BLASTX nr result

ID: Mentha24_contig00049086 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00049086
         (412 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308446.1| hypothetical protein POPTR_0006s22220g [Popu...    65   8e-09
ref|XP_006481552.1| PREDICTED: serine/arginine-rich splicing fac...    63   4e-08
ref|XP_006430105.1| hypothetical protein CICLE_v10011213mg [Citr...    62   6e-08
ref|XP_007027914.1| Arginine/serine-rich zinc knuckle-containing...    58   1e-06
emb|CAN79169.1| hypothetical protein VITISV_012165 [Vitis vinifera]    56   5e-06

>ref|XP_002308446.1| hypothetical protein POPTR_0006s22220g [Populus trichocarpa]
           gi|222854422|gb|EEE91969.1| hypothetical protein
           POPTR_0006s22220g [Populus trichocarpa]
          Length = 693

 Score = 65.5 bits (158), Expect = 8e-09
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
 Frame = +3

Query: 15  RWDKQTVDPLNENYLENNLDFDRYEPHNSDSKKELDEHTELSPLVDSSSVKKFQDRRG-- 188
           RW +Q  +P NE  +EN ++FDRY+P+    ++  DE+ + +    + +++  Q+  G  
Sbjct: 174 RWGEQFHNPPNEVGVENGVEFDRYDPYEGFDRRNNDENLQKAYSGGTLALQSSQENAGGD 233

Query: 189 --------HFDNEKSEKRCYFCGDAGHERSNCPLEPKRHMSGSQGRLHPNVDTVPLGSQD 344
                      + KS++ CY CG +GH+  NCP E     + ++       D    G   
Sbjct: 234 HASDATLNRLSDVKSQETCYKCGGSGHKMRNCPQENASQRNVTRFDSRHTDDIHRSGRGK 293

Query: 345 SDREPSTSKSHQRLLRHRDS 404
            D E + S+S ++L   RD+
Sbjct: 294 GDPEKNGSRSWEKLQSSRDA 313


>ref|XP_006481552.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform X1
           [Citrus sinensis]
          Length = 685

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 37/172 (21%)
 Frame = +3

Query: 3   VNVSRWDKQTVDPLNENYLENNLDFDRYEPHNSDSKKELDEHTELSPLVDSSSVKKFQD- 179
           V+  RW  Q  D  N N +EN ++ DRYE +    +++  +   ++    S   +  QD 
Sbjct: 162 VDNDRWAGQLQDQPNGNSIENGMELDRYESYRGSDRRDEHKIHHIAYSDGSHVPQSSQDV 221

Query: 180 -RRGHF--------DNEKSEKRCYFCGDAGHERSNCPLE--------------------- 269
             RGH         ++ K +  CY CG +GH+  NCP +                     
Sbjct: 222 LTRGHLSEAPLDPSNHSKPQLTCYSCGGSGHKMRNCPRQITSQRKFKRLGHRHDDDIKRS 281

Query: 270 ------PKRHMSGSQGRLHPNVDTVPLGSQDSDREPSTSKSHQRLLRHRDSS 407
                  +R+ +GSQ    P  D++ +     + + S S  HQRL+++R SS
Sbjct: 282 CRAESNLERYEAGSQREQRPYRDSISVSGLGDEGKASGSGRHQRLIKNRSSS 333


>ref|XP_006430105.1| hypothetical protein CICLE_v10011213mg [Citrus clementina]
           gi|557532162|gb|ESR43345.1| hypothetical protein
           CICLE_v10011213mg [Citrus clementina]
          Length = 685

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 37/172 (21%)
 Frame = +3

Query: 3   VNVSRWDKQTVDPLNENYLENNLDFDRYEPHNSDSKKELDEHTELSPLVDSSSVKKFQD- 179
           V+  RW  Q  D  N N +EN ++ DRYE +    +++  +   ++    S   +  QD 
Sbjct: 162 VDNDRWAGQLQDQPNGNSIENGMELDRYECYRGSDRRDEHKIHHIAYSDGSHVQQSSQDV 221

Query: 180 -RRGHF--------DNEKSEKRCYFCGDAGHERSNCPLE--------------------- 269
             RGH         ++ K +  CY CG +GH+  NCP +                     
Sbjct: 222 LTRGHLSEAPLDPSNHSKPQLTCYSCGGSGHKMRNCPRQITSQRKFKRLGHRHDDDIKRS 281

Query: 270 ------PKRHMSGSQGRLHPNVDTVPLGSQDSDREPSTSKSHQRLLRHRDSS 407
                  +R+ +GSQ    P  D++ +     + + S S  HQRL+++R SS
Sbjct: 282 CRAESNLERYEAGSQREQRPYRDSISVSGLGDEGKASGSGRHQRLIKNRSSS 333


>ref|XP_007027914.1| Arginine/serine-rich zinc knuckle-containing protein 33, putative
           isoform 1 [Theobroma cacao]
           gi|590632704|ref|XP_007027915.1| Arginine/serine-rich
           zinc knuckle-containing protein 33, putative isoform 1
           [Theobroma cacao] gi|508716519|gb|EOY08416.1|
           Arginine/serine-rich zinc knuckle-containing protein 33,
           putative isoform 1 [Theobroma cacao]
           gi|508716520|gb|EOY08417.1| Arginine/serine-rich zinc
           knuckle-containing protein 33, putative isoform 1
           [Theobroma cacao]
          Length = 674

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
 Frame = +3

Query: 3   VNVSRWDKQTVDPLNENYLENNLDFDRYEPHNS-DSKKELDEHTELSPLVDSSSVKKFQD 179
           V+  RWD +  +  + N +E+ ++FDRY  ++  D +     ++  SP   S   K  ++
Sbjct: 169 VDGDRWDGKRHELSDGNNVEHEMEFDRYIGYDKKDDENNRIVYSSGSPAAQSPQKKIVRE 228

Query: 180 -----RRGHFDNEKSEKRCYFCGDAGHERSNCPLE--PKRHMSGSQGRLHPNVDTVPLGS 338
                   H ++ K+++ CY CG  GH + NCP E    R+ S    R H  + +     
Sbjct: 229 LISEGTLNHLNDSKAQQACYSCGALGHRKHNCPRENTSGRYFSRFDRRHHDEIGSSSRAK 288

Query: 339 QDSDREPSTSK 371
              D++P T+K
Sbjct: 289 LQQDKDPLTTK 299


>emb|CAN79169.1| hypothetical protein VITISV_012165 [Vitis vinifera]
          Length = 685

 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 38/173 (21%)
 Frame = +3

Query: 3   VNVSRWDKQTVDPLNENYLENNLDFDRYEPHNSDSKKELDEHTELSPLVDSSSVKKFQDR 182
           V+  RW +   +  N N LEN ++FDRYEP++ + +    ++ +++    S +++  Q++
Sbjct: 160 VDNDRWGQHVGNLSNGNGLENGMEFDRYEPYHGEDRSNEXDNIQMTYSGGSPTLRSTQEK 219

Query: 183 RGH----------FDNEKSEKRCYFCGDAGHERSNC-----------PLEPKR----HMS 287
            G            +  K +  CY CG  GH+  NC             + KR    ++ 
Sbjct: 220 TGREQIGDAILLPSNIPKPQLXCYHCGRPGHKMRNCLQGNASQKKFSRFDLKRNDEINLR 279

Query: 288 GSQGRLHPNV-------------DTVPLGSQDSDREPSTSKSHQRLLRHRDSS 407
           GS G   P               DT+ L    +DR+ S S  ++RL+R   S+
Sbjct: 280 GSGGGELPRTGSKPHEKGHSGSRDTISLRWHTNDRKASGSGKYRRLIRSGSSA 332


Top