BLASTX nr result
ID: Mentha25_contig00001054
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha25_contig00001054
(483 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ... 269 3e-70
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su... 269 3e-70
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su... 269 3e-70
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta... 269 3e-70
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su... 266 2e-69
ref|XP_007042502.1| DNA-directed RNA polymerase family protein [... 265 4e-69
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera] 265 5e-69
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype... 263 2e-68
ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phas... 261 9e-68
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr... 260 1e-67
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su... 260 1e-67
gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus not... 259 3e-67
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su... 257 1e-66
ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prun... 257 1e-66
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-... 256 2e-66
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ... 252 4e-65
gb|AFK41039.1| unknown [Medicago truncatula] 251 6e-65
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [... 251 1e-64
ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Caps... 250 2e-64
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ... 249 2e-64
>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
[Solanum tuberosum]
Length = 319
Score = 269 bits (688), Expect = 3e-70
Identities = 132/153 (86%), Positives = 146/153 (95%), Gaps = 2/153 (1%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEG +YQRFPKIKIREVKDD+M+FELRETD SIANALRR+MIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDFMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFI+HRLGLVPLTSERAM+MRFSRDCDACDGDGQCEYCSVEF+LRVKC++DQTLDV
Sbjct: 61 VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFSD--ASLDNTDSRGII 483
TSK+L SSDHTVVPVD+SD +S DNT ++GII
Sbjct: 121 TSKDLLSSDHTVVPVDYSDTSSSFDNTPNKGII 153
>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cicer arietinum]
Length = 319
Score = 269 bits (687), Expect = 3e-70
Identities = 131/153 (85%), Positives = 145/153 (94%), Gaps = 2/153 (1%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEGA+Y R P++KIRE+KDDYM+FELR+TD S+ANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCI DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFS--DASLDNTDSRGII 483
TSK+LYSSDHTVVPVDFS +SL+++D RGII
Sbjct: 121 TSKDLYSSDHTVVPVDFSADPSSLESSDGRGII 153
>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Solanum lycopersicum]
Length = 319
Score = 269 bits (687), Expect = 3e-70
Identities = 131/153 (85%), Positives = 146/153 (95%), Gaps = 2/153 (1%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEG +YQRFPKIK+REVKDD+M+FELR+TD SIANALRR+MIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFI+HRLGLVPLTSERAM+MRFSRDCDACDGDGQCEYCSVEF+LRVKC++DQTLDV
Sbjct: 61 VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFSDA--SLDNTDSRGII 483
TSK+L SSDHTVVPVD+SDA S DNT ++GII
Sbjct: 121 TSKDLLSSDHTVVPVDYSDASSSFDNTPNKGII 153
>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 318
Score = 269 bits (687), Expect = 3e-70
Identities = 130/152 (85%), Positives = 145/152 (95%), Gaps = 1/152 (0%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEGA+YQRFP+IKIRE+KDDY +FELR+TD S+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1 MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQC+YCSVEFHLR KCI DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFSDAS-LDNTDSRGII 483
TSK+LYSSDHTVVPVDFSD+S D+++ RGII
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSSGYDSSEQRGII 152
>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
vinifera]
Length = 318
Score = 266 bits (680), Expect = 2e-69
Identities = 130/152 (85%), Positives = 142/152 (93%), Gaps = 1/152 (0%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEG +YQRFPKIKIREVKDDY +FELRETD S+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAMAMRFSRDCDACDGDGQCE+CSVEFHLR KC+ D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 391 TSKELYSSDHTVVPVDFSDAS-LDNTDSRGII 483
TSK+L SSDHTVVPVDFSD+S D+ D +GII
Sbjct: 121 TSKDLISSDHTVVPVDFSDSSGYDSADKKGII 152
>ref|XP_007042502.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
gi|508706437|gb|EOX98333.1| DNA-directed RNA polymerase
family protein [Theobroma cacao]
Length = 318
Score = 265 bits (678), Expect = 4e-69
Identities = 128/152 (84%), Positives = 143/152 (94%), Gaps = 1/152 (0%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEG +YQRFPK+KIRE+KDDY +FELR+TD S+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC+ DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFSD-ASLDNTDSRGII 483
TSK+LYSSDHTVVPVDF+D A D+++ RGII
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGYDSSEQRGII 152
>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
Length = 318
Score = 265 bits (677), Expect = 5e-69
Identities = 129/152 (84%), Positives = 142/152 (93%), Gaps = 1/152 (0%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEG +YQRFPKIKIREVKDDY +FELRETD S+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC+ D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 391 TSKELYSSDHTVVPVDFSDAS-LDNTDSRGII 483
TSK+L SSDHTVVPVDFSD+S D+ D +GII
Sbjct: 121 TSKDLISSDHTVVPVDFSDSSGYDSADKKGII 152
>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
[Populus trichocarpa] gi|550331423|gb|EEE87820.2|
DNA-directed RNA polymerase II 36 kDa polypeptide B
family protein [Populus trichocarpa]
Length = 323
Score = 263 bits (671), Expect = 2e-68
Identities = 131/157 (83%), Positives = 142/157 (90%), Gaps = 6/157 (3%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
ME +YQRFPKIKIRE+KDDY++FELRETD S+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAM MRFSRDCDACDGDGQCEYCSVEFHLR KCI DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFSDAS-----LDNTDS-RGII 483
TSK+LYSSDH V+PVDFSD S D+T++ RGII
Sbjct: 121 TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGII 157
>ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
gi|561031186|gb|ESW29765.1| hypothetical protein
PHAVU_002G097400g [Phaseolus vulgaris]
Length = 318
Score = 261 bits (666), Expect = 9e-68
Identities = 127/152 (83%), Positives = 144/152 (94%), Gaps = 1/152 (0%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEGA+Y R P++KIRE+KDDY +FELR+TD SIANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRVKC+ DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFSD-ASLDNTDSRGII 483
+SK+LYSSD +VVPVDFSD AS D+++SRG+I
Sbjct: 121 SSKDLYSSDPSVVPVDFSDPASTDSSESRGVI 152
>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 3-like [Citrus
sinensis] gi|557524889|gb|ESR36195.1| hypothetical
protein CICLE_v10028849mg [Citrus clementina]
Length = 319
Score = 260 bits (665), Expect = 1e-67
Identities = 129/153 (84%), Positives = 143/153 (93%), Gaps = 2/153 (1%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
M+GA+YQRFPK+KIRE+KDDY +FELR+TD S+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFSD-ASLDNTD-SRGII 483
TSK+LYSSDH+VVPVDF D A D+TD RGII
Sbjct: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGII 153
>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cucumis sativus]
Length = 320
Score = 260 bits (665), Expect = 1e-67
Identities = 127/154 (82%), Positives = 144/154 (93%), Gaps = 3/154 (1%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEG++YQRFPK+KIRE++DDY +FELR+TD S+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFSD---ASLDNTDSRGII 483
TSK+LYSSDHTVVPVDFSD A+ + D++GII
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGII 154
>gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 588
Score = 259 bits (662), Expect = 3e-67
Identities = 125/152 (82%), Positives = 143/152 (94%), Gaps = 1/152 (0%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEG +YQRFPK+KIRE+KDDY++FELR+TD S+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGKSYQRFPKVKIREMKDDYLKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTS+RAM+MRFSRDCDACDGDGQCE+CSVEF LR KCI+DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFLLRAKCISDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFSDASLDNT-DSRGII 483
TSK+LY++DHTVVP+DFSD + D + D RGII
Sbjct: 121 TSKDLYTADHTVVPIDFSDPAGDESGDQRGII 152
>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Fragaria vesca subsp. vesca]
Length = 318
Score = 257 bits (657), Expect = 1e-66
Identities = 123/152 (80%), Positives = 142/152 (93%), Gaps = 1/152 (0%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEG +YQRFP++KIRE++ DY++FELR+TD S+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLR +C +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFSDAS-LDNTDSRGII 483
TSKEL SSDHTVVPVDFSDAS + ++ RGII
Sbjct: 121 TSKELLSSDHTVVPVDFSDASGYEASEQRGII 152
>ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
gi|462397216|gb|EMJ03015.1| hypothetical protein
PRUPE_ppa008812mg [Prunus persica]
Length = 318
Score = 257 bits (656), Expect = 1e-66
Identities = 121/152 (79%), Positives = 143/152 (94%), Gaps = 1/152 (0%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEG +YQR P++KIRE++DDYM+FELR+TD S+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1 MEGKSYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTS+RAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFSD-ASLDNTDSRGII 483
TSK+L SSDHTVVPVDFSD A +++++ +GII
Sbjct: 121 TSKDLLSSDHTVVPVDFSDSAGMESSEQKGII 152
>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
[Medicago truncatula] gi|355508950|gb|AES90092.1|
DNA-directed RNA polymerase II subunit RPB3-A [Medicago
truncatula]
Length = 318
Score = 256 bits (654), Expect = 2e-66
Identities = 126/153 (82%), Positives = 141/153 (92%), Gaps = 2/153 (1%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEGA+Y R P++KIRE+KDDYM+FELR+TD S+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCI DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDF--SDASLDNTDSRGII 483
+SK+L SSDHTV PVD DAS++ +D RGII
Sbjct: 121 SSKDLISSDHTVTPVDVPGGDASIE-SDGRGII 152
>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
[Glycine max]
Length = 319
Score = 252 bits (643), Expect = 4e-65
Identities = 123/150 (82%), Positives = 138/150 (92%), Gaps = 1/150 (0%)
Frame = +1
Query: 37 GATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 216
G +Y R P++KIRE+KDDY +FELR+TD SIANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 4 GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63
Query: 217 NDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDVTS 396
NDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRVKC+ DQTLDVTS
Sbjct: 64 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123
Query: 397 KELYSSDHTVVPVDFSDAS-LDNTDSRGII 483
K+LYSSD TV PVDFSD S D+ ++RGII
Sbjct: 124 KDLYSSDPTVSPVDFSDPSATDSDNNRGII 153
>gb|AFK41039.1| unknown [Medicago truncatula]
Length = 318
Score = 251 bits (642), Expect = 6e-65
Identities = 125/153 (81%), Positives = 140/153 (91%), Gaps = 2/153 (1%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
MEGA+Y R P++KIRE+KDDYM+FELR+TD S+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVK I DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKRITDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDF--SDASLDNTDSRGII 483
+SK+L SSDHTV PVD DAS++ +D RGII
Sbjct: 121 SSKDLISSDHTVTPVDVPGGDASIE-SDGRGII 152
>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana] gi|11134646|sp|Q39211.1|NRPB3_ARATH RecName:
Full=DNA-directed RNA polymerases II, IV and V subunit
3; AltName: Full=DNA-directed RNA polymerase II 36 kDa
polypeptide A; AltName: Full=DNA-directed RNA polymerase
II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
Short=RNA polymerase II subunit B3-A
gi|514318|gb|AAB03741.1| RNA polymerase II third largest
subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
putative DNA-directed RNA polymerase II third largest
subunit [Arabidopsis thaliana]
gi|20465883|gb|AAM20046.1| putative DNA-directed RNA
polymerase II [Arabidopsis thaliana]
gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase
II subunit RPB3-A [Arabidopsis thaliana]
Length = 319
Score = 251 bits (640), Expect = 1e-64
Identities = 123/153 (80%), Positives = 143/153 (93%), Gaps = 2/153 (1%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
M+GATYQRFPKIKIRE+KDDY +FELRETDVS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEF L KC+ DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFS-DASL-DNTDSRGII 483
TS++LYS+D TV PVDF+ D+S+ D+++ +GII
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGII 153
>ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Capsella rubella]
gi|482566867|gb|EOA31056.1| hypothetical protein
CARUB_v10014208mg [Capsella rubella]
Length = 319
Score = 250 bits (638), Expect = 2e-64
Identities = 120/153 (78%), Positives = 141/153 (92%), Gaps = 2/153 (1%)
Frame = +1
Query: 31 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 210
M+GATYQRFPK+KIRE+KDDY +FELRETDVS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 390
VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEF L KC+ DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 391 TSKELYSSDHTVVPVDFS--DASLDNTDSRGII 483
TS++LYS+D TV PVDF+ ++ D+++ +GII
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSASDSSEHKGII 153
>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
[Glycine max]
Length = 320
Score = 249 bits (637), Expect = 2e-64
Identities = 122/151 (80%), Positives = 138/151 (91%), Gaps = 2/151 (1%)
Frame = +1
Query: 37 GATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 216
G +Y R P++KIRE+KDDY +FELR+TD SIANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 4 GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63
Query: 217 NDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDVTS 396
NDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRVKC+ DQTLDVTS
Sbjct: 64 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123
Query: 397 KELYSSDHTVVPVDFSDASLDNT--DSRGII 483
K+LYSSD TV PVDFSD S ++ ++RGII
Sbjct: 124 KDLYSSDPTVSPVDFSDPSATDSPDNNRGII 154