BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00030919
         (952 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus...   339   1e-90
gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlise...   312   1e-82
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   296   6e-78
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...   291   3e-76
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              280   5e-73
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   280   5e-73
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...   277   4e-72
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   273   6e-71
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   273   7e-71
ref|XP_002299208.2| DNA-directed RNA polymerase alpha subunit fa...   271   3e-70
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   270   8e-70
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   270   8e-70
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   269   1e-69
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   269   1e-69
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put...   268   3e-69
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...   268   3e-69
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   268   3e-69
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   265   3e-68
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   265   3e-68
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...   259   8e-67

>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
          Length = 2113

 Score =  339 bits (869), Expect = 1e-90
 Identities = 174/221 (78%), Positives = 186/221 (84%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PV  F++ SSA+G LIDSKSESALSKVVQQIGFLGIQ+SDKGKFY+ETLV+DMSSLFQ K
Sbjct: 670  PVTNFVK-SSAVGRLIDSKSESALSKVVQQIGFLGIQLSDKGKFYTETLVQDMSSLFQKK 728

Query: 772  YPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAIL 593
            YPS D  P EEF LV RPLFRGLNPYQEMVH            RGLTEPGTLFKNLMAIL
Sbjct: 729  YPSCDGYPAEEFSLVSRPLFRGLNPYQEMVHSIASREVIVRSTRGLTEPGTLFKNLMAIL 788

Query: 592  RDVVICYDGTVRNMCSNSIVQFEYGVSTANIASEFCAGDPVGVLAATAMSNPAYKAVLDX 413
            RDVVIC+DGTVRNMCSNSI+QFEYGV+TANIASEFCAGDPVGVLAATAMSNPAYKAVLD 
Sbjct: 789  RDVVICHDGTVRNMCSNSIIQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDS 848

Query: 412  XXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
                  SW+MMKEILL GV FKND  DRRV+LYL+ CDCGR
Sbjct: 849  SSSSNSSWEMMKEILLCGVSFKNDITDRRVILYLSHCDCGR 889



 Score =  107 bits (267), Expect = 7e-21
 Identities = 59/103 (57%), Positives = 73/103 (70%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQLVHESY 169
            R+IL    C C            + +AAL VKN LK+VSLK+ A+EFLIEYRSQ VHES+
Sbjct: 877  RVILYLSHCDC-------GRKHCQESAALVVKNQLKKVSLKDTAMEFLIEYRSQSVHESH 929

Query: 168  DGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNK 40
            + + G LVGHIHLNKTQL+QSNIS+ DVLEKC++TII   + K
Sbjct: 930  ETSHG-LVGHIHLNKTQLVQSNISMDDVLEKCRETIILQHKKK 971


>gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlisea aurea]
          Length = 1379

 Score =  312 bits (800), Expect = 1e-82
 Identities = 156/221 (70%), Positives = 176/221 (79%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PV +FI +SSAIG L DS+SES LSKVVQQIGF G Q+S KGKFY+E LVKD+SSLF+ K
Sbjct: 669  PVTEFIVNSSAIGFLTDSRSESGLSKVVQQIGFCGTQLSSKGKFYTERLVKDLSSLFRSK 728

Query: 772  YPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAIL 593
            YPS DD P E+FGLV +PLFRGLNPYQEMVH            RGLTEPGTLFKNLMAIL
Sbjct: 729  YPSSDDCPTEDFGLVCQPLFRGLNPYQEMVHSISSREVIVRSSRGLTEPGTLFKNLMAIL 788

Query: 592  RDVVICYDGTVRNMCSNSIVQFEYGVSTANIASEFCAGDPVGVLAATAMSNPAYKAVLDX 413
            RDVVICYDGTVRNMCSNSI+QFEY  ++ +I +EFCAGDPVGVLAAT+MSNPAYKAVLD 
Sbjct: 789  RDVVICYDGTVRNMCSNSIIQFEYSANSTDIVTEFCAGDPVGVLAATSMSNPAYKAVLDS 848

Query: 412  XXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
                  +W MMK+ILL    FKND +DRRV+LYL  C+CGR
Sbjct: 849  SSSSNSAWQMMKDILLCATSