BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00046131
         (634 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit famil...   202   7e-50
ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycin...   201   2e-49
ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycin...   201   2e-49
ref|XP_006381734.1| DNA-directed RNA polymerase family protein [...   200   3e-49
ref|XP_007219752.1| hypothetical protein PRUPE_ppa024345mg [Prun...   198   1e-48
ref|XP_007152860.1| hypothetical protein PHAVU_004G166200g [Phas...   198   1e-48
ref|XP_004511874.1| PREDICTED: DNA-directed RNA polymerases I, I...   197   2e-48
ref|XP_004511328.1| PREDICTED: DNA-directed RNA polymerases I, I...   197   2e-48
emb|CBI28035.3| unnamed protein product [Vitis vinifera]              197   2e-48
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   197   2e-48
ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citr...   196   4e-48
ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Caps...   196   4e-48
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   196   4e-48
ref|XP_007218418.1| hypothetical protein PRUPE_ppa011542mg [Prun...   195   8e-48
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, I...   195   1e-47
ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis ...   195   1e-47
ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III ...   195   1e-47
gb|AFK38034.1| unknown [Lotus japonicus]                              194   1e-47
ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutr...   194   2e-47
gb|EYU34199.1| hypothetical protein MIMGU_mgv1a013932mg [Mimulus...   192   5e-47

>ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao] gi|508783467|gb|EOY30723.1| Eukaryotic
           rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao]
          Length = 206

 Score =  202 bits (514), Expect = 7e-50
 Identities = 101/159 (63%), Positives = 130/159 (81%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKP-DGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+I KTK  D SD+IYVFF D+ K  +GVK ++   N+MK  NV+RA++V ++ L+
Sbjct: 50  KREDLVINKTKRNDNSDQIYVFFPDEAK--VGVKTMKTYTNRMKSENVFRAVLVVQQNLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  INE+S   H+E F E EL+VN+  H L+P+HQ+LT EEKK+LL+RYTVKETQLP
Sbjct: 108 PFARTCINEISSKFHLEVFQESELLVNVKEHSLVPEHQVLTNEEKKTLLQRYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQV+DP+A+Y+GLKRG+VVKIIRPSETAG+YVTYR+VV
Sbjct: 168 RIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 206


>ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
           gi|255627545|gb|ACU14117.1| unknown [Glycine max]
          Length = 206

 Score =  201 bits (510), Expect = 2e-49
 Identities = 104/159 (65%), Positives = 128/159 (80%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKPDGS-DKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+I K+K D S D+IYVFF D+   K+GVK ++   N+M   NVYRAI+V +  L+
Sbjct: 50  KREDLVINKSKKDNSGDQIYVFFPDE--PKVGVKTMKTYTNRMNSENVYRAILVTQTNLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  I+E+S   H+E F E EL+VNI  H+L+P+HQ+LT  EKK+LLERYTVKETQLP
Sbjct: 108 PFARTCISEISSKFHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDPVA+Y+GLKRG+VVKIIRPSETAG+YVTYRFVV
Sbjct: 168 RIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206


>ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
           gi|255625665|gb|ACU13177.1| unknown [Glycine max]
          Length = 206

 Score =  201 bits (510), Expect = 2e-49
 Identities = 104/159 (65%), Positives = 128/159 (80%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKPDGS-DKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+I K+K D S D+IYVFF D+   K+GVK ++   N+M   NVYRAI+V +  L+
Sbjct: 50  KREDLVINKSKKDNSGDQIYVFFPDE--PKVGVKTMKTYTNRMNSENVYRAILVTQTNLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  I+E+S   H+E F E EL+VNI  H+L+P+HQ+LT  EKK+LLERYTVKETQLP
Sbjct: 108 PFARTCISEISSKFHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDPVA+Y+GLKRG+VVKIIRPSETAG+YVTYRFVV
Sbjct: 168 RIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206


>ref|XP_006381734.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|550336487|gb|ERP59531.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 206

 Score =  200 bits (508), Expect = 3e-49
 Identities = 101/159 (63%), Positives = 130/159 (81%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKP-DGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+I KTK  D SD+IYVFF ++ K  +GVK ++   N+MK  NV+RAI+V ++ L+
Sbjct: 50  KREDLVINKTKRNDSSDQIYVFFPEEAK--VGVKTMKTYTNRMKSENVFRAILVVQQNLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  INE+S   H+E F E EL+VNI  H L+P+HQ+L+ EEKK+LLERYTVKETQLP
Sbjct: 108 PFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQ+TDP+A+Y+GLKRG+VVKIIRPSETAG+YVTYR+V+
Sbjct: 168 RIQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVI 206


>ref|XP_007219752.1| hypothetical protein PRUPE_ppa024345mg [Prunus persica]
           gi|462416214|gb|EMJ20951.1| hypothetical protein
           PRUPE_ppa024345mg [Prunus persica]
          Length = 206

 Score =  198 bits (504), Expect = 1e-48
 Identities = 101/159 (63%), Positives = 130/159 (81%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKP-DGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL I KTK  D +D++YVFF ++   K+GVK I+   N+MK +NV RAI+V ++ ++
Sbjct: 50  KREDLTINKTKRNDSTDQLYVFFPEE--PKVGVKTIKTYTNRMKSDNVARAILVTQQNMT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  I+E+S   H+E F E ELMVN++ H L+P+HQLLT EEKK+LLERYTVKETQLP
Sbjct: 108 PMARTCISEISSKFHMEVFQEPELMVNVTEHVLVPEHQLLTNEEKKTLLERYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQ+TDPVAKY+GLKRG+V+KIIRPSETAG+Y+TYR+VV
Sbjct: 168 RIQLTDPVAKYYGLKRGQVMKIIRPSETAGRYITYRYVV 206


>ref|XP_007152860.1| hypothetical protein PHAVU_004G166200g [Phaseolus vulgaris]
           gi|561026169|gb|ESW24854.1| hypothetical protein
           PHAVU_004G166200g [Phaseolus vulgaris]
          Length = 207

 Score =  198 bits (503), Expect = 1e-48
 Identities = 101/159 (63%), Positives = 128/159 (80%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKPDGS-DKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL + K+K D S D+IYVFF D+ K  +GVK ++   N+M  +NVYRAI+V +  L+
Sbjct: 51  KREDLDLNKSKKDNSSDQIYVFFPDEAK--VGVKTMKTYTNRMNNDNVYRAILVTQTNLT 108

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  ++E+S   H+E F E EL+VNI  H+L+P+HQ+LT  EKK+L+ERYTVKETQLP
Sbjct: 109 PFARTCVSEISSKFHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLIERYTVKETQLP 168

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDPVA+Y+GLKRG+VVKIIRPSETAG+YVTYRFVV
Sbjct: 169 RIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 207


>ref|XP_004511874.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cicer arietinum]
          Length = 206

 Score =  197 bits (502), Expect = 2e-48
 Identities = 103/159 (64%), Positives = 126/159 (79%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKPDG-SDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+I KTK D  SD+IYVFF ++   K+GVK ++   N+M   NVYRAI+V +  L+
Sbjct: 50  KREDLVINKTKKDKPSDQIYVFFPEE--VKVGVKTMKTYINRMNSENVYRAILVCQTSLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  + E+S   H+E F E EL+VNI  H L+P+HQ+LT  EKK+LLERYTVKETQLP
Sbjct: 108 PFARTSVAEISSKFHLEVFQEAELLVNIKDHVLVPEHQVLTDTEKKTLLERYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDPVA+Y+GLKRG+VVKIIRPSETAG+YVTYRFVV
Sbjct: 168 RIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206


>ref|XP_004511328.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cicer arietinum]
          Length = 206

 Score =  197 bits (502), Expect = 2e-48
 Identities = 104/159 (65%), Positives = 126/159 (79%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKPDG-SDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+I KTK D  SD+IYVFF ++   K+GVK ++   N+M   NVYRAI+V +  L+
Sbjct: 50  KREDLVINKTKKDKPSDQIYVFFPEE--VKVGVKTMKTYTNRMNSENVYRAILVCQTSLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  I E+S   H+E F E EL+VNI  H L+P+HQ+LT  EKK+LLERYTVKETQLP
Sbjct: 108 PFARTCIAEVSSKFHLEVFQEAELLVNIKEHVLVPEHQVLTETEKKTLLERYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDPVA+Y+GLKRG+VVKIIRPSETAG+YVTYRFVV
Sbjct: 168 RIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206


>emb|CBI28035.3| unnamed protein product [Vitis vinifera]
          Length = 186

 Score =  197 bits (502), Expect = 2e-48
 Identities = 101/159 (63%), Positives = 128/159 (80%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTK-PDGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+I K K  D SD+IYVFF ++   K+GVK ++   N+MK  NV+RAI+V ++ L+
Sbjct: 30  KREDLVINKAKRTDSSDQIYVFFPEE--QKVGVKTMKTYTNRMKSENVFRAILVVQQNLT 87

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  INE+S   H+E F E EL+VNI  H L+P+HQ+LT EEKK+LLERYTVKETQLP
Sbjct: 88  PFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLP 147

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQV+DP+A+Y GLKRG+VVKIIRPSETAG+Y+TYR+VV
Sbjct: 148 RIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYVV 186


>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  197 bits (502), Expect = 2e-48
 Identities = 101/159 (63%), Positives = 128/159 (80%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTK-PDGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+I K K  D SD+IYVFF ++   K+GVK ++   N+MK  NV+RAI+V ++ L+
Sbjct: 50  KREDLVINKAKRTDSSDQIYVFFPEE--QKVGVKTMKTYTNRMKSENVFRAILVVQQNLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  INE+S   H+E F E EL+VNI  H L+P+HQ+LT EEKK+LLERYTVKETQLP
Sbjct: 108 PFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQV+DP+A+Y GLKRG+VVKIIRPSETAG+Y+TYR+VV
Sbjct: 168 RIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYVV 206


>ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citrus clementina]
           gi|567918420|ref|XP_006451216.1| hypothetical protein
           CICLE_v10009504mg [Citrus clementina]
           gi|568843556|ref|XP_006475670.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X1
           [Citrus sinensis] gi|568843558|ref|XP_006475671.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A-like isoform X2 [Citrus sinensis]
           gi|568843560|ref|XP_006475672.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X3
           [Citrus sinensis] gi|557554441|gb|ESR64455.1|
           hypothetical protein CICLE_v10009504mg [Citrus
           clementina] gi|557554442|gb|ESR64456.1| hypothetical
           protein CICLE_v10009504mg [Citrus clementina]
          Length = 206

 Score =  196 bits (499), Expect = 4e-48
 Identities = 101/159 (63%), Positives = 128/159 (80%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKT-KPDGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+I K  + D SD+IYVFF D+   K+GVK ++   N+MK  NV+RAI+V ++ L+
Sbjct: 50  KREDLVINKALRNDSSDQIYVFFPDE--QKVGVKTMKTYTNRMKSENVFRAILVVQQNLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  I E+S   H+E F E EL+VNI  H L+P+HQ+LT EEKK+LL+RYTVKETQLP
Sbjct: 108 PFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDP+A+Y+GLKRG+VVKIIRPSETAG+YVTYR+VV
Sbjct: 168 RIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 206


>ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Capsella rubella]
           gi|482567281|gb|EOA31470.1| hypothetical protein
           CARUB_v10014656mg [Capsella rubella]
          Length = 205

 Score =  196 bits (499), Expect = 4e-48
 Identities = 100/159 (62%), Positives = 127/159 (79%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKP-DGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+  K K  D SD++Y+FF D+ K  +GVK ++   N+MK  NVYRAI+V ++ L+
Sbjct: 49  KREDLVTLKAKRNDNSDQLYIFFPDEAK--VGVKTMKMYTNRMKSENVYRAILVVQQNLT 106

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  I+E+S   H+E F E E++VNI  H L+P+HQ+LT EEKK+LLERYTVKETQLP
Sbjct: 107 PFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLP 166

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDP+A+Y GLKRG+VVKIIRPSETAG+YVTYR+VV
Sbjct: 167 RIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
           gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 205

 Score =  196 bits (499), Expect = 4e-48
 Identities = 100/159 (62%), Positives = 127/159 (79%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKP-DGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+  K K  D SD++Y+FF D+ K  +GVK ++   N+MK  NVYRAI+V ++ L+
Sbjct: 49  KREDLVTLKVKRNDNSDQLYIFFPDEAK--VGVKTMKMYTNRMKSENVYRAILVVQQNLT 106

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  I+E+S   H+E F E E++VNI  H L+P+HQ+LT EEKK+LLERYTVKETQLP
Sbjct: 107 PFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLP 166

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDP+A+Y GLKRG+VVKIIRPSETAG+YVTYR+VV
Sbjct: 167 RIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205


>ref|XP_007218418.1| hypothetical protein PRUPE_ppa011542mg [Prunus persica]
           gi|462414880|gb|EMJ19617.1| hypothetical protein
           PRUPE_ppa011542mg [Prunus persica]
          Length = 206

 Score =  195 bits (496), Expect = 8e-48
 Identities = 99/159 (62%), Positives = 127/159 (79%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTK-PDGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL I KTK  D SD+IYVFF ++   K+GVK ++   N+MK  NV RA++V ++ L+
Sbjct: 50  KREDLTINKTKRSDSSDQIYVFFPEE--PKVGVKTMKTYTNRMKSENVLRAVLVTQQNLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P A+  I+E+S   H+E F E EL+VNI  H L+P+H +LT EEKK+LLERYTVKETQLP
Sbjct: 108 PFAKTCISEISSKFHLEVFQEAELLVNIKEHVLVPEHLVLTTEEKKTLLERYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDP+AKY+GLKRG+VVKIIRPSETAG+Y+TYR+V+
Sbjct: 168 RIQVTDPIAKYYGLKRGQVVKIIRPSETAGRYITYRYVI 206


>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
          Length = 207

 Score =  195 bits (495), Expect = 1e-47
 Identities = 102/160 (63%), Positives = 130/160 (81%), Gaps = 2/160 (1%)
 Frame = +3

Query: 3   KREDLMITKTKP-DGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KRED++I K+K  D SD+IYVFF ++ K  +G+KP++    +MK  NV+RAI+V ++ L+
Sbjct: 50  KREDIVINKSKRNDSSDQIYVFFPEEAK--VGIKPLKTYTTRMKSENVFRAILVVQQNLT 107

Query: 180 PGARAGINEL-SKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQL 356
           P ARA ++E  SK  H+E F E EL+VNI  H L+P+HQLL  EEKK+LLERYTVKETQL
Sbjct: 108 PFARACMSEATSKSFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQL 167

Query: 357 PRIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           PRIQVTDPVA+Y+GLKRG+VVKIIRPSETAG+YVTYR+VV
Sbjct: 168 PRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 207


>ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis thaliana]
           gi|75275037|sp|O81098.1|RPB5A_ARATH RecName:
           Full=DNA-directed RNA polymerases II and IV subunit 5A;
           Short=RPB5a; AltName: Full=DNA-directed RNA polymerase
           II subunit E; AltName: Full=RNA polymerase I, II and III
           24.3 kDa subunit; Short=AtRPB24.3
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           NRPB5 [Arabidopsis thaliana]
          Length = 205

 Score =  195 bits (495), Expect = 1e-47
 Identities = 99/159 (62%), Positives = 127/159 (79%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKP-DGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+  K K  D SD++Y+FF D+ K  +GVK ++   N+MK  NV+RAI+V ++ L+
Sbjct: 49  KREDLVTLKAKRNDNSDQLYIFFPDEAK--VGVKTMKMYTNRMKSENVFRAILVVQQNLT 106

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  I+E+S   H+E F E E++VNI  H L+P+HQ+LT EEKK+LLERYTVKETQLP
Sbjct: 107 PFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLP 166

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDP+A+Y GLKRG+VVKIIRPSETAG+YVTYR+VV
Sbjct: 167 RIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205


>ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
           [Medicago truncatula] gi|355511987|gb|AES93610.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 [Medicago truncatula]
          Length = 410

 Score =  195 bits (495), Expect = 1e-47
 Identities = 100/159 (62%), Positives = 126/159 (79%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKPDG-SDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+I KTK D  SD+IYVFF ++ K  +GVK ++   N+M   NVYRAI+V +  L+
Sbjct: 254 KREDLVINKTKKDKPSDQIYVFFPEEAK--VGVKTMKTYTNRMNSENVYRAILVCQTSLT 311

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P A+  ++E++   H+E F E EL+VNI  H L+P+HQ+L   EKK+LLERYTVKETQLP
Sbjct: 312 PFAKTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLP 371

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDPVA+Y+GLKRG+VVKIIRPSETAG+YVTYRFVV
Sbjct: 372 RIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 410


>gb|AFK38034.1| unknown [Lotus japonicus]
          Length = 206

 Score =  194 bits (494), Expect = 1e-47
 Identities = 100/159 (62%), Positives = 125/159 (78%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKPDG-SDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL I KTK DG SD+IYVFF D+   K+GVK ++   N+M   NV+RAI+V +  L+
Sbjct: 50  KREDLTINKTKKDGPSDQIYVFFPDE--PKVGVKTMKTYTNRMNSENVFRAILVCQSNLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P A+  I+E+S    +E F E EL+VNI  H L+P+HQ+L   EKK+LLERYTVKETQLP
Sbjct: 108 PFAKTCISEMSSKFQLEVFQEAELLVNIKEHVLVPEHQILNETEKKTLLERYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQ+TDPVA+Y+GLKRG+VVKIIRPSETAG+Y+TYRFVV
Sbjct: 168 RIQITDPVARYYGLKRGQVVKIIRPSETAGRYITYRFVV 206


>ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutrema salsugineum]
           gi|557107329|gb|ESQ47636.1| hypothetical protein
           EUTSA_v10021534mg [Eutrema salsugineum]
          Length = 206

 Score =  194 bits (492), Expect = 2e-47
 Identities = 98/159 (61%), Positives = 127/159 (79%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITKTKP-DGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+  K K  D +D++Y+FF D+ K  +GVK ++   N+MK  NV+RAI+V ++ L+
Sbjct: 50  KREDLVTLKAKRNDNNDQLYIFFPDEAK--VGVKTMKMYTNRMKSENVFRAILVVQQNLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  I+E+S   H+E F E E++VNI  H L+P+HQ+LT EEKK+LLERYTVKETQLP
Sbjct: 108 PFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQVTDP+A+Y GLKRG+VVKIIRPSETAG+YVTYR+VV
Sbjct: 168 RIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 206


>gb|EYU34199.1| hypothetical protein MIMGU_mgv1a013932mg [Mimulus guttatus]
          Length = 206

 Score =  192 bits (489), Expect = 5e-47
 Identities = 94/159 (59%), Positives = 129/159 (81%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   KREDLMITK-TKPDGSDKIYVFFVDDGKTKIGVKPIREIANQMKQNNVYRAIIVGKKVLS 179
           KREDL+I K  + + SD+IY+FF ++   K+GVK ++   N+MK+  V+RA+++ ++ L+
Sbjct: 50  KREDLVINKGLRNNSSDQIYIFFPEE--PKVGVKTMKTYTNRMKEEGVHRAVLIVQQNLT 107

Query: 180 PGARAGINELSKICHVEDFLEDELMVNISRHKLIPQHQLLTPEEKKSLLERYTVKETQLP 359
           P AR  I+E+S   H+E F E E+++NI  H L+P+HQ+LTPEEKK+LLERYTVKETQLP
Sbjct: 108 PFARTCISEISTKFHLEVFQEAEMLINIKEHVLVPEHQVLTPEEKKTLLERYTVKETQLP 167

Query: 360 RIQVTDPVAKYHGLKRGEVVKIIRPSETAGKYVTYRFVV 476
           RIQ+TDP+A+Y+GLKRG VVKIIRPSETAG+YVTYR+VV
Sbjct: 168 RIQITDPIARYYGLKRGHVVKIIRPSETAGRYVTYRYVV 206