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQ 401

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVT WN  K
Sbjct: 402  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQK 461

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRL--PANKKMRIAVSRKLPSSRSVVSQSGKIGEHE 1709
            LR+A+INGP+ HPGAT+Y D +++ +L    ++K RI++SRKLPSSR VV   G   ++E
Sbjct: 462  LRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQG-CDDYE 520

Query: 1708 FEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCS-SYNADFDG 1532
            FEGKIV RHLQDGDIVLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS +YNADFDG
Sbjct: 521  FEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSITYNADFDG 580

Query: 1531 DEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRS 1352
            DE+NVHFPQDEISRAEAYNIVNAN QY+ PT G+ +R LIQDHI++AVL+T K+TFL   
Sbjct: 581  DEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFD 640

Query: 1351 EFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALL 1172
            EFSQLLY SG+  +   +       K+  +D +  +  +LPAVWKPEPLWTGKQV+TALL
Sbjct: 641  EFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALL 700

Query: 1171 NHITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNAEHD-----------LLIWKNE 1025
            +HIT+G  P  V+   K+P+ +F      N    +  + + D           LLI+KNE
Sbjct: 701  DHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKKKEHTKVDKLKAARLDDDSLLIFKNE 760

Query: 1024 LVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILP 845
            LVRGVIDKAQFG YGLVHTVQELYGSN+AG+LLS +SRLFT+FLQ HGFTCGVDDL+++ 
Sbjct: 761  LVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIE 820

Query: 844  NFDLQRKEKLE-GEDVGEEVHCDFVKFKPGQ-IGPEELQLEIEKAICSDRESATATLDMK 671
              D +R+++L+  E +GE+VH  F+K K G+ + P  LQL IEK I  + E+A  +LD K
Sbjct: 821  CMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRK 880

Query: 670  MKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQE 491
            M ++L  R  T  S++LK LL++GLLKP  KNCIS+MTT+GAKG T NFQQIS++LGQQ+
Sbjct: 881  MTSQLNER--TGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQ 938

Query: 490  LEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAV 311
            LEGKRVPRMVSGKTLP FPPWD+ +RAGGFI DRFL+GLRPQEYYFHCMAGREGLVDTAV
Sbjct: 939  LEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAV 998

Query: 310  KTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALED 131
            KTSRSGYLQRCLIKNLESLK+CYD+TVRD+DGS++QF YGEDGVDVHKT+F+  F+AL  
Sbjct: 999  KTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAA 1058

Query: 130  NRETIWQKFQNH-REFNSYISELPEGLEEEARRFIHET 20
            N++ +++   +   ++N +I+ELP  L E+   FI+ +
Sbjct: 1059 NQDMLYENSHHQLGKYNVFINELPSALREKG-EFIYNS 1095


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1033 bits (2672), Expect = 0.0
 Identities = 522/815 (64%), Positives = 644/815 (79%), Gaps = 14/815 (1%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LW+NEA LCS+I DI +Q     G   G SMFFLE++LVPPI+FRP AKGGDSVMEH  T
Sbjct: 291  LWKNEALLCSFISDISQQGH---GNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQT 347

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LL KVLQ+NI+LGN H N +EHS+I+  WMDLQQSIN+L+DSK+A    + +   GICQ
Sbjct: 348  VLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQ 407

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVT WN  K
Sbjct: 408  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQK 467

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRL--PANKKMRIAVSRKLPSSRSVVSQSGKIGEHE 1709
            LR+A+INGP+ HPGAT+Y D +++ +L    ++K RI++SRKLPSSR VV   G   ++E
Sbjct: 468  LRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQG-CDDYE 526

Query: 1708 FEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCS-SYNADFDG 1532
            FEGKIV RHLQDGDIVLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS +YNADFDG
Sbjct: 527  FEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSITYNADFDG 586

Query: 1531 DEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRS 1352
            DE+NVHFPQDEISRAEAYNIVNAN QY+ PT G+ +R LIQDHI++AVL+T K+TFL   
Sbjct: 587  DEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFD 646

Query: 1351 EFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALL 1172
            EFSQLLY SG+  +   +       K+  +D +  +  +LPAVWKPEPLWTGKQV+TALL
Sbjct: 647  EFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALL 706

Query: 1171 NHITRGCAPCTVKNQGKVPKNYFA-----SASYKNGEEDQDHNAEHD---LLIWKNELVR 1016
            +HIT+G  P  V+   K+P+ +       S   ++ + D+   A  D   LLI+KNELVR
Sbjct: 707  DHITQGSPPFFVEKDVKIPRGFLILDEGNSKKKEHTKVDKLKAARLDDDSLLIFKNELVR 766

