BLASTX nr result

ID: Mentha24_contig00042758 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00042758
         (488 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004935358.1| ORF1 gene product [Actinidia virus B] gi|356...   131   8e-29
gb|AET36885.1| putative replicase, partial [Actinidia virus A]        131   1e-28
gb|ADE62745.1| replicase [Grapevine virus B]                          110   3e-22
ref|NP_619654.1| putative replicase [Grapevine virus B] gi|10611...   107   2e-21
gb|ABU62819.1| replicase [Grapevine virus B]                          106   3e-21
gb|AFV34758.1| replicase [Grapevine virus B]                          106   4e-21
gb|ABG37965.1| putative replicase [Grapevine virus A]                  65   7e-09
gb|ABH07008.1| putative replicase [Grapevine virus A]                  64   2e-08
gb|ADG57798.1| replicase [Grapevine virus B]                           62   6e-08

>ref|YP_004935358.1| ORF1 gene product [Actinidia virus B] gi|356711544|gb|AET36890.1|
           putative replicase [Actinidia virus B]
          Length = 1707

 Score =  131 bits (330), Expect = 8e-29
 Identities = 63/163 (38%), Positives = 100/163 (61%), Gaps = 1/163 (0%)
 Frame = -1

Query: 488 RIQDTKLFDSMGNFRVKEGIWDSLCAALGDEVTYVFDKKKYDVANLERFIVRCEPAVLQI 309
           ++QD KL+DSMG F +KE +W+  C ALGD +TY+ DK++Y V+++E+FI+RC  A + I
Sbjct: 358 QLQDAKLYDSMGTFNLKEAVWNGFCGALGDSITYLIDKEQYKVSSMEKFILRCSSARITI 417

Query: 308 PRYFRDRRNTKNSLVPELGASWSGESEIEWDDCYWANLLSMDCEPQPYALV-DEIIEPRL 132
            R FRD +  +  L PELG SW+GE + E  + Y   +   D E  PY+L  DEI++ + 
Sbjct: 418 TRTFRDYQPRRTKLGPELGTSWTGEEDEELQEIYHVVVKEGDRERTPYSLKGDEILDNKE 477

Query: 131 VSHIGYIECARIIMAESCPPATELGKKVAITPVDDFMGLRSFI 3
                 I+CAR+ + E+      + + +  +P+D F  +R F+
Sbjct: 478 RRSDLMIQCARMDLLENTKELPSINEPMVFSPIDGFRSMRRFM 520


>gb|AET36885.1| putative replicase, partial [Actinidia virus A]
          Length = 1714

 Score =  131 bits (329), Expect = 1e-28
 Identities = 66/163 (40%), Positives = 100/163 (61%), Gaps = 1/163 (0%)
 Frame = -1

Query: 488 RIQDTKLFDSMGNFRVKEGIWDSLCAALGDEVTYVFDKKKYDVANLERFIVRCEPAVLQI 309
           ++Q+ KL+DSMG+F ++E IW+SLC ALGD +TY  DK+KY + ++ERFI+ C  A + I
Sbjct: 354 QLQEAKLYDSMGSFSLQEAIWNSLCGALGDSITYFMDKQKYKMMSMERFIMGCGSAKISI 413

Query: 308 PRYFRDRRNTKNSLVPELGASWSGESEIEWDDCYWANLLSMDCEPQPYAL-VDEIIEPRL 132
            R FRD    ++ L P +GASW+G  + EW++ Y  NL   D     Y L  +EII  + 
Sbjct: 414 QREFRDFHAQRDKLCPVIGASWTGVEDPEWEEIYLRNLQEQDVPGTSYNLHGEEIINRKE 473

Query: 131 VSHIGYIECARIIMAESCPPATELGKKVAITPVDDFMGLRSFI 3
           +     + CAR+ +  +     E+  +V I+P+D+F  LR FI
Sbjct: 474 LRSDLMVFCARLDLINNTGTVEEMNIEVLISPLDNFKALRLFI 516


>gb|ADE62745.1| replicase [Grapevine virus B]
          Length = 1709

 Score =  110 bits (274), Expect = 3e-22
 Identities = 59/160 (36%), Positives = 93/160 (58%), Gaps = 1/160 (0%)
 Frame = -1

