BLASTX nr result
ID: Mentha25_contig00001237
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha25_contig00001237
(1811 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_052850.1| N [Maize mosaic virus] gi|81940135|sp|Q6E0X1.1|... 134 1e-28
ref|YP_002308454.1| nucleocapsid protein [Maize Iranian mosaic v... 125 6e-26
ref|YP_224078.1| N [Taro vein chlorosis virus] gi|81929516|sp|Q5... 124 2e-25
ref|NP_620496.1| nucleocapsid protein [Rice yellow stunt virus] ... 118 1e-23
ref|YP_004927965.1| nucleocapsid protein [Potato yellow dwarf vi... 116 3e-23
dbj|BAI79326.1| nucleocapsid protein [Rice yellow stunt virus] 116 4e-23
gb|AHM10390.1| nucleocapsid protein, partial [Taro vein chlorosi... 114 1e-22
gb|AHN10094.1| nucleocapsid protein [Eggplant mottled dwarf virus] 111 9e-22
ref|YP_001294924.1| nucleocapsid protein [Orchid fleck virus] gi... 110 2e-21
gb|AGQ21972.1| nucleocapsid protein [Citrus necrotic spot virus] 107 1e-20
gb|AGN91968.1| nucleocapsid protein [Citrus leprosis virus nucle... 107 2e-20
emb|CCK73133.1| nucleocapsid protein [Eggplant mottled dwarf virus] 106 4e-20
dbj|BAH97109.1| nucleocapsid protein [Orchid fleck virus] 104 1e-19
ref|YP_052843.1| N [Maize fine streak virus] gi|49487509|gb|AAT6... 93 5e-16
sp|P10550.1|NCAP_SYNV RecName: Full=Nucleoprotein; Short=NP; Alt... 87 3e-14
ref|NP_042281.2| nucleocapsid protein [Sonchus yellow net virus] 86 7e-14
gb|AHH44825.1| nucleocapsid [Coffee ringspot virus] 85 1e-13
ref|NP_057954.1| nucleocapsid protein [Northern cereal mosaic vi... 73 5e-10
gb|ADE61669.1| nucleocapsid protein [Northern cereal mosaic virus] 70 4e-09
ref|YP_002308371.1| N protein [Lettuce yellow mottle virus] gi|1... 68 2e-08
>ref|YP_052850.1| N [Maize mosaic virus] gi|81940135|sp|Q6E0X1.1|NCAP_MMVR RecName:
Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
protein; Short=Protein N gi|49487512|gb|AAT66752.1| N
[Maize mosaic virus]
Length = 447
Score = 134 bits (337), Expect = 1e-28
Identities = 101/400 (25%), Positives = 174/400 (43%), Gaps = 8/400 (2%)
Frame = +3
Query: 291 SILTTWETVKKSLEEGKISPVDILSIIELAMNIKSVEENGRLLQWAQRDNDMMSGSADLS 470
++ + W + +L G S + ++ ELA N+K+ G + + D G D +
Sbjct: 61 TVASDWTNLATALTNGTFSATHLRTLCELAFNLKAPTGTGTI--FIHEIADPWKGCIDAN 118
Query: 471 KSRLMTGKIAKDIGKNMLVDEDFTMAFDEEENEEDTLDPDSREIKIKAAGYLCLCLLRLM 650
A D D D M+ + + E+K+KA +LC LLRL
Sbjct: 119 ---------APDTVAIPATDSDVNMS--TVSSGSTASGTEDAEVKMKAISFLCCTLLRLS 167
Query: 651 KKDPDNFMRGMSSIKRGFSLFYDTSSSEVMTFNLSKASVIAISDGLRSNNKLNQTVVYCV 830
K+P + M+ ++SI++ F Y SS + + +++ + I G+ + TV Y
Sbjct: 168 VKEPSHIMQAINSIRQRFGSLYGVSSPTLNSVTFNRSQLSRIKQGIETYPSARGTVFYYT 227
Query: 831 ATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTNDT 1010
T++ Y + RF QH+EL G+H YK+ L ++ +P + L+W+ N
Sbjct: 228 RYADATHGYTTKEYGICRFLLFQHLELEGMHIYKMLLALLGEWS-TVPIGLLLTWIRNPR 286
Query: 1011 TIKAVKQIYNIIVNYDNENKTNEYLWLYARYLNNGYFFDLHTARCRWLVYVLGALSKSQV 1190
+ A+ +I I+ D W YAR +NN +F DL + R +L VL +L+K V
Sbjct: 287 SKLAINEIVKIVKELDKPEVDKG--WKYARMVNNTFFLDLSSRRNTYLCAVLASLNKKNV 344
Query: 1191 PIINKSQGSPLDLLELKKMSKAEKITAQEYADIFEEQYTRLTVSSSKMNRIQREFQKRRG 1370
P + P ++ +K M ++ K + E Y + VS+ + + RG
Sbjct: 345 PQGSGEYADPTNIAVIKNMDQSVKSQVATDVTLIERIYEKYLVSAGG-DEAGTAYALSRG 403
Query: 1371 IPTARTENKKRTYQ------EMETDDVS--GGAGPSHKKT 1466
+ + +++ ME D S G AGP+ KKT
Sbjct: 404 VKRSSPPSQEGGQSGQSGGTPMEVDGASGRGAAGPAPKKT 443
>ref|YP_002308454.1| nucleocapsid protein [Maize Iranian mosaic virus]
gi|77022083|gb|ABA60884.1| nucleocapsid protein [Maize
Iranian mosaic virus]
Length = 493
Score = 125 bits (314), Expect = 6e-26
Identities = 110/430 (25%), Positives = 187/430 (43%), Gaps = 2/430 (0%)
Frame = +3
Query: 150 DDVLEEFSQLKVRPFMQSTVVAAEYDNDFFDTAKGNKTFKVNILEDDSILTTWETVKKSL 329
DDV + P +S + E+ + + K K ++V ++D +++T W V+ +L
Sbjct: 16 DDVKSLTQKASEIPSSKSIIPQTEFSDA--ELKKTLKFWEVTAMDDATMVTQWSGVQSAL 73
Query: 330 EEGKISPVDILSIIELAMNIKSVEENGRLLQWAQRDNDMMSGSADLSKSRLMTGKIAKDI 509
G S ++ + +LA N++ E G + + D K+ L D
