BLASTX nr result
ID: Mentha24_contig00042222
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Mentha24_contig00042222 (494 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_733975.1| capsid protein [Cycas necrotic stunt virus] 78 3e-21 ref|NP_620620.2| polyprotien 2 [Cycas necrotic stunt virus] gi|1... 99 6e-19 dbj|BAE93234.1| coat protein [Cycas necrotic stunt virus] 99 6e-19 gb|AEN25476.2| polyprotein 2 [Cycas necrotic stunt virus] 94 2e-17 >ref|NP_733975.1| capsid protein [Cycas necrotic stunt virus] Length = 564 Score = 78.2 bits (191), Expect(2) = 3e-21 Identities = 38/49 (77%), Positives = 39/49 (79%) Frame = -2 Query: 493 SSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPISDVSASNSQSGDEDI 347 SSIFCAIEVLPGFSFYGRTGSPRL V TTV P +D S SNSQ GD I Sbjct: 484 SSIFCAIEVLPGFSFYGRTGSPRLSVVGTTVPPTADASTSNSQGGDMKI 532 Score = 49.3 bits (116), Expect(2) = 3e-21 Identities = 26/35 (74%), Positives = 27/35 (77%) Frame = -3 Query: 357 MKTLEINTLLP*AGGEDEGFVQDQTLLGVDFLGIS 253 MK LEIN LLP AGGEDE VQDQ LG+ FLGIS Sbjct: 530 MKILEINILLPWAGGEDEARVQDQAPLGLMFLGIS 564 >ref|NP_620620.2| polyprotien 2 [Cycas necrotic stunt virus] gi|124106315|sp|Q8QVU9.2|POL2_CNSV RecName: Full=RNA2 polyprotein; AltName: Full=P2; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Movement protein; AltName: Full=2B-MP; Contains: RecName: Full=Coat protein; AltName: Full=2C-CP gi|84369993|dbj|BAB89370.2| polyprotien 2 [Cycas necrotic stunt virus] Length = 1240 Score = 99.0 bits (245), Expect = 6e-19 Identities = 48/57 (84%), Positives = 49/57 (85%) Frame = -2 Query: 493 SSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPISDVSASNSQSGDEDIGDQYSAAL 323 SSIFCAIEVLPGFSFYGRTGSPRL V TTV P +D S SNSQ GDEDIGDQYSAAL Sbjct: 1167 SSIFCAIEVLPGFSFYGRTGSPRLSVVGTTVPPTADASTSNSQGGDEDIGDQYSAAL 1223 >dbj|BAE93234.1| coat protein [Cycas necrotic stunt virus] Length = 569 Score = 99.0 bits (245), Expect = 6e-19 Identities = 48/57 (84%), Positives = 51/57 (89%) Frame = -2 Query: 493 SSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPISDVSASNSQSGDEDIGDQYSAAL 323 SSIFCAIEVLPGFSFYGRTGSPRL VA TTV P++D S SNSQSGDEDIGDQ +AAL Sbjct: 496 SSIFCAIEVLPGFSFYGRTGSPRLSVAGTTVPPVADASTSNSQSGDEDIGDQCAAAL 552 >gb|AEN25476.2| polyprotein 2 [Cycas necrotic stunt virus] Length = 1289 Score = 94.0 bits (232), Expect = 2e-17 Identities = 46/57 (80%), Positives = 48/57 (84%) Frame = -2 Query: 493 SSIFCAIEVLPGFSFYGRTGSPRLCVASTTVSPISDVSASNSQSGDEDIGDQYSAAL 323 SSIFCAIEVLPGFSFYGRTGSPRL VA TTV PI D S S+ Q GDED GDQY+AAL Sbjct: 1216 SSIFCAIEVLPGFSFYGRTGSPRLSVAGTTVPPIVDASTSSLQGGDEDTGDQYAAAL 1272