Query: 488 RIQDTKLFDSMGNFRVKEGIWDSLCAALGDEVTYVFDKKKYDVANLERFIVRCEPAVLQI 309
           +IQ+TKL+D MGNF +KE IW ++ AA+GD + Y FDK ++   +LE FI+ C PA +++
Sbjct: 357 QIQETKLYDKMGNFSLKECIWSAVSAAMGDSLVYFFDKARFYNESLESFILNCGPAKIEV 416

Query: 308 PRYFRDRRNTKNSLVPELGASWSGESEIEWDDCYWANLLSMDCEPQPYALV-DEIIEPRL 132
            R FR+     + + P L AS+ G  +   D+ Y  N+   D   +PY++  DE+I  R 
Sbjct: 417 KRVFREAVYRNHGVCPHL-ASFDGAHDCIIDELYLQNIRDQDRAREPYSIPRDEVIGNRN 475

Query: 131 VSHIGYIECARIIMAESCPPATELGKKVAITPVDDFMGLR 12
              I  IE  R++         E+ ++V ++P+DDF  LR
Sbjct: 476 SCRISLIEMGRVMHNFYQEMKVEINREVIVSPLDDFRALR 515


>ref|NP_619654.1| putative replicase [Grapevine virus B] gi|1061119|emb|CAA53196.1|
           putative replicase [Grapevine virus B]
          Length = 1707

 Score =  107 bits (266), Expect = 2e-21
 Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 1/160 (0%)
 Frame = -1

Query: 488 RIQDTKLFDSMGNFRVKEGIWDSLCAALGDEVTYVFDKKKYDVANLERFIVRCEPAVLQI 309
           +IQ+TKL+D MGNF +KE IW ++ +A+GD + Y FDK ++   +LE FI+ C PA ++I
Sbjct: 356 QIQETKLYDKMGNFSLKECIWSAVSSAMGDSLVYFFDKARFYNESLESFILNCGPAKIEI 415

Query: 308 PRYFRDRRNTKNSLVPELGASWSGESEIEWDDCYWANLLSMDCEPQPYALVD-EIIEPRL 132
            R +RD       + P L  S+ G  +   D+ Y  ++  MD   +PY+L   E++E  +
Sbjct: 416 KRVYRDAVYRNQGVCPHL-VSFDGSPDGVMDELYLQHIRDMDRSSEPYSLTSAEVLESSI 474

Query: 131 VSHIGYIECARIIMAESCPPATELGKKVAITPVDDFMGLR 12
              I  IE  R ++         + ++V ++P+DDF  +R
Sbjct: 475 GCRISLIEMGRAMLKFHQQQDVMINERVVLSPLDDFRSMR 514


>gb|ABU62819.1| replicase [Grapevine virus B]
          Length = 1709

 Score =  106 bits (265), Expect = 3e-21
 Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 1/160 (0%)
 Frame = -1

Query: 488 RIQDTKLFDSMGNFRVKEGIWDSLCAALGDEVTYVFDKKKYDVANLERFIVRCEPAVLQI 309
           +IQ+TKL+D MGNF +KE IW ++ AA+G+ + Y FDK ++   +LE FI+ C PA ++I
Sbjct: 357 QIQETKLYDKMGNFSLKECIWSAVSAAMGNSLVYFFDKARFYNESLESFILNCGPAKIEI 416

Query: 308 PRYFRDRRNTKNSLVPELGASWSGESEIEWDDCYWANLLSMDCEPQPYAL-VDEIIEPRL 132
            R FR+       + P L  S+ G  +   D+ Y  N+   D   +PY++   ++I  R 
Sbjct: 417 KRIFREAVYRNKGVCPHL-VSFDGAPDCVIDELYLQNIRDQDRAREPYSIPQSDVIGKRN 475

Query: 131 VSHIGYIECARIIMAESCPPATELGKKVAITPVDDFMGLR 12
              I  IE  R++         E+ ++V ++P+DDF  LR
Sbjct: 476 CCRISLIEMGRVVHRYHQERKVEINREVVVSPLDDFKALR 515


>gb|AFV34758.1| replicase [Grapevine virus B]
          Length = 1709

 Score =  106 bits (264), Expect = 4e-21
 Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 1/160 (0%)
 Frame = -1

Query: 488 RIQDTKLFDSMGNFRVKEGIWDSLCAALGDEVTYVFDKKKYDVANLERFIVRCEPAVLQI 309
           +IQ+TKL+D MGNF +KE IW ++ AA+GD + Y FDK ++   +LE FI+ C PA +++
Sbjct: 357 QIQETKLYDKMGNFSLKECIWSAVSAAMGDSLVYFFDKARFYNESLESFILNCGPAKIEV 416