Query: 1015 GVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFD 836
            GVIDKAQFG YGLVHTVQELYGSN+AG+LLS +SRLFT+FLQ HGFTCGVDDL+++   D
Sbjct: 767  GVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMD 826

Query: 835  LQRKEKLE-GEDVGEEVHCDFVKFKPGQ-IGPEELQLEIEKAICSDRESATATLDMKMKN 662
             +R+++L+  E +GE+VH  F+K K G+ + P  LQL IEK I  + E+A  +LD KM +
Sbjct: 827  KEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTS 886

Query: 661  KLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEG 482
            +L  R  T  S++LK LL++GLLKP  KNCIS+MTT+GAKG T NFQQIS++LGQQ+LEG
Sbjct: 887  QLNER--TGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEG 944

Query: 481  KRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTS 302
            KRVPRMVSGKTLP FPPWD+ +RAGGFI DRFL+GLRPQEYYFHCMAGREGLVDTAVKTS
Sbjct: 945  KRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 1004

Query: 301  RSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRE 122
            RSGYLQRCLIKNLESLK+CYD+TVRD+DGS++QF YGEDGVDVHKT+F+  F+AL  N++
Sbjct: 1005 RSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQD 1064

Query: 121  TIWQKFQNH-REFNSYISELPEGLEEEARRFIHET 20
             +++   +   ++N +I+ELP  L E+   FI+ +
Sbjct: 1065 MLYENSHHQLGKYNVFINELPSALREKG-EFIYNS 1098


>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
            gi|462398594|gb|EMJ04262.1| hypothetical protein
            PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score = 1029 bits (2661), Expect = 0.0
 Identities = 516/826 (62%), Positives = 635/826 (76%), Gaps = 27/826 (3%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENE+ LCS+I DIQ Q +  +G   G+SMFFLET+LVPPI+FRP +KGGDSVMEH  T
Sbjct: 219  LWENESQLCSFISDIQCQETGTNG---GYSMFFLETVLVPPIKFRPPSKGGDSVMEHPQT 275

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LL KVL+AN++L    TN  EHSRII RW DLQ+SINV+++SKTA  Q Q++   GICQ
Sbjct: 276  VLLSKVLEANVSLSQTLTN-LEHSRIIRRWRDLQESINVMFNSKTAAGQGQRDAAPGICQ 334

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+GLFRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FA +LTYPERVTPWN  K
Sbjct: 335  LLEKKEGLFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFATRLTYPERVTPWNVDK 394

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            LR+A++NG +IHPGAT Y D      L  N++ RI++SRKLPSS+  V Q GK  +++ E
Sbjct: 395  LRNAIVNGSEIHPGATQYVDKSGPKILRQNRRERISISRKLPSSKGAVMQHGKGSDNDIE 454

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
             KIV RHL+DGDIVLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDE+
Sbjct: 455  SKIVHRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEM 514

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISR+EAYNIVNAN QY+ PT GD +R LIQDH+++AVL+T K+TFL   +F+
Sbjct: 515  NVHFPQDEISRSEAYNIVNANNQYVKPTSGDPIRALIQDHVISAVLLTKKDTFLRWDQFN 574

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLY S V A    +  G    KV + +SEG ++ +LPA+WKPEPLWTGKQVITALLNHI
Sbjct: 575  QLLYSSCVSARVSDAFSGKPDKKVFMFNSEGTMQPLLPAIWKPEPLWTGKQVITALLNHI 634

Query: 1162 TRGCAPCTVKNQGKVPKNYF------------------------ASASYKNGEEDQDHNA 1055
            TRG  P TV+   K+P+ +F                          A+ K+  ++++   
Sbjct: 635  TRGSPPVTVERDAKIPRGFFNCKNVEGEDKSGNDGQQKKRKPSKEQATDKDSSKEKEEPD 694

Query: 1054 EHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFT 875
            E+ LLI++N LVRGVIDKAQFG YGLVHTVQE YGS++AG LLS LS LFT++LQ HGFT
Sbjct: 695  ENHLLIYRNNLVRGVIDKAQFGDYGLVHTVQEFYGSDTAGKLLSVLSHLFTVYLQMHGFT 754

Query: 874  CGVDDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFKP-GQIGPEELQLEIEKAICSDR 701
            CG+DDL++L + D + K++LE  EDVGE V+ DF++ K   +  P ELQL IE  I S+ 
Sbjct: 755  CGIDDLLLLESKDAKMKDQLESCEDVGENVYRDFIEVKDVKRKDPVELQLNIENFIRSNG 814