Sbjct: 74 AGGTFSAQNLKELCQLAFNLRKPHEPGHVF---------IHNIPDSWKAYLEAA--TPDG 122
Query: 510 GKNMLVDEDFTMAFDEEENEEDTLDPDSREIKIKAAGYLCLCLLRLMKKDPDNFMRGMSS 689
+ + TM+ + D ++ K A +L L+RL K+P + M M++
Sbjct: 123 TAIPATENESTMSTIGAAAATGSAD-ETAPNKAAAIAFLSCTLMRLAIKEPKHIMDAMTN 181
Query: 690 IKRGFSLFYDTSSSEV--MTFNLSKASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRTS 863
I+ + Y SS + +TFNLS+ S I GL + T+ Y + T+
Sbjct: 182 IRSRYGSLYGRSSPFLNSVTFNLSQLS--RIKQGLETYAVARGTLFYYTRHADSTYTYTT 239
Query: 864 QSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTNDTTIKAVKQIYNI 1043
SY + R+ QH+EL G+H YK+ L + +P + L+W+ N + AV +I I
Sbjct: 240 PSYGICRYLLFQHLELEGMHIYKMLLALQTEW-ATVPMRLLLTWIRNPRSKLAVLEIVKI 298
Query: 1044 IVNYDNENKTNEYLWLYARYLNNGYFFDLHTARCRWLVYVLGALSKSQVPIINKSQGSPL 1223
+ N+D N W YAR +NN +F +L + R +L VL AL+K VP +P
Sbjct: 299 LTNWDKANVDKG--WKYARLVNNTFFLNLSSRRNTYLCAVLAALNKKFVPQGTGDYANPN 356
Query: 1224 DLLELKKMSKAEKITAQEYADIFEEQYTRLTVSSSKMNRIQREFQKRRGIPTARTENKKR 1403
++ +K M A K I E Y + ++SS + F RG+ N +
Sbjct: 357 NIAVIKNMDSAVKKQVSPDVQIVERIYD-IFLASSGSDDAGTAFTLSRGVKRTSPNNPET 415
Query: 1404 TYQEMETDDV 1433
Q T ++
Sbjct: 416 RMQWTPTQEL 425
>ref|YP_224078.1| N [Taro vein chlorosis virus] gi|81929516|sp|Q5GA90.1|NCAP_TAVCV
RecName: Full=Nucleoprotein; Short=NP; AltName:
Full=Nucleocapsid protein; Short=Protein N
gi|56480908|gb|AAV92082.1| N [Taro vein chlorosis virus]
Length = 502
Score = 124 bits (310), Expect = 2e-25
Identities = 94/403 (23%), Positives = 173/403 (42%), Gaps = 16/403 (3%)
Frame = +3
Query: 258 KTFKVNILEDDSILTTWETVKKSLEEGKISPVDILSIIELAMNIKSVEENGRLLQWAQRD 437
K ++V +D +I + W V ++ G S ++ ++ ELA N++ E G +
Sbjct: 50 KFWEVTAKDDPTIASDWAGVCTAITAGTFSATNLKTVCELAFNLRKPHETGNVFIHTVPS 109
Query: 438 NDMMSGSADLSKSRLMTGKIAKDIGKNMLVDEDFTMAFDEEENEEDTLDPDSREIKIKAA 617
+ S S D + D + D T++ + + + K KA
Sbjct: 110 DWTSSISTD-----------SVDTTPIPATESDATLSTVSAAVQSGAAEDAAT--KAKAI 156
Query: 618 GYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMTFNLSKASVIAISDGLRSN 797
+LC L+RL K+P + M ++SI++ F Y +S+ + ++ + I G+ +
Sbjct: 157 SFLCCALIRLSVKEPSHIMTAITSIRQRFGSLYGLASATLNAITFTRQQLSRIKQGIETY 216
Query: 798 NKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPT 977
+ T+ Y V + +SY + RF QH+EL G+H YK+ L ++ +P
Sbjct: 217 SLARGTIFYYVRYADTTYGSSDKSYGVCRFLLFQHLELEGMHIYKMILALLTEWS-TVPI 275
Query: 978 AVFLSWLTNDTTIKAVKQIYNIIVNYDNENKTNEYLWLYARYLNNGYFFDLHTARCRWLV 1157
+ L+W+ N + AV +I NII N+D W Y+R ++N +F ++ + R ++
Sbjct: 276 GLLLTWIRNPKSALAVVEIKNIITNFDKAGVDKS--WKYSRMIDNTFFLNISSRRNVYMC 333
Query: 1158 YVLGALSKSQVPIINKSQGSPLDLLELKKMSKAEKITAQEYADIFEEQYTRLTVSSSKMN 1337
+L +L+K VP P ++ +K M A K + E Y + +S+ +
Sbjct: 334 ALLASLNKRHVPQGVGDYADPRNIAVIKAMDAAVKNQVAIDVTLVERIYEKYLISAGSTD 393
Query: 1338 ----------------RIQREFQKRRGIPTARTENKKRTYQEM 1418
+ Q+ G PT KKRT++ M
Sbjct: 394 AGTAYTLSRGTKRPNPAVFMSHQQAEGHPT-----KKRTWKSM 431
>ref|NP_620496.1| nucleocapsid protein [Rice yellow stunt virus]
gi|75569073|sp|Q86523.1|NCAP_RYSV RecName:
Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
protein; Short=Protein N gi|414194|emb|CAA53224.1|
nucleocapsid protein [Rice yellow stunt virus]
gi|2961423|dbj|BAA25154.1| nucleocapsid protein [Rice
yellow stunt virus]
Length = 521
Score = 118 bits (295), Expect = 1e-23
Identities = 97/424 (22%), Positives = 171/424 (40%), Gaps = 2/424 (0%)
Frame = +3
Query: 222 YDNDFFDT--AKGNKTFKVNILEDDSILTTWETVKKSLEEGKISPVDILSIIELAMNIKS 395
Y+ D + T A+G K F++ L D I+ W T+K ++ S + SI+++A N++
Sbjct: 39 YNRDQYLTWLAEG-KLFQIGALTDAEIVAAWTTIKTAMGNNTFSETHMRSIVKIACNLRG 97
Query: 396 VEENGRLLQWAQRDNDMMSGSADLSKSRLMTGKIAKDIGKNMLVDEDFTMAFDEEENEED 575
+ L + + S + +G + ++ ++ ++ E E
Sbjct: 98 ITPGSTPLLVTYNPPQSATWAPAPSTDAIYSGTPVAGV----IIPQNTGAGGEDTETEAS 153
Query: 576 TLDPDSREIKIKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMTFNLS 755
K +A ++C LLR + K ++ + ++K +S Y S+ + +N S
Sbjct: 154 ---------KARAIAFICCYLLRFIVKTEEHLTNSLGNLKLQYSRLYSAQSATLSNWNPS 204
Query: 756 KASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKL 935
+ G + L TV Y +A+ L + +Y L R QH+EL GL YK+
