BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00041160
         (376 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP68381.1| putative polyprotein [Oryza sativa Japonica Group...    57   3e-06
ref|NP_001057345.1| Os06g0266100 [Oryza sativa Japonica Group] g...    56   6e-06

>gb|AAP68381.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108710435|gb|ABF98230.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1118

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 29/84 (34%), Positives = 45/84 (53%)
 Frame = -2

Query: 312  SLQDLPATDAEGEFAVESISVLAHRNIRHRGSTVEQVFVNWIAAAPDLATWEDLKFIKKK 133
            +++ LP  ++E    V+   ++A R  +   + VEQV V W+  +   ATWEDL  +K+K
Sbjct: 1015 AVRPLPLVESEELIPVQ---IIARRLYKRGAAAVEQVKVRWMGQSSSDATWEDLAVLKQK 1071

Query: 132  FPSLYPWGQGSASPGGIVMNKGTP 61
            FP++  WGQ     GG V     P
Sbjct: 1072 FPTVPAWGQAGCPEGGHVTADDNP 1095


>ref|NP_001057345.1| Os06g0266100 [Oryza sativa Japonica Group]
           gi|113595385|dbj|BAF19259.1| Os06g0266100, partial
           [Oryza sativa Japonica Group]
          Length = 399

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
 Frame = -2

Query: 321 FEGSLQD-LPATDAEGEFAVESISVLAHRNIRHRGSTVEQVFVNWIAAAPDLATWEDLKF 145
           F+G+L   LP++D   ++    I +L +R I+   +TV QV + W   A + ATWEDL+ 
Sbjct: 271 FQGALHSTLPSSDDAFQYP---IMLLDNRLIKKGNTTVSQVLIQWSDTAVEDATWEDLED 327

Query: 144 IKKKFPSLYPWGQGSASPGGIVMNKG 67
           ++ +FP    WGQ +    GIV   G
Sbjct: 328 LRARFPEALAWGQATFQGEGIVKASG 353