BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00037427
         (374 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...    62   1e-07
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...    57   3e-06
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...    57   3e-06
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    57   3e-06

>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 56/147 (38%), Positives = 76/147 (51%), Gaps = 23/147 (15%)
 Frame = +1

Query: 1   SKGPPKHRRNSSFHVTRSFLGFGQDSVFPEKSNFRRQLQLH-SRSTDGFPAVGFQMNGD- 174
           S   P+    SS + T SFLGFGQDSVF + + FR  + +  S    GF  +G  + GD 
Sbjct: 44  SSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDE 103

Query: 175 -IDGP-AANQVDSSGLCC-MSCAGVAEAVSV------EDSS--DGVQQL-----KEKMKK 306
            +  P   NQV+S+  CC  S A VAEAV+V      ED S  D VQ+L     KE+ K+
Sbjct: 104 FLSRPLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQ 163

Query: 307 WGHQRNAEM-----RNEKYYNTLKKRQ 372
           +  +R  +         + Y TLK+RQ
Sbjct: 164 FAFRRRKQRMLTSGMGHRKYQTLKRRQ 190


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
 Frame = +1

Query: 1   SKGPPKHRRNSSFHVTRSFLGFGQDSVFPEKSNFRRQLQLH-SRSTDGFPAVGFQMNGD- 174
           S   P+    SS + T SFLGFGQDS+F + + FR  + +  S    GF  +G  + GD 
Sbjct: 44  SSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDE 103

Query: 175 -IDGP-AANQVDSSGLCCMSCAGVAEAVSV------EDSS--DGVQQL-----KEKMKKW 309
            +  P   NQV+++  C  S A VAEAV+V      ED S  D V +L     KE+ K++
Sbjct: 104 FLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQF 163

Query: 310 GHQRNAEM-----RNEKYYNTLKKRQ 372
             +R  +         + Y TLK+RQ
Sbjct: 164 AFRRRKQRMLTSGMGHRKYQTLKRRQ 189


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
 Frame = +1

Query: 1   SKGPPKHRRNSSFHVTRSFLGFGQDSVFPEKSNFRRQLQLH-SRSTDGFPAVGFQMNGD- 174
           S   P+    SS + T SFLGFGQDS+F + + FR  + +  S    GF  +G  + GD 
Sbjct: 44  SSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDE 103

Query: 175 -IDGP-AANQVDSSGLCCMSCAGVAEAVSV------EDSS--DGVQQL-----KEKMKKW 309
            +  P   NQV+++  C  S A VAEAV+V      ED S  D V +L     KE+ K++
Sbjct: 104 FLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQF 163

Query: 310 GHQRNAEM-----RNEKYYNTLKKRQ 372
             +R  +         + Y TLK+RQ
Sbjct: 164 AFRRRKQRMLTSGMGHRKYQTLKRRQ 189


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
 Frame = +1

Query: 52  SFLGFGQDSVFPEKSNFRRQLQLHSRSTDGFPAVGFQMNGDID-----------GPAANQ 198
           SFLGF QD +FPE   F    +  S S+ GF  +GF+  G+I            G   NQ
Sbjct: 69  SFLGFSQDLIFPEIMKFGT-FEPSSCSSSGFSEMGFRRIGEISSREDAVGRPSFGCLRNQ 127

Query: 199 VDSSGLCCMSCAGVAEAVSVED------SSDGVQQLKEKMKKWGHQRNAEMRNEK 345
           +  SG C  S A VAEAVS  D      +SD +Q+L  +MKK   ++    R EK
Sbjct: 128 MGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVNFKRREK 182