Sbjct: 205 NTWASRVKLGFDTYLTLRATVAYNIASADALLVPENVNYGLCRMLVFQHLELSGLQLYKM 264
Query: 936 FYELDKVFNDRLPTAVFLSWLTNDTTIKAVKQIYNIIVNYDNENKTNEYLWLYARYLNNG 1115
L F P FLSW+ + + ++ QIY I VNYDN N W YA+
Sbjct: 265 AMTLIAHFKLIEPNK-FLSWIYDPLSEASIDQIYKIAVNYDNVNSKTHKHWKYAKLARGQ 323
Query: 1116 YFFDLHTARCRWLVYVLGALSKSQVPIINKSQGSPLDLLELKKMSKAEKITAQEYADIFE 1295
Y+ + R ++L Y+L L SP + L M A+ + E
Sbjct: 324 YWLNTTVKRNQFLAYILADLELKYGLAGKSDYSSPKRMKALSGMPVERMTEAETISKAVE 383
Query: 1296 EQYTRLTVSSSKMNRIQREFQKRRGIPTARTENKKRTYQEMETDDVSGGAGPSHKKTNQE 1475
+ YT + + K+ G P A ++++ + + K+ N +
Sbjct: 384 QMYTAIESAKRVDAGAAYRLAKKLGPPRANAHSRRK--------EPNNSRQHRDKQPNSK 435
Query: 1476 QDGR 1487
Q GR
Sbjct: 436 QQGR 439
>ref|YP_004927965.1| nucleocapsid protein [Potato yellow dwarf virus]
gi|158342658|gb|ABW35154.1| nucleocapsid protein [Potato
yellow dwarf virus] gi|293570308|gb|ADE45268.1|
nucleocapsid protein [Potato yellow dwarf virus]
Length = 472
Score = 116 bits (291), Expect = 3e-23
Identities = 89/362 (24%), Positives = 161/362 (44%), Gaps = 2/362 (0%)
Frame = +3
Query: 189 PFMQSTVVAAEY-DNDFFDTAKGNKTFKVNILEDDSILTTWETVKKSLEEGKISPVDILS 365
P +V EY D DF+ +K + ++ L ++ W +++S++ IS I
Sbjct: 29 PAADGKLVQIEYSDADFW--SKLTTIYSLDDLGPSDLVAAWTRIRESIDNSTISESIIGE 86
Query: 366 IIELAMNIKSVEENGRLLQWAQRDNDMMSGSADLSKSRLMTGKIAKDIGKNMLVDEDFTM 545
I +A +IK VE+ + + + ++K+ L T I G+++ V D T+
Sbjct: 87 IFRVAAHIKKVEDKTSRIIGSFAPP---TARGVVTKTGLDTAPIV--FGQSVTVGADITV 141
Query: 546 AFDEEENEEDTLDPDSREIKIKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTS 725
+N T+ + +A YLC+ LLRLM K ++F R +++I+ + FY
Sbjct: 142 -----QNTAPTVRTTDAGDAVVSAPYLCMALLRLMTKPVESFNRSLTTIRTSYGRFYGMQ 196
Query: 726 SSEVMTFNLSKASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHV 905
S+EV F+ S+ +S GL + N T+ + + + R ++++ MRF QH
Sbjct: 197 SAEVTNFSAPLNSLQQLSTGLDTYPTCNSTMAWMMGFAEGSILRNNKNHGFMRFLIFQHA 256
Query: 906 ELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTNDTTIKAVKQIYNIIVNYDNENKTN-EY 1082
E+RG+ YK+ P A FL + +KA+K + I D + + Y
Sbjct: 257 EMRGMQIYKMILTALAGLPAITP-AQFLRAIEIPDAVKAIKTVMKIATTLDKPGRQDPTY 315
Query: 1083 LWLYARYLNNGYFFDLHTARCRWLVYVLGALSKSQVPIINKSQGSPLDLLELKKMSKAEK 1262
W Y +Y+ YF DL R Y++ + I +P ++ L+ + +
Sbjct: 316 WWKYGKYIEPSYFVDLSVGRNTKFAYLMACILNEMSLINGPEYANPKNIKALESIKNNIE 375
Query: 1263 IT 1268
+T
Sbjct: 376 LT 377
>dbj|BAI79326.1| nucleocapsid protein [Rice yellow stunt virus]
Length = 513
Score = 116 bits (290), Expect = 4e-23
Identities = 93/402 (23%), Positives = 163/402 (40%), Gaps = 2/402 (0%)
Frame = +3
Query: 222 YDNDFFDT--AKGNKTFKVNILEDDSILTTWETVKKSLEEGKISPVDILSIIELAMNIKS 395
Y+ D + T A+G K F++ L D I+ W T+K ++ S + SI+++A N++
Sbjct: 39 YNRDQYLTWLAEG-KLFQIGALTDAEIVAAWTTIKTAMGNNTFSETHMRSIVKIACNLRG 97
Query: 396 VEENGRLLQWAQRDNDMMSGSADLSKSRLMTGKIAKDIGKNMLVDEDFTMAFDEEENEED 575
+ L + + S + +G + ++ ++ ++ E E
Sbjct: 98 ITPGSTPLLVTYNPPQSATWAPAPSTDAIYSGTPVAGV----IIPQNTGAGGEDTETEAS 153
Query: 576 TLDPDSREIKIKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMTFNLS 755
K +A ++C LLR + K ++ + ++K +S Y S+ + +N S
Sbjct: 154 ---------KARAIAFICCYLLRFIVKTEEHLTNSLGNLKLQYSRLYSAQSATLSNWNPS 204
Query: 756 KASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKL 935
+ G + L TV Y +A+ L + +Y L R QH+EL GL YK+
Sbjct: 205 NTWASRVKLGFDTYLTLRATVAYNIASADALLVPENVNYGLCRMLVFQHLELSGLQLYKM 264
Query: 936 FYELDKVFNDRLPTAVFLSWLTNDTTIKAVKQIYNIIVNYDNENKTNEYLWLYARYLNNG 1115
L F P FLSW+ + + ++ QIY I VNYDN N W YA+
Sbjct: 265 AMTLIAHFKLIEPNK-FLSWIYDPLSEASIDQIYKIAVNYDNVNSKTHKHWKYAKLARGQ 323
Query: 1116 YFFDLHTARCRWLVYVLGALSKSQVPIINKSQGSPLDLLELKKMSKAEKITAQEYADIFE 1295
Y+ + R ++L Y+L L SP + L M A+ + E
Sbjct: 324 YWLNTTVKRNQFLAYILADLELKYGLAGKSDYSSPKRMKALSGMPVERMTEAETISKAVE 383
Query: 1296 EQYTRLTVSSSKMNRIQREFQKRRGIPTARTENKKRTYQEME 1421
+ YT + + K+ G P A + + Q+ +
Sbjct: 384 QMYTAIESAKRVDAGAAYRLAKKLGPPRANATQQAQGAQQQQ 425
>gb|AHM10390.1| nucleocapsid protein, partial [Taro vein chlorosis virus]
Length = 349
Score = 114 bits (286), Expect = 1e-22
Identities = 83/337 (24%), Positives = 151/337 (44%)
Frame = +3
Query: 315 VKKSLEEGKISPVDILSIIELAMNIKSVEENGRLLQWAQRDNDMMSGSADLSKSRLMTGK 494
V ++ G S ++ +I ELA N++ E G + + + +D S S G
Sbjct: 2 VCSAITAGTFSATNLKTICELAFNLRKPHETGNVF--------IHTIPSDWSSSISTDGV 53
Query: 495 IAKDIGKNMLVDEDFTMAFDEEENEEDTLDPDSREIKIKAAGYLCLCLLRLMKKDPDNFM 674
I + D T++ + + + K KA +LC L+RL K+P + M
Sbjct: 54 DTTPIPAT---ETDVTLSTVSAAVQSGAAEDAAT--KAKAISFLCCALIRLSVKEPSHIM 108
Query: 675 RGMSSIKRGFSLFYDTSSSEVMTFNLSKASVIAISDGLRSNNKLNQTVVYCVATGMKDLS 854
++SI++ F Y SS+ + ++ + I G+ + + T+ Y V +
Sbjct: 109 TAITSIRQRFGSLYGLSSATLNAITFTRQQLSRIKQGIETYSVARGTIFYYVRYADTTYT 168
Query: 855 RTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTNDTTIKAVKQI 1034
+ +SY + RF QH+EL G+H YK+ L ++ +P + L+W+ N + AV +I
Sbjct: 169 SSDKSYGVCRFLLFQHLELEGMHIYKMILALLTEWS-TVPIGLLLTWIRNPKSALAVTEI 227
Query: 1035 YNIIVNYDNENKTNEYLWLYARYLNNGYFFDLHTARCRWLVYVLGALSKSQVPIINKSQG 1214
NII N+D W Y+R ++N +F + + R ++ +L +L+K VP
Sbjct: 228 KNIITNFDKAGVDKS--WKYSRMIDNTFFLNTSSRRNVYMCALLASLNKRHVPQGVGDYA 285
Query: 1215 SPLDLLELKKMSKAEKITAQEYADIFEEQYTRLTVSS 1325
P ++ +K M A K + E Y + +S+
Sbjct: 286 DPRNIAVIKAMDAAVKNQVAIDVTLVERIYEKYLISA 322
>gb|AHN10094.1| nucleocapsid protein [Eggplant mottled dwarf virus]
Length = 476
Score = 111 bits (278), Expect = 9e-22
Identities = 92/395 (23%), Positives = 175/395 (44%), Gaps = 9/395 (2%)
Frame = +3
Query: 246 AKGNKTFKVNILEDDSILTTWETVKKSLEEGKISPVDILSIIELAMNIKSVEENG-RLLQ 422
+K + + +E+ I T++ + S+E+ ++ V+I I +A IK++E + RLL
Sbjct: 44 SKITSLYDLGPMENADIATSFIKLMDSIEKSTLTEVEIAMIFRIAFQIKNIERSSERLLT 103
Query: 423 WAQRDNDMMSGSADLSKSRLMTGKIAKDIGKNMLVDEDFTMAFDEEENEEDTLDPDSREI 602
A+ D G +++ KS L ++A + + + + P S ++
Sbjct: 104 NAKPHPD---GKSNIIKSALDDVRLAGEEQQTAAASITIPAGGISPQPKPT---PSSADV 157
Query: 603 KIKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMTFNLSKASVIAISD 782
+ Y+C+ LLRL+ K ++F R + ++K F FY S V +F+ S++ I
Sbjct: 158 AVSGP-YICMALLRLVAKTVESFQRSLPTLKSSFGRFYGVQSQAVNSFSPPTQSLMQIIQ 216
Query: 783 GLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFN 962
GL + +QT+ + + + R+ +++ MR+ QH E+RG+ YK+
Sbjct: 217 GLDTYTAASQTLSWMLGQAESTIPRSDKNHGFMRYLIYQHAEMRGMQVYKMLLTTLAGLP 276
Query: 963 DRLPTAVFLSWLTNDTTIKAVKQIYNIIVNYD-NENKTNEYLWLYARYLNNGYFFDLHTA 1139
P A FL + + +K I +I+ D + ++ W YA+Y++ YF +L +
Sbjct: 277 AITP-AKFLRAIEIPDAVTTIKTIVDIVKKLDLPPERVVDHHWKYAKYVDQSYFVNLSAS 335
Query: 1140 RCRWLVYVLGALSKSQVPIINKSQGSP--LDLLELKKMSKAEKITAQEYADIFEEQYTRL 1313
R +Y++ + + I + +P + +LE K + + + AD F Y L
Sbjct: 336 RNTKFIYLIACIMGKEGLITGPAYANPKNIKVLESIKNNPSTSAYFERMADNFHMVYEGL 395
Query: 1314 TVSSSK-----MNRIQREFQKRRGIPTARTENKKR 1403
S + M +R P A T KR
Sbjct: 396 ESLSGEGVGVVMRMSNPHRPMKRPAPEATTSTAKR 430
>ref|YP_001294924.1| nucleocapsid protein [Orchid fleck virus] gi|94384803|dbj|BAE93579.1|
nucleocapsid protein [Orchid fleck virus]
Length = 450
Score = 110 bits (276), Expect = 2e-21
Identities = 97/367 (26%), Positives = 166/367 (45%), Gaps = 10/367 (2%)
Frame = +3
Query: 315 VKKSLEEGKISPVDILSIIELAMNIKSVEENGRLLQWAQRDNDMMSGSADLSKSRLMTGK 494
V ++ E +LS ++LA + G ++Q + +M G A+ S MT
Sbjct: 58 VAEAFREATQGTETVLSKLQLAQ----IMSLGFMIQMSGDPEALMQGVAEGSFLETMTMP 113
Query: 495 IAKDIGKNMLVDEDFTMAFDEEENEEDTL-------DPDSREIKIKAAGYLCLCLLRLMK 653
K + + MA D E D L D +S K +A Y+CL L+RL
Sbjct: 114 DIKTRQDSRITAAIAAMALDPTEEGPDDLEDRSQQADAESAMSKARAMVYICLSLMRLAV 173
Query: 654 KDPDNFMRGMSSIKRGFSLFYDTSSSEVMTFNLSKASVIAISDGLRSNNKLNQTVVYCVA 833
K ++FM+G+ IK+ +S+ S + ++ S+ I+D + L T+ + A
Sbjct: 174 KPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMCRNIADMFNQCDDLKATLCHHCA 233
Query: 834 TGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTNDTT 1013
+ + + L+RF QHV+L G+ Y ++ ++ + F L L+WL ++
Sbjct: 234 IADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDMRRYFT-LLTPGQLLTWLHDNQV 292
Query: 1014 IKAVKQIYNIIVNYDNENKTNEYLWLYARYLNNGYFFDLHTARCRWLVYVLG-ALSKSQV 1190
+ + I +I YD N ++ + W Y+R L+ G+F L ++C L+ + L K
Sbjct: 293 SRPLSVIADINTRYDVSNGSDRF-WRYSRGLDPGFFIALQQSKCVTLIARMAHILVKGGA 351
Query: 1191 PIINK-SQGSPLDLLELKKMSKAEKITAQEYADIFEEQYTRLTVSSSKMNRIQRE-FQKR 1364
+N+ S LE K AE A ++A F E Y L+ SS+ + R+ + +
Sbjct: 352 VAVNEYSDPRKAKSLENKPGLAAE---ADKFATEFVEAYNGLSGSSANAGPVSRKLYNQG 408
Query: 1365 RGIPTAR 1385
RGIPT R
Sbjct: 409 RGIPTRR 415
>gb|AGQ21972.1| nucleocapsid protein [Citrus necrotic spot virus]
Length = 450
Score = 107 bits (268), Expect = 1e-20
Identities = 95/367 (25%), Positives = 166/367 (45%), Gaps = 10/367 (2%)
Frame = +3
Query: 315 VKKSLEEGKISPVDILSIIELAMNIKSVEENGRLLQWAQRDNDMMSGSADLSKSRLMTGK 494
V ++ E +LS ++LA + G ++Q + +M G A+ S MT
Sbjct: 58 VAEAFREATQGTETVLSKLQLAQ----IMSLGFMVQMSGDPEALMQGVAEGSFLETMTMP 113
Query: 495 IAKDIGKNMLVDEDFTMAFD-------EEENEEDTLDPDSREIKIKAAGYLCLCLLRLMK 653
K + + MA D + E+ D +S K +A Y+CL L+RL
Sbjct: 114 DIKTRQDSRITAAIAAMALDPTEEGPDDPEDRSQQADAESALSKARAMVYICLSLMRLAV 173
Query: 654 KDPDNFMRGMSSIKRGFSLFYDTSSSEVMTFNLSKASVIAISDGLRSNNKLNQTVVYCVA 833
K ++FM+G+ IK+ +S+ S + ++ S+ I+D + L T+ + A
Sbjct: 174 KPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMCRNIADMFNQCDDLKATLCHHCA 233
Query: 834 TGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTNDTT 1013
+ + + L+RF QHV+L G+ Y ++ ++ + F L L+WL ++
Sbjct: 234 IADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDMRRHFT-LLTPGQLLTWLHDNQV 292
Query: 1014 IKAVKQIYNIIVNYDNENKTNEYLWLYARYLNNGYFFDLHTARCRWLVYVLG-ALSKSQV 1190
+ + I +I YD N ++ + W Y+R L+ G+F L ++C L+ + L K
Sbjct: 293 SRPLSVIADINTRYDVSNGSDRF-WRYSRGLDPGFFIALQQSKCVTLIARMAHILVKGGA 351
Query: 1191 PIINK-SQGSPLDLLELKKMSKAEKITAQEYADIFEEQYTRLTVSSSKMNRIQRE-FQKR 1364
+N+ S LE K AE A ++A F E Y L+ SS+ + R+ + +
Sbjct: 352 VAVNEYSDPRKAKSLENKPGLAAE---ADKFATEFVEAYNGLSGSSANAGPVSRKLYNQG 408
Query: 1365 RGIPTAR 1385
RGIPT R
Sbjct: 409 RGIPTRR 415
>gb|AGN91968.1| nucleocapsid protein [Citrus leprosis virus nuclear type]
Length = 450
Score = 107 bits (267), Expect = 2e-20
Identities = 95/367 (25%), Positives = 167/367 (45%), Gaps = 10/367 (2%)
Frame = +3
Query: 315 VKKSLEEGKISPVDILSIIELAMNIKSVEENGRLLQWAQRDNDMMSGSADLSKSRLMTGK 494
V ++ E +L+ ++LA + G ++Q + +M G A+ S MT
Sbjct: 58 VAEAFREATQGTETVLTKLQLAQ----IMSLGFMVQMSGDPAALMQGVAEGSFLETMTMP 113
Query: 495 IAKDIGKNMLVDEDFTMAFDEEENEEDTLDPDSREI-------KIKAAGYLCLCLLRLMK 653
K + + MA D E D L+ S++ K +A Y+CL L+RL
Sbjct: 114 DIKTRQDSRITAAIAAMALDPTEEGPDDLEDRSQQAEAENALSKARAMVYICLSLMRLAV 173
Query: 654 KDPDNFMRGMSSIKRGFSLFYDTSSSEVMTFNLSKASVIAISDGLRSNNKLNQTVVYCVA 833
K ++FM+G+ IK+ +S+ S + ++ S+ I+D + L T+ + A
Sbjct: 174 KPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMCRNIADMFNQCDDLKATLCHHCA 233
Query: 834 TGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTNDTT 1013
+ + + L+RF QHV+L G+ Y ++ ++ + F L L+WL ++
Sbjct: 234 IADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDMRRHFT-LLTPGQLLTWLHDNQV 292
Query: 1014 IKAVKQIYNIIVNYDNENKTNEYLWLYARYLNNGYFFDLHTARCRWLVYVLG-ALSKSQV 1190
+ + I +I YD N ++ + W Y+R L+ G+F L ++C L+ + L K
Sbjct: 293 SRPLSVIADINTRYDVSNGSDRF-WRYSRGLDPGFFIALQQSKCVTLIARMAHILVKGGA 351
Query: 1191 PIINK-SQGSPLDLLELKKMSKAEKITAQEYADIFEEQYTRLTVSSSKMNRIQRE-FQKR 1364
+N+ S LE K AE A ++A F E Y L+ SS+ + R+ + +
Sbjct: 352 VAVNEYSDPRKAKSLENKPGLAAE---ADKFATEFVEAYNGLSGSSANAGPVSRKLYNQG 408
Query: 1365 RGIPTAR 1385
RGIPT R
Sbjct: 409 RGIPTRR 415
>emb|CCK73133.1| nucleocapsid protein [Eggplant mottled dwarf virus]
Length = 476
Score = 106 bits (264), Expect = 4e-20
Identities = 95/426 (22%), Positives = 182/426 (42%), Gaps = 13/426 (3%)
Frame = +3
Query: 246 AKGNKTFKVNILEDDSILTTWETVKKSLEEGKISPVDILSIIELAMNIKSVEENGR-LLQ 422
+K + ++ +E+ I ++ V S+E+ ++ +I I +A IK++E + LL
Sbjct: 44 SKITSLYDLSPMENADIAASFIKVMDSIEKSTLTEGEIAMIFRIAFQIKNIERSSESLLS 103
Query: 423 WAQRDNDMMSGSADLSKSRLMTGKIAKDIGKNMLVDEDFTMAFDEEENEEDTLDPDSREI 602
A+ D G +++ KS L ++A + + + + P S ++
Sbjct: 104 NAKLHPD---GKSNIIKSALDDVRLAGEEQQTAAASITIPAGGISPQPKPT---PSSADV 157
Query: 603 KIKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMTFNLSKASVIAISD 782
+ Y+C+ LLRL+ K ++F R + ++K F FY S V +F+ S++ I
Sbjct: 158 AVSGP-YICMALLRLVAKTVESFQRSLPTLKSSFGRFYGVQSQAVNSFSPPTQSLMQIIQ 216