Query: 700  ESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQ 521
            ESA A+LD +M ++L N+  T  S + K LL +GL KP  KNCI +MTT+GAKGS  N Q
Sbjct: 815  ESALASLDRRMISQLNNK--TSNSDVFKQLLLRGLSKPSVKNCIYLMTTSGAKGSVANLQ 872

Query: 520  QISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMA 341
            QI++YLGQQELEGKRVP+M+SGKTLP FPPWD+++RAGGFI DRFL+GL PQEYYFHCMA
Sbjct: 873  QITSYLGQQELEGKRVPQMISGKTLPCFPPWDWSSRAGGFIIDRFLTGLHPQEYYFHCMA 932

Query: 340  GREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTS 161
            GREGLVDTAVKTSRSGYLQRC+IKNLE LKV YD TVRD+DGSI+QF YGEDG+DVH TS
Sbjct: 933  GREGLVDTAVKTSRSGYLQRCIIKNLECLKVSYDNTVRDADGSIIQFRYGEDGIDVHMTS 992

Query: 160  FLKNFKALEDNRETIWQKFQNHRE-FNSYISELPEGLEEEARRFIH 26
            F++ F++L  N+E   +K +   +  N YI +LP  L+E+A +F+H
Sbjct: 993  FIQKFESLIANKEMFHKKGRRQMDKLNPYIKDLPLALKEKAEKFVH 1038


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
            gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
            isoform 3 [Theobroma cacao]
          Length = 1400

 Score = 1019 bits (2636), Expect = 0.0
 Identities = 526/824 (63%), Positives = 638/824 (77%), Gaps = 24/824 (2%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENE  LCS I DIQ+Q     G   G+SMFFLETILVPPI+FR   KGGDSVMEH  T
Sbjct: 23   LWENEVELCSIISDIQQQGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQT 79

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGR-WMDLQQSINVLYDSKTANSQSQKNGPDGIC 2066
            +LL KVLQANI+LGNA+TN+ + S+ + R WMDLQQS+N+L+DSKTA SQ  ++   GIC
Sbjct: 80   VLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGIC 138

Query: 2065 QNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAG 1886
            Q LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  
Sbjct: 139  QLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 198

Query: 1885 KLRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEF 1706
            KLR A+ING + HPGAT+Y D +S+ RLP ++K RI++SRKLPSSR  ++Q GK  ++EF
Sbjct: 199  KLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEF 258

Query: 1705 EGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDE 1526
            EGKIV RHLQDGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDE
Sbjct: 259  EGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 318

Query: 1525 INVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEF 1346
            INVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIV+AVL+T ++TFL+R EF
Sbjct: 319  INVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEF 378

Query: 1345 SQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNH 1166
            +QLLY SGV +    S  G    KV V  SE  +  I+PA+ KP+PLWTGKQVI+++L+H
Sbjct: 379  NQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSH 438

Query: 1165 ITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNA--------------------EHD 1046
            ITRG  P TV    K+P+++F +   KN +  ++ N                     E  
Sbjct: 439  ITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEK 498

Query: 1045 LLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGV 866
            +LI++N+LVRGVIDKAQF  YGLVHTVQELYGSN+AGILLS  SRLFT+FLQ HGFTCGV
Sbjct: 499  ILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGV 558

Query: 865  DDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFK-PGQIGPEELQLEIEKAICSDRESA 692
            DDL+I+ + D++RK++LE  E    E H +    K   +  P ELQLEIE+ I  D E+A
Sbjct: 559  DDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETA 618

Query: 691  TATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQIS 512
               LD KM + L N  +++G  +L  LL++GL+K   +NCIS+MTT+GAKGS VNFQQIS
Sbjct: 619  LTALDRKMISVL-NENSSKG--VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQIS 675

Query: 511  AYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGRE 332
            ++LGQQELEGKRVPRMVSGKTLP F PWD+ ARAGGFI+DRFLSGLRPQEYYFHCMAGRE
Sbjct: 676  SFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGRE 735

Query: 331  GLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLK 152
            GLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRD+DGSIVQF YGEDG+DVH+TSF+ 
Sbjct: 736  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIA 795

Query: 151  NFKALEDNRETIWQKFQNH-REFNSYISELPEGLEEEARRFIHE 23
             F+AL  N++ + +K  +   E +     LP+GL  +A +FI E
Sbjct: 796  KFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE 839


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1019 bits (2636), Expect = 0.0
 Identities = 526/824 (63%), Positives = 638/824 (77%), Gaps = 24/824 (2%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENE  LCS I DIQ+Q     G   G+SMFFLETILVPPI+FR   KGGDSVMEH  T
Sbjct: 315  LWENEVELCSIISDIQQQGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQT 371

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGR-WMDLQQSINVLYDSKTANSQSQKNGPDGIC 2066
            +LL KVLQANI+LGNA+TN+ + S+ + R WMDLQQS+N+L+DSKTA SQ  ++   GIC
Sbjct: 372  VLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGIC 430

Query: 2065 QNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAG 1886
            Q LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  
Sbjct: 431  QLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 490

Query: 1885 KLRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEF 1706
            KLR A+ING + HPGAT+Y D +S+ RLP ++K RI++SRKLPSSR  ++Q GK  ++EF
Sbjct: 491  KLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEF 550

Query: 1705 EGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDE 1526
            EGKIV RHLQDGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDE
Sbjct: 551  EGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 610

Query: 1525 INVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEF 1346
            INVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIV+AVL+T ++TFL+R EF
Sbjct: 611  INVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEF 670

Query: 1345 SQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNH 1166
            +QLLY SGV +    S  G    KV V  SE  +  I+PA+ KP+PLWTGKQVI+++L+H
Sbjct: 671  NQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSH 730

Query: 1165 ITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNA--------------------EHD 1046
            ITRG  P TV    K+P+++F +   KN +  ++ N                     E  
Sbjct: 731  ITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEK 790

Query: 1045 LLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGV 866
            +LI++N+LVRGVIDKAQF  YGLVHTVQELYGSN+AGILLS  SRLFT+FLQ HGFTCGV
Sbjct: 791  ILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGV 850

Query: 865  DDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFK-PGQIGPEELQLEIEKAICSDRESA 692
            DDL+I+ + D++RK++LE  E    E H +    K   +  P ELQLEIE+ I  D E+A
Sbjct: 851  DDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETA 910

Query: 691  TATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQIS 512
               LD KM + L N  +++G  +L  LL++GL+K   +NCIS+MTT+GAKGS VNFQQIS
Sbjct: 911  LTALDRKMISVL-NENSSKG--VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQIS 967

Query: 511  AYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGRE 332
            ++LGQQELEGKRVPRMVSGKTLP F PWD+ ARAGGFI+DRFLSGLRPQEYYFHCMAGRE
Sbjct: 968  SFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGRE 1027

Query: 331  GLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLK 152
            GLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRD+DGSIVQF YGEDG+DVH+TSF+ 
Sbjct: 1028 GLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIA 1087

Query: 151  NFKALEDNRETIWQKFQNH-REFNSYISELPEGLEEEARRFIHE 23
             F+AL  N++ + +K  +   E +     LP+GL  +A +FI E
Sbjct: 1088 KFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE 1131


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1018 bits (2633), Expect = 0.0
 Identities = 520/811 (64%), Positives = 619/811 (76%), Gaps = 10/811 (1%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENEA LCSYI DIQ Q     G   G SMFFLE I VPPI+FRP  KGGD VMEH  T
Sbjct: 288  LWENEARLCSYISDIQDQGF---GKKAGHSMFFLENIFVPPIKFRPPTKGGDDVMEHPQT 344

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LL KVLQ NI+LG+AH N  + S+++ RWMDLQQS+N+L+D+KT+    Q     GICQ
Sbjct: 345  VLLTKVLQGNISLGDAHINKLDPSKVLSRWMDLQQSVNLLFDNKTSG---QGEVAAGICQ 401

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+L+YPERVTPWN   
Sbjct: 402  LLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTPWNVTM 461

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            LR+A++NGP  HPGAT+Y D  ++ +LP N K+   +SRKLPSSR V+   GKI + EFE
Sbjct: 462  LRNAILNGPQSHPGATHYTDQQATVKLPPNGKLLSFISRKLPSSRGVILDHGKISDQEFE 521

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
            GKIV RHL+DGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEI
Sbjct: 522  GKIVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEI 581

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISRAEAYNIVNAN QY+ PT GD +R LIQDHIV+A L+T K+TF+T   F 
Sbjct: 582  NVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFITYEVFI 641

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLY SGV   G GS  G    KV + +SE  +    PA+WKPEPLWTGKQVI+ALL +I
Sbjct: 642  QLLYSSGVSMTGLGSFSGKHGQKVFMTNSEFEMFLFPPAIWKPEPLWTGKQVISALLYYI 701

Query: 1162 TRGCAPCTVKNQGKVPKNYFAS--ASYKNGEEDQDHNA-----EHDLLIWKNELVRGVID 1004
            TR   P TV+   K+P N+F +     K    D+  N      E  LLI+KN+LVRGV+D
Sbjct: 702  TRDSPPFTVEKNAKIPSNFFKTQVRDGKRHTRDKSRNKVEPDDEDKLLIYKNDLVRGVVD 761

Query: 1003 KAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRK 824
            KAQFG YG++HTVQELYGS  AG LLSALSRLFT FLQ HGFTCGVDDL+I    D++R 
Sbjct: 762  KAQFGDYGIIHTVQELYGSKVAGNLLSALSRLFTTFLQMHGFTCGVDDLMITEEKDVERM 821

Query: 823  EKLEG-EDVGEEVHCDFVKFKPGQ-IGPEELQLEIEKAICSDRESATATLDMKMKNKLTN 650
            ++L   E++G+ VH +F+       I P  LQL IEK I S+ E+A   LD KM + L +
Sbjct: 822  DQLRSCEEIGDIVHREFIGVMNSDIIDPITLQLNIEKKIRSNGEAALTYLDRKMTSNLNS 881

Query: 649  RLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVP 470
            R +   S ILK LL+ G+LKP  KNCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVP
Sbjct: 882  RTS---SGILKDLLSDGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVP 938

Query: 469  RMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 290
            RMVSGKTLP F PWD + RAGGFI DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGY
Sbjct: 939  RMVSGKTLPCFAPWDCSPRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGY 998

Query: 289  LQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQ 110
            LQRCL+KNLE LKVCYD+TVRD+DGSI+QF+YGEDGVDVH TSF+  F+AL  N+E ++ 
Sbjct: 999  LQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHHTSFINKFEALSTNKELVYG 1058

Query: 109  KFQNHREFNS-YISELPEGLEEEARRFIHET 20
                  + +S YI++LP+ L+E+A  F  ++
Sbjct: 1059 NCCRQLDRSSPYINKLPDALKEKAENFFRDS 1089


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
            gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
            isoform 4 [Theobroma cacao]
          Length = 1397

 Score = 1016 bits (2626), Expect = 0.0
 Identities = 525/823 (63%), Positives = 636/823 (77%), Gaps = 23/823 (2%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENE  LCS I DIQ+Q     G   G+SMFFLETILVPPI+FR   KGGDSVMEH  T
Sbjct: 23   LWENEVELCSIISDIQQQGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQT 79

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGR-WMDLQQSINVLYDSKTANSQSQKNGPDGIC 2066
            +LL KVLQANI+LGNA+TN+ + S+ + R WMDLQQS+N+L+DSKTA SQ  ++   GIC
Sbjct: 80   VLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGIC 138

Query: 2065 QNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAG 1886
            Q LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  
Sbjct: 139  QLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 198

Query: 1885 KLRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEF 1706
            KLR A+ING + HPGAT+Y D +S+ RLP ++K RI++SRKLPSSR  ++Q GK  ++EF
Sbjct: 199  KLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEF 258

Query: 1705 EGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDE 1526
            EGKIV RHLQDGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDE
Sbjct: 259  EGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 318

Query: 1525 INVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEF 1346
            INVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIV+AVL+T ++TFL+R EF
Sbjct: 319  INVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEF 378

Query: 1345 SQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNH 1166
            +QLLY SGV +    S  G    KV V  SE  +  I+PA+ KP+PLWTGKQVI+++L+H
Sbjct: 379  NQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSH 438

Query: 1165 ITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNA--------------------EHD 1046
            ITRG  P TV    K+P+++F +   KN +  ++ N                     E  
Sbjct: 439  ITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEK 498

Query: 1045 LLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGV 866
            +LI++N+LVRGVIDKAQF  YGLVHTVQELYGSN+AGILLS  SRLFT+FLQ HGFTCGV
Sbjct: 499  ILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGV 558

Query: 865  DDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESAT 689
            DDL+I+ + D++RK++LE  E    E H +    K       ELQLEIE+ I  D E+A 
Sbjct: 559  DDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVN--SETELQLEIERTIRRDGETAL 616

Query: 688  ATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISA 509
              LD KM + L N  +++G  +L  LL++GL+K   +NCIS+MTT+GAKGS VNFQQIS+
Sbjct: 617  TALDRKMISVL-NENSSKG--VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISS 673

Query: 508  YLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREG 329
            +LGQQELEGKRVPRMVSGKTLP F PWD+ ARAGGFI+DRFLSGLRPQEYYFHCMAGREG
Sbjct: 674  FLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREG 733

Query: 328  LVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKN 149
            LVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRD+DGSIVQF YGEDG+DVH+TSF+  
Sbjct: 734  LVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAK 793

Query: 148  FKALEDNRETIWQKFQNH-REFNSYISELPEGLEEEARRFIHE 23
            F+AL  N++ + +K  +   E +     LP+GL  +A +FI E
Sbjct: 794  FEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE 836


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1016 bits (2626), Expect = 0.0
 Identities = 525/823 (63%), Positives = 636/823 (77%), Gaps = 23/823 (2%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENE  LCS I DIQ+Q     G   G+SMFFLETILVPPI+FR   KGGDSVMEH  T
Sbjct: 315  LWENEVELCSIISDIQQQGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQT 371

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGR-WMDLQQSINVLYDSKTANSQSQKNGPDGIC 2066
            +LL KVLQANI+LGNA+TN+ + S+ + R WMDLQQS+N+L+DSKTA SQ  ++   GIC
Sbjct: 372  VLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGIC 430

Query: 2065 QNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAG 1886
            Q LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  
Sbjct: 431  QLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 490

Query: 1885 KLRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEF 1706
            KLR A+ING + HPGAT+Y D +S+ RLP ++K RI++SRKLPSSR  ++Q GK  ++EF
Sbjct: 491  KLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEF 550

Query: 1705 EGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDE 1526
            EGKIV RHLQDGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDE
Sbjct: 551  EGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 610

Query: 1525 INVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEF 1346
            INVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIV+AVL+T ++TFL+R EF
Sbjct: 611  INVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEF 670

Query: 1345 SQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNH 1166
            +QLLY SGV +    S  G    KV V  SE  +  I+PA+ KP+PLWTGKQVI+++L+H
Sbjct: 671  NQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSH 730

Query: 1165 ITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNA--------------------EHD 1046
            ITRG  P TV    K+P+++F +   KN +  ++ N                     E  
Sbjct: 731  ITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEK 790

Query: 1045 LLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGV 866
            +LI++N+LVRGVIDKAQF  YGLVHTVQELYGSN+AGILLS  SRLFT+FLQ HGFTCGV
Sbjct: 791  ILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGV 850

Query: 865  DDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESAT 689
            DDL+I+ + D++RK++LE  E    E H +    K       ELQLEIE+ I  D E+A 
Sbjct: 851  DDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVN--SETELQLEIERTIRRDGETAL 908

Query: 688  ATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISA 509
              LD KM + L N  +++G  +L  LL++GL+K   +NCIS+MTT+GAKGS VNFQQIS+
Sbjct: 909  TALDRKMISVL-NENSSKG--VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISS 965

Query: 508  YLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREG 329
            +LGQQELEGKRVPRMVSGKTLP F PWD+ ARAGGFI+DRFLSGLRPQEYYFHCMAGREG
Sbjct: 966  FLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREG 1025

Query: 328  LVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKN 149
            LVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRD+DGSIVQF YGEDG+DVH+TSF+  
Sbjct: 1026 LVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAK 1085

Query: 148  FKALEDNRETIWQKFQNH-REFNSYISELPEGLEEEARRFIHE 23
            F+AL  N++ + +K  +   E +     LP+GL  +A +FI E
Sbjct: 1086 FEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE 1128


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score = 1010 bits (2612), Expect = 0.0
 Identities = 505/810 (62%), Positives = 630/810 (77%), Gaps = 9/810 (1%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWEN+A LC YI DIQ       G   G SMFFLE I VPPI+FRP  KG D V EHA T
Sbjct: 292  LWENDARLCLYISDIQGLGI---GKKAGHSMFFLENIYVPPIKFRPPTKGDDKVSEHAQT 348

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LL +VL++NI+LG AH N ++ S ++ RWMDLQ+S+N+L+D+KTA+ +SQK+   GICQ
Sbjct: 349  VLLTRVLESNISLGQAHLNKSDASVVLRRWMDLQRSVNLLFDNKTASGESQKDLVTGICQ 408

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  +
Sbjct: 409  LLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVE 468

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            LR+A++NGP+ HPGAT Y D  S+ +LP +++ R   SR+L SSR V+  +GKI ++EFE
Sbjct: 469  LRNAILNGPETHPGATLYADKTSTLKLPLDRRSRSLTSRRLQSSRGVIMHNGKIHDNEFE 528

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
            GK+V RHL+DGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEI
Sbjct: 529  GKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEI 588

