BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00042222
         (494 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_733975.1| capsid protein [Cycas necrotic stunt virus]           78   3e-21
ref|NP_620620.2| polyprotien 2 [Cycas necrotic stunt virus] gi|1...    99   6e-19
dbj|BAE93234.1| coat protein [Cycas necrotic stunt virus]              99   6e-19
gb|AEN25476.2| polyprotein 2 [Cycas necrotic stunt virus]              94   2e-17

>ref|NP_733975.1| capsid protein [Cycas necrotic stunt virus]
          Length = 564

 Score = 78.2 bits (191), Expect(2) = 3e-21
 Identities = 38/49 (77%), Positives = 39/49 (79%)
 Frame = -2

Query: 493 SSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPISDVSASNSQSGDEDI 347
           SSIFCAIEVLPGFSFYGRTGSPRL V  TTV P +D S SNSQ GD  I
Sbjct: 484 SSIFCAIEVLPGFSFYGRTGSPRLSVVGTTVPPTADASTSNSQGGDMKI 532



 Score = 49.3 bits (116), Expect(2) = 3e-21
 Identities = 26/35 (74%), Positives = 27/35 (77%)
 Frame = -3

Query: 357 MKTLEINTLLP*AGGEDEGFVQDQTLLGVDFLGIS 253
           MK LEIN LLP AGGEDE  VQDQ  LG+ FLGIS
Sbjct: 530 MKILEINILLPWAGGEDEARVQDQAPLGLMFLGIS 564


>ref|NP_620620.2| polyprotien 2 [Cycas necrotic stunt virus]
            gi|124106315|sp|Q8QVU9.2|POL2_CNSV RecName: Full=RNA2
            polyprotein; AltName: Full=P2; Contains: RecName:
            Full=Protein 2A; Short=P2A; Contains: RecName:
            Full=Movement protein; AltName: Full=2B-MP; Contains:
            RecName: Full=Coat protein; AltName: Full=2C-CP
            gi|84369993|dbj|BAB89370.2| polyprotien 2 [Cycas necrotic
            stunt virus]
          Length = 1240

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 48/57 (84%), Positives = 49/57 (85%)
 Frame = -2

Query: 493  SSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPISDVSASNSQSGDEDIGDQYSAAL 323
            SSIFCAIEVLPGFSFYGRTGSPRL V  TTV P +D S SNSQ GDEDIGDQYSAAL
Sbjct: 1167 SSIFCAIEVLPGFSFYGRTGSPRLSVVGTTVPPTADASTSNSQGGDEDIGDQYSAAL 1223


>dbj|BAE93234.1| coat protein [Cycas necrotic stunt virus]
          Length = 569

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 48/57 (84%), Positives = 51/57 (89%)
 Frame = -2

Query: 493 SSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPISDVSASNSQSGDEDIGDQYSAAL 323
           SSIFCAIEVLPGFSFYGRTGSPRL VA TTV P++D S SNSQSGDEDIGDQ +AAL
Sbjct: 496 SSIFCAIEVLPGFSFYGRTGSPRLSVAGTTVPPVADASTSNSQSGDEDIGDQCAAAL 552


>gb|AEN25476.2| polyprotein 2 [Cycas necrotic stunt virus]
          Length = 1289

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 46/57 (80%), Positives = 48/57 (84%)
 Frame = -2

Query: 493  SSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPISDVSASNSQSGDEDIGDQYSAAL 323
            SSIFCAIEVLPGFSFYGRTGSPRL VA TTV PI D S S+ Q GDED GDQY+AAL
Sbjct: 1216 SSIFCAIEVLPGFSFYGRTGSPRLSVAGTTVPPIVDASTSSLQGGDEDTGDQYAAAL 1272