Query: 783 GLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFN 962
GL + +QT+ + + + R+ +++ MR+ QH E+RG+ YK+
Sbjct: 217 GLDTYTAASQTLSWMLGQAESTIPRSDKNHGFMRYLIYQHAEMRGMQVYKMLLTTLAGLP 276
Query: 963 DRLPTAVFLSWLTNDTTIKAVKQIYNIIVNYD-NENKTNEYLWLYARYLNNGYFFDLHTA 1139
P A FL + + +K I +I+ D + ++ W YA+Y++ YF +L +
Sbjct: 277 AITP-AKFLRAIEIPDAVTTIKTIVDIVKKLDLPPERVVDHHWKYAKYVDQSYFVNLSAS 335
Query: 1140 RCRWLVYVLGALSKSQVPIINKSQGSP--LDLLELKKMSKAEKITAQEYADIFEEQYTRL 1313
R +Y++ + + + I + +P + +LE K + + + AD F Y L
Sbjct: 336 RNTKFIYLIACIMEKEGLITGPAYANPKNIKVLESIKNNPSTSAYFERMADNFHMVYEGL 395
Query: 1314 TVSSSK-----MNRIQREFQKRRGIPTARTENKKR----TYQEMETDDVSGGAGPSHKKT 1466
S + M +R P A KR + E + GA P+
Sbjct: 396 ESLSGEGVGVVMRMSNPHRPMKRPAPDATISTAKRPAPASQPPPEAEMQVDGAPPADTPP 455
Query: 1467 NQEQDG 1484
Q G
Sbjct: 456 QQADPG 461
>dbj|BAH97109.1| nucleocapsid protein [Orchid fleck virus]
Length = 450
Score = 104 bits (260), Expect = 1e-19
Identities = 95/367 (25%), Positives = 165/367 (44%), Gaps = 10/367 (2%)
Frame = +3
Query: 315 VKKSLEEGKISPVDILSIIELAMNIKSVEENGRLLQWAQRDNDMMSGSADLSKSRLMTGK 494
V ++ E +LS ++LA + G ++Q + +M G A+ S MT
Sbjct: 58 VAEAFREATQGTETVLSKLQLAQ----IMSLGFMIQMSGDPEALMQGVAEGSFLEAMTMP 113
Query: 495 IAKDIGKNMLVDEDFTMAFDEEENEEDTL-------DPDSREIKIKAAGYLCLCLLRLMK 653
K + + MA D E + L D +S K +A Y+CL L+RL
Sbjct: 114 DIKTRQDSRITAAIAAMALDPTEEGPNDLEDRSQQADAESAMSKARAMVYICLSLMRLAV 173
Query: 654 KDPDNFMRGMSSIKRGFSLFYDTSSSEVMTFNLSKASVIAISDGLRSNNKLNQTVVYCVA 833
K ++FM+G+ IK+ +S+ S + ++ S+ I+D + L T+ + A
Sbjct: 174 KPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMCRNIADMFNQCDDLKATLCHHCA 233
Query: 834 TGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTNDTT 1013
+ + + L+RF QHV+L G+ Y ++ ++ + F L L+WL ++
Sbjct: 234 IADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDMRRHFT-LLTPGQLLTWLHDNQV 292
Query: 1014 IKAVKQIYNIIVNYDNENKTNEYLWLYARYLNNGYFFDLHTARCRWLVYVLG-ALSKSQV 1190
+ + I +I D N ++ + W Y+R L+ G+F L ++C L+ + L K
Sbjct: 293 SRPLSVIADINTRCDVSNGSDRF-WRYSRGLDPGFFIALQQSKCVTLIARMAHILVKGGA 351
Query: 1191 PIINK-SQGSPLDLLELKKMSKAEKITAQEYADIFEEQYTRLTVSSSKMNRIQRE-FQKR 1364
+N+ S LE K AE A ++A F E Y L+ SS+ + R+ + +
Sbjct: 352 VAVNEYSDPRKAKSLENKPGLAAE---ADKFATEFVEAYNGLSGSSANAGPVSRKLYNQG 408
Query: 1365 RGIPTAR 1385
RGIPT R
Sbjct: 409 RGIPTRR 415
>ref|YP_052843.1| N [Maize fine streak virus] gi|49487509|gb|AAT66750.1| N [Maize fine
streak virus]
Length = 462
Score = 92.8 bits (229), Expect = 5e-16
Identities = 91/418 (21%), Positives = 180/418 (43%), Gaps = 22/418 (5%)
Frame = +3
Query: 294 ILTTWETVKKSLEEGKISPVDILSIIELAMNIKSVEENGRLL------------QWAQRD 437
I T +TV L + KI+ + + +A+++K+ NG+ + Q D
Sbjct: 63 IKTLGKTVLTKLSDKKITEKTLFDMCRIALSLKA--PNGQDVFKIPTVTFAGAKTGGQDD 120
Query: 438 NDMMSGSADLSKSRLMTGKIAKDIGKNMLVDEDFTMAFDEEENEEDTLDPDSREIKIKAA 617
+++ +D SK+ + + + + + + +T P
Sbjct: 121 TNLVPVPSDTSKTTEYLQTVTSKSSTSQATQKKSLSTYVDNDANYETAIP---------- 170
Query: 618 GYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMTF--NLSKASVIAISDGLR 791
Y LRL+ K P+++ R IK + FY +S+ + +LS ASV+ ++
Sbjct: 171 -YFLCSFLRLIVKQPESWRRAFGDIKEQYGKFYGKTSNLITNAEDDLSIASVVKVA--FD 227
Query: 792 SNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRL 971
+ + + Y K LS ++ + + + QH+ G+H Y + EL + +
Sbjct: 228 TFKPIVNFIAYVAGETDKGLSPNTKEHGMFTYFVGQHLSFVGMHVYPMVAELMQKCKG-I 286
Query: 972 PTAVFLSWLTNDTTIKAVKQIYNIIVNYDNENKTN----EYLWLYARYLNNGYFFDLHTA 1139
+FL++L D T ++VK+I I+ YD ++T+ ++LW YAR ++ G+F L
Sbjct: 287 KQDLFLTFLDVDETKESVKEICRIMTTYDAPSQTDRASRDFLWKYARVIDEGFFLKLQNK 346
Query: 1140 RCRWLVYVLGALSKSQVPIINKSQGSPLDLLELKKMSKAEKITAQEYADIFEEQYTRLT- 1316
+ + +Y L + + + + S P ++ L+ + A+EYA++F Y + T
Sbjct: 347 KNKEFLYGLALIHEKMGLVRSVSYAKPTNMAILQNQD-GLRADAEEYANLFVFLYKKATG 405
Query: 1317 --VSSSKMNRIQREFQKRRGIPT-ARTENKKRTYQEMETDDVSGGAGPSHKKTNQEQD 1481
+S M++++ + R T A KR+ S G G KK +++ D
Sbjct: 406 QKEGASPMDQLRSQLAGERVTATIAEASAPKRS---------SDGTGNVSKKKSRKDD 454
>sp|P10550.1|NCAP_SYNV RecName: Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
protein; Short=Protein N gi|335136|gb|AAA47895.1|
nucleocapsid protein [Sonchus yellow net virus]
gi|484031|gb|AAA50380.1| nucleocapsid protein [Sonchus
yellow net virus] gi|225723|prf||1311418A nucleocapsid
protein
Length = 475
Score = 86.7 bits (213), Expect = 3e-14
Identities = 101/438 (23%), Positives = 188/438 (42%), Gaps = 14/438 (3%)
Frame = +3
Query: 222 YDNDFFDTAKGNKTFKVNILEDDSILTTWETVKKSLEEGKISPVDILSIIELAMNIKSVE 401
Y F A +K + ++ I+T + + + ++ D+ + ++ A+++K
Sbjct: 37 YREYLFSDAVKYPIYKRATMTNEEIVTFFGKITSD-KHTHMTESDMWTFVQCALSLKDPV 95
Query: 402 ENGRLLQWAQRDNDMMSGSADLSKSR-LMTGKIAKDIGKNMLVDEDFTMAFDEEENEEDT 578
+ + D + + AD + ++ TGK+A +V +D +
Sbjct: 96 DRSSIFDKGFWDANHLC--ADYATAQPANTGKVAMSHHNPGVVVTQLVPKYDTGGSSSQ- 152
Query: 579 LDPDSREIKIKAAGYLCLCLLRLMKKDPDNFMRGM-SSIKRGFSLFYDTSSSEVMTFNLS 755
+ +S K +A + L R K N + + ++ + FY TSSS TF S
Sbjct: 153 -ETESMASKAEAISFYFAWLTRFSVKQAPNTINVLYDRVRATYLKFYSTSSSIFDTFRPS 211
Query: 756 KASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAY-K 932
+ + D + ++ T++ VA T + ++++RF F Q++E GLHAY
Sbjct: 212 NTWLQGLKDAFDTFPRVKNTLILHVAHAETYFRPTPKIFNVLRFLFFQNLEFMGLHAYVS 271
Query: 933 LFYELDKVFNDRLPTAVFLSWLTNDTTIKAVKQIYNIIVNYDN---ENKTN-EYLWLYAR 1100
+ + KV LP + LSWL + A+ + + I+ DN +N N E LW YAR
Sbjct: 272 IVTIMSKV---ALPPSQVLSWLRVSGSEMAIDEAFMIMNTLDNGMIDNGHNAERLWKYAR 328
Query: 1101 YLNNGYFFDLHTARCRWLVYVLGALSKSQVPIINKSQGSPLDLLELKKMSKAEKITAQEY 1280
L+ GYF L ++ L+ +L + + SPL++ + +KA K +
Sbjct: 329 CLDQGYFNRLQSSYSAELIAMLAYIEINMGISTEVGYNSPLNIYAIAN-NKAVKEVGRMK 387
Query: 1281 ADIF---EEQYTRLTVSSSKMNRIQREFQKR--RGIPTAR--TENKKRTYQEMETDDVSG 1439
AD+F + LT +S ++++ Q++ R AR +NK+ M+TD
Sbjct: 388 ADVFIQCKNSVVSLTQDASVIDKVYAAAQQKHIRSEEAARPSEQNKEDEVVAMDTD---- 443
Query: 1440 GAGPSHKKTNQEQDGRRP 1493
PS K+ + +P
Sbjct: 444 --APSRKRRSDALTTEKP 459
>ref|NP_042281.2| nucleocapsid protein [Sonchus yellow net virus]
Length = 475
Score = 85.5 bits (210), Expect = 7e-14
Identities = 101/438 (23%), Positives = 188/438 (42%), Gaps = 14/438 (3%)
Frame = +3
Query: 222 YDNDFFDTAKGNKTFKVNILEDDSILTTWETVKKSLEEGKISPVDILSIIELAMNIKSVE 401
Y F A +K + ++ I+T + + + ++ D+ + ++ A+++K
Sbjct: 37 YREYLFSDAVKYPIYKRATMTNEEIVTFFGKITSD-KHTHMTESDMWTFVQCALSLKDPV 95
Query: 402 ENGRLLQWAQRDNDMMSGSADLSKSR-LMTGKIAKDIGKNMLVDEDFTMAFDEEENEEDT 578
+ + D + + AD + ++ TGK+A +V + D +
Sbjct: 96 DRSSIFDKGFWDANHLC--ADYATAQPANTGKVAMSHHNPGVVITQLVPSTDTGGSSSQ- 152
Query: 579 LDPDSREIKIKAAGYLCLCLLRLMKKDPDNFMRGM-SSIKRGFSLFYDTSSSEVMTFNLS 755
+ +S K +A + L R K N + + ++ + FY TSSS TF S
Sbjct: 153 -ETESMASKAEAISFYFAWLTRFSVKQAPNTINVLYDRVRATYLKFYSTSSSIFDTFRPS 211
Query: 756 KASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAY-K 932
+ + D + ++ T++ VA T + ++++RF F Q++E GLHAY
Sbjct: 212 NTWLQGLKDAFDTFPRVKNTLILHVAHAETYFRPTPKIFNVLRFLFFQNLEFMGLHAYVS 271
Query: 933 LFYELDKVFNDRLPTAVFLSWLTNDTTIKAVKQIYNIIVNYDN---ENKTN-EYLWLYAR 1100
+ + KV LP + LSWL + A+ + + I+ DN +N N E LW YAR
Sbjct: 272 IVTIMSKV---ALPPSQVLSWLRVSGSEMAIDEAFMIMNTLDNGMIDNGHNAERLWKYAR 328
Query: 1101 YLNNGYFFDLHTARCRWLVYVLGALSKSQVPIINKSQGSPLDLLELKKMSKAEKITAQEY 1280
L+ GYF L ++ L+ +L + + SPL++ + +KA K +
Sbjct: 329 CLDQGYFNRLQSSYSAELIAMLAYIEINMGISTEVGYNSPLNIYAIAN-NKAVKEVGRMK 387
Query: 1281 ADIF---EEQYTRLTVSSSKMNRIQREFQKR--RGIPTAR--TENKKRTYQEMETDDVSG 1439
AD+F + LT +S ++++ Q++ R AR +NK+ M+TD
Sbjct: 388 ADVFIQCKNSVVSLTQDASVIDKVYAAAQQKHIRSEEAARPSEQNKEDEVVAMDTD---- 443
Query: 1440 GAGPSHKKTNQEQDGRRP 1493
PS K+ + +P
Sbjct: 444 --APSRKRRSDALTTEKP 459
>gb|AHH44825.1| nucleocapsid [Coffee ringspot virus]
Length = 446
Score = 85.1 bits (209), Expect = 1e-13
Identities = 69/305 (22%), Positives = 130/305 (42%), Gaps = 9/305 (2%)
Frame = +3
Query: 498 AKDIGKNMLVDEDFTMAFDEEENEEDTLDPDSREIKIKAAGYLCLCLLRLMKKDPDNFMR 677
A + M +D D D+ E + + + + +A Y+CL L+RL K D FM+
Sbjct: 123 AAAVNSTMNIDPD---EGDQSEGGQAPTEEEDAASQCRAISYICLSLMRLAVKRVDTFMK 179
Query: 678 GMSSIKRGFSLFYDTSSSEVMTFNLSKASVIAISDGLRSNNKLNQTVVYCVATGMKDLSR 857
G + + + S + +FN S+ IS + L +T+ + A +
Sbjct: 180 GTPQLVTAYHILMGDHSPFLSSFNYSRGLCSNISSLFNQCDDLKRTLAHHCAVADESHHN 239
Query: 858 TSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTNDTTIKAVKQIY 1037
+ +RF QH++L G+ Y ++ ++ + + P A+ L+WL + + I
Sbjct: 240 NRTVHGPLRFLILQHMDLNGMVPYGMYVDMKRGLSMLSPGAI-LTWLHDAQVASTLMLIS 298
Query: 1038 NIIVNYDNENKTNEYLWLYARYLNNGYFFDLHTARCRWLVYVLGALSKSQVPIINKSQGS 1217
I ++D +KT+ + W Y+R ++ G+F +L +RC L+ + + +G
Sbjct: 299 KINKDHDRVDKTDRF-WRYSRCIDPGFFVELQQSRCHILIARMADI---------LVRGG 348
Query: 1218 PLDLLELKKMSKAEKI--------TAQEYADIFEEQYTRLTVSSSKMNRIQREF-QKRRG 1370
+++ E KAE I A+++ F Y L+ +S + R G
Sbjct: 349 CVNVTEYSDPKKAESIKDKANILANAEKFGTEFMLAYNALSGTSEGAGPVARALASASSG 408
Query: 1371 IPTAR 1385
PT R
Sbjct: 409 QPTRR 413
>ref|NP_057954.1| nucleocapsid protein [Northern cereal mosaic virus]
gi|81975130|sp|Q9JGU1.1|NCAP_NCMV RecName:
Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
protein; Short=Protein N gi|7707668|dbj|BAA95344.1|
nucleocapsid protein [Northern cereal mosaic virus]
Length = 431
Score = 72.8 bits (177), Expect = 5e-10
Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 9/210 (4%)
Frame = +3
Query: 573 DTLDPDSREIK-------IKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSS 731
D D D ++++ I+ ++ L++L+ K N + G + + ++ FY S
Sbjct: 147 DNTDHDLQQVRSQDDETIIRFGSFISAFLMKLIVKQQSNIVDGWNGMLERYTNFY--GES 204
Query: 732 EVMTFNLSKASVIA-ISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVE 908
+ A +A + + L S+ K+ T V ++ LS +S+ ++R+ +
Sbjct: 205 PITAVPKPNADWLAGLKNYLISDPKIGHTWVRVISAAENALSVGDKSFQMVRYLASLPLS 264
Query: 909 LRGLHAYKLFYELDKVFNDRLPTAVFLSWLTNDTTIKAVKQIYNIIVNYDNENKTNEYLW 1088
L G+HAYKLF E+ K N L L + + T+ A++ I I+ N+++ T + +
Sbjct: 265 LTGMHAYKLFLEVQKQSN--LGMQWLLEEMVSPKTLPALEGIAKILKNFESRTSTRKPPY 322
Query: 1089 L-YARYLNNGYFFDLHTARCRWLVYVLGAL 1175
YAR ++ YF +L T C LVY+L L
Sbjct: 323 FRYARIMSPAYFQELQTKNCPELVYLLVCL 352
>gb|ADE61669.1| nucleocapsid protein [Northern cereal mosaic virus]
Length = 431
Score = 69.7 bits (169), Expect = 4e-09
Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 23/278 (8%)
Frame = +3
Query: 411 RLLQWAQRDNDMM------SGSADLSKSRLMTGKIAKDIGKNMLVDEDFTMAFDEEENEE 572
RLL A ND++ G ADL + +I I + + T E E ++
Sbjct: 85 RLLTPAAGSNDLVFKDYIPQGGADLPQ------EIKNKIYVTTELSDSQTAGKSEAEKKK 138
Query: 573 --------DTLDPDSREIK-------IKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFS 707
D D D ++++ I+ ++ L++L+ K N + G + + ++
Sbjct: 139 ATADLIFGDNTDHDLQQVRSQDDETIIRFGSFISAFLMKLIVKQQSNVVDGWNGMLERYT 198
Query: 708 LFYDTSSSEVMTFNLSKASVIA-ISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMR 884
FY S + A +A + + L S+ K+ T V ++ LS +S+ ++R
Sbjct: 199 NFY--GESPITAVPKPNADWLAGLKNYLISDPKIGHTWVRVISAAENALSVGDKSFQMVR 256
Query: 885 FAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTNDTTIKAVKQIYNIIVNYDNE 1064
+ + L G+HAYKLF E+ K N L L + + T+ A++ I I+ +++
Sbjct: 257 YLASLPLSLTGMHAYKLFLEVQKQSN--LGMQWLLEEMVSPKTLPALEGIAKILKYFESR 314
Query: 1065 NKTNEYLWL-YARYLNNGYFFDLHTARCRWLVYVLGAL 1175
T + + YAR ++ YF +L T C LVY+L L
Sbjct: 315 TSTRKPPYFRYARIMSPAYFQELQTKNCPELVYLLVCL 352
>ref|YP_002308371.1| N protein [Lettuce yellow mottle virus] gi|157427483|gb|ABV56124.1| N
protein [Lettuce yellow mottle virus]
Length = 452
Score = 67.8 bits (164), Expect = 2e-08
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 6/228 (2%)
Frame = +3
Query: 597 EIKIKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMTFNLSKASVIAI 776
E + A G+L +++L K ++F+ G+ ++ FS +YDTSS + TFN +++ + +
Sbjct: 200 ETEAAAYGFLAAIIIKLCAKTAESFIEGLPRVRDRFSSWYDTSSQVIKTFNPTESVLNTL 259
Query: 777 SDGLRSNNKLNQTVVYCVATGMK---DLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYEL 947
G ++ T V VA L T Q L+ + Q G+HAY L E+
Sbjct: 260 RTGFGRRPEILSTWVLWVAYNENREDPLLITQQG--LLTYLAGQQFSYPGMHAYTLLIEI 317
Query: 948 DKVFNDRLPTAVFLSWLTNDTTIKAVKQIYNIIVNYDNEN---KTNEYLWLYARYLNNGY 1118
+ + L + T VK++ +II +++ K Y + YAR + Y
Sbjct: 318 HE--QTGIKFGQLLREMDCPATRAGVKEVLDIIKDFEITKLHPKRTTY-FRYARNWDPKY 374
Query: 1119 FFDLHTARCRWLVYVLGALSKSQVPIINKSQGSPLDLLELKKMSKAEK 1262
F L + +C+ LVYV ++ K +G P ++ +K + K
Sbjct: 375 FGTLQSTQCKTLVYVAASVCKK--ISAQGEKGDPTEIYAIKTLDATIK 420