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISRAEAYNIVNAN QY+ PT GD +R LIQDHIV+A L+T K+TFL+  EF+
Sbjct: 589  NVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCEEFN 648

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLY SGV   G G  PG    K+ + +S+  +    PA++KPEPLWTGKQVI+ALL +I
Sbjct: 649  QLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYI 708

Query: 1162 TRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNAEHD------LLIWKNELVRGVIDK 1001
            T+G  P TV+   K+P ++F +   +  +  +D + + D      LLI+KN+LVRGV+DK
Sbjct: 709  TKGSPPFTVEKNAKIPSSFFKTRMREGKKRTKDTSIKKDEPDEDKLLIYKNDLVRGVVDK 768

Query: 1000 AQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKE 821
            AQFG YG+VHTVQE YGSN+AG LLSALSRLFT FLQ HGFTCGVDDL++    D +R  
Sbjct: 769  AQFGDYGIVHTVQEFYGSNTAGFLLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTN 828

Query: 820  KLEG-EDVGEEVHCDFVKFKPG-QIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNR 647
            +LE  E++G+ VH +F+    G  I P  +QL +EK I S+ E+A   LD KM + L +R
Sbjct: 829  QLESCEEIGDIVHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSR 888

Query: 646  LTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPR 467
             +   S +LK LL++G+LKP  KN IS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPR
Sbjct: 889  TS---SGVLKELLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPR 945

Query: 466  MVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 287
            MVSGKTLP F  WD + RAGGFI DRFL+ LRPQEYYFHCMAGREGLVDTAVKTSRSGYL
Sbjct: 946  MVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYL 1005

Query: 286  QRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQK 107
            QRCL+KNLE LKVCYD+TVRD+DGSI+QF+YGEDGVDVH+TSF+  F+AL  N+E ++  
Sbjct: 1006 QRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSN 1065

Query: 106  -FQNHREFNSYISELPEGLEEEARRFIHET 20
              +   E + YI++LP+ L+ +A +FI ++
Sbjct: 1066 CCRELDESSPYINKLPDALKGKAEKFIRDS 1095


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score = 1005 bits (2599), Expect = 0.0
 Identities = 506/807 (62%), Positives = 628/807 (77%), Gaps = 9/807 (1%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LWENEA LC YI DIQ Q     G   G SMFFL+ I VPPI+FRP  KG D V EHA T
Sbjct: 290  LWENEARLCLYISDIQGQGF---GKKAGHSMFFLDNIYVPPIKFRPPTKGDDKVSEHAQT 346

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LL +VL++NI+LG AH N ++ S ++ RWMDLQ+S+N+L+D+KTA+ Q  K+   GICQ
Sbjct: 347  VLLTRVLESNISLGQAHLNKSDASVVLRRWMDLQRSVNLLFDNKTASGQ--KDLVTGICQ 404

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             LEKK+G+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  +
Sbjct: 405  LLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVE 464

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            LR+A++NGP+ HPGAT Y D  S+ +LP +++ R   SRKL SSR V+  +GKI ++EFE
Sbjct: 465  LRNAILNGPETHPGATLYADKTSTLKLPLDRRSRSLTSRKLQSSRGVIMHNGKIHDNEFE 524

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
            GK+V RHL+DGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEI
Sbjct: 525  GKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEI 584

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISRAEAYNIVNAN QY+ PT GD +R LIQDHIV+A L+T K+TFL+  EF+
Sbjct: 585  NVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCEEFN 644

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLY SGV   G G  PG    K+ + +S+  +    PA++KPEPLWTGKQVI+ALL +I
Sbjct: 645  QLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYI 704

Query: 1162 TRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNAEHD------LLIWKNELVRGVIDK 1001
            T+G  P TV+   K+P ++F +   +  +  +D + + D      LLI++N+LVRGV+DK
Sbjct: 705  TKGSPPFTVEKNAKIPSSFFKTRMREGKKRTKDTSIKKDEPDEDKLLIYRNDLVRGVVDK 764

Query: 1000 AQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKE 821
            AQFG YG+VHTVQE YGSN+AGILLSALSRLFT FLQ HGFTCGVDDL++    D +R  
Sbjct: 765  AQFGDYGIVHTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTN 824

Query: 820  KLEG-EDVGEEVHCDFVKFKPG-QIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNR 647
            +LE  E++G+ VH +F+    G  I P  +QL +EK I S+ E+A   LD KM + L +R
Sbjct: 825  QLESCEEIGDIVHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSR 884

Query: 646  LTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPR 467
             +T    +LK LL++G+LKP  KN IS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPR
Sbjct: 885  TST---GVLKVLLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPR 941

Query: 466  MVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 287
            MVSGKTLP F  WD + RAGGFI DRFL+ LRPQEYYFHCMAGREGLVDTAVKTSRSGYL
Sbjct: 942  MVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYL 1001

Query: 286  QRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQK 107
            QRCL+KNLE LKVCYD+TVRD+DGSI+QF+YGEDGVDVH+TSF+  F+AL  N+E ++  
Sbjct: 1002 QRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSN 1061

Query: 106  FQNHREFNS-YISELPEGLEEEARRFI 29
                 + +S YI++LP+ L+ +A +FI
Sbjct: 1062 CCRELDKSSPYINKLPDALKGKAEKFI 1088


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score =  995 bits (2572), Expect = 0.0
 Identities = 509/808 (62%), Positives = 624/808 (77%), Gaps = 8/808 (0%)
 Frame = -2

Query: 2422 LWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHT 2243
            LW+NE+ LCS+I DIQ Q     G   G SMFFLE I VPPI+FRP  K GD+V EH  T
Sbjct: 282  LWKNESRLCSHISDIQDQGF---GKKAGHSMFFLENIFVPPIKFRPPLKAGDNVAEHPQT 338

Query: 2242 ILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQ 2063
            +LL KVL++NI+L +AH   ++   I+ RW DLQ S+N+L+D+KT+  +SQK+   GICQ
Sbjct: 339  VLLSKVLESNISLADAHRTKSDAYYILRRWQDLQGSVNLLFDNKTS-LRSQKDA-SGICQ 396

Query: 2062 NLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGK 1883
             L+KK+G+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN+ K
Sbjct: 397  LLDKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSAK 456

Query: 1882 LRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFE 1703
            L  A++NGPD HPGA  Y D  S+ RL  +K +R + SR+L SSR V+   GKI EHEFE
Sbjct: 457  LMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLRSSTSRRLQSSRGVIMHHGKIHEHEFE 516

Query: 1702 GKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEI 1523
            GK+V RHL+DGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEI
Sbjct: 517  GKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEI 576

Query: 1522 NVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFS 1343
            NVHFPQDEISRAEAYNIVNAN QY+ PT GD +R LIQDHIV+A L+T K+TFL+  EF+
Sbjct: 577  NVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCQEFN 636

Query: 1342 QLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHI 1163
            QLLY SGV   G GS       KV + +SE  +    PA++KPEPLWTGKQVI+ALL +I
Sbjct: 637  QLLYSSGVSMTGMGSFSCKPGQKVLMSNSESEMFLFPPAIFKPEPLWTGKQVISALLCYI 696

Query: 1162 TRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNAEHD-----LLIWKNELVRGVIDKA 998
            T+G  P TV+   K+P ++F + + +  +  +D + + D     LLI++N+LVRGV+DKA
Sbjct: 697  TKGRPPFTVEKNAKIPSSFFKTQTGEIKKHTKDTSRKKDELEDKLLIYRNDLVRGVVDKA 756

Query: 997  QFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEK 818
            QFG YG+VHTVQE YGSN+AGILLSALSRLFT FLQ HGFTCGVDDL+I    D +R  +
Sbjct: 757  QFGDYGMVHTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLIKVGKDSERLNQ 816

Query: 817  LEG-EDVGEEVHCDFVKFKPGQ-IGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRL 644
            LE  E++G+ VH +F+     + I P  +QL +EK I S+ E+A   LD KM + L +R 
Sbjct: 817  LESCEEIGDIVHREFIGVMESENIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRT 876

Query: 643  TTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRM 464
            +   S +LK LL+KG LKP  KN IS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRM
Sbjct: 877  S---SGVLKELLSKGSLKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRM 933

Query: 463  VSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 284
            VSGKTLP FP WD + RAGGFI DRFL+ LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ
Sbjct: 934  VSGKTLPCFPSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 993

Query: 283  RCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKF 104
            RCL+KNLESLKVCYD+TVRDSDGSI+QF+YGEDGVDVH+TSF+  F+AL  N+E I+   
Sbjct: 994  RCLMKNLESLKVCYDHTVRDSDGSIIQFHYGEDGVDVHQTSFINKFEALSINKELIYSNC 1053

Query: 103  QNHREFNS-YISELPEGLEEEARRFIHE 23
                + +S YI++LP+ L+ +A  FI +
Sbjct: 1054 CRQLDRSSPYINKLPDALKGKAENFIRD 1081