Query: 308 PRYFRDRRNTKNSLVPELGASWSGESEIEWDDCYWANLLSMDCEPQPYAL-VDEIIEPRL 132
            R FR+     N + P L AS+ G  +   D+ Y  N+   D   +PY++   E++  + 
Sbjct: 417 KRVFREAVYRNNGVCPHL-ASFDGNPDCIIDELYLQNIRDQDRMREPYSIPKGELVNGQT 475

Query: 131 VSHIGYIECARIIMAESCPPATELGKKVAITPVDDFMGLR 12
              I  IE  R +         E+ ++V ++P+D+F  LR
Sbjct: 476 RCRISLIEMGRAVHRFHQERKVEINREVIVSPLDNFKALR 515


>gb|ABG37965.1| putative replicase [Grapevine virus A]
          Length = 1710

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 2/164 (1%)
 Frame = -1

Query: 488 RIQDTKLFDSMGNFRVKEGIWDSLCAALGDEVTYVFDKKKYDVANLERFIVRCEPAVLQI 309
           +I+DT L+D MGN  +K  + ++     G+  T +F+K +YD   LE+FI  CE     I
Sbjct: 356 QIKDTGLYDRMGNPSIKSLLSEAFHDIAGNLFTRLFNKPEYDARCLEKFIRACETTEFYI 415

Query: 308 PRYFRDRRNTKNSLVPELGASWSGESEIE-WDDCYWANLLSMDCEPQPY-ALVDEIIEPR 135
           PR F +R    +SL+ +    W  + E    D+     L   D EP+PY A V      R
Sbjct: 416 PRRFMERVYRGSSLMVQRVVDWVEDEEANALDEVNLQELCKNDREPEPYSASVSNGENRR 475

Query: 134 LVSHIGYIECARIIMAESCPPATELGKKVAITPVDDFMGLRSFI 3
               I  I  +  ++ ES   + E+ + V +      + LR F+
Sbjct: 476 AYVPITRIMRSHALILESA-KSVEINRVVVVCSARSLLNLRLFL 518


>gb|ABH07008.1| putative replicase [Grapevine virus A]
          Length = 1710

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 2/164 (1%)
 Frame = -1

Query: 488 RIQDTKLFDSMGNFRVKEGIWDSLCAALGDEVTYVFDKKKYDVANLERFIVRCEPAVLQI 309
           +I+DT L+D MGN  +K  + ++     G+  T +F+K +YD   LE+FI  CE     I
Sbjct: 356 QIKDTGLYDRMGNPSIKSLLSEAFHDIAGNLFTRLFNKPEYDARCLEKFIRACETTEFYI 415

Query: 308 PRYFRDRRNTKNSLVPELGASWSGESEIE-WDDCYWANLLSMDCEPQPY-ALVDEIIEPR 135
           PR F +R    +SL+ +    W  + E    D+     L   D  P+PY ALV      R
Sbjct: 416 PRKFMERVYRGSSLMVQRVVDWVEDEEANALDEVNLQELCKNDRNPEPYGALVLNGDNRR 475

Query: 134 LVSHIGYIECARIIMAESCPPATELGKKVAITPVDDFMGLRSFI 3
               I  I  +  ++ ES   + E+ + V +      + LR F+
Sbjct: 476 AYVPITRIMRSHALILESA-RSVEINRVVVVCSARSLLNLRMFL 518


>gb|ADG57798.1| replicase [Grapevine virus B]
          Length = 243

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
 Frame = -1

Query: 383 FDKKKYDVANLERFIVRCEPAVLQIPRYFRDRRNTKNSLVPELGASWSGESEIEWDDCYW 204
           FDK ++   +LE FI+ C PA ++I R +RD       + P L  S+ G  +   D+ Y 
Sbjct: 2   FDKARFYNESLESFILNCGPAKIEIKRVYRDAVYRNQGVCPHL-TSFDGSPDAVMDELYL 60

Query: 203 ANLLSMDCEPQPYALVD-EIIEPRLVSHIGYIECARIIMAESCPPATELGKKVAITPVDD 27
             +  MD   +PY+L   E++       I  IE  R ++         + ++V ++P+DD
Sbjct: 61  QCIRDMDRCSEPYSLTSAEVLGGPTRCRISLIEMGREVLRYHQQQEVVINERVVLSPLDD 120

Query: 26  FMGLR 12
           F G+R
Sbjct: 121 FKGMR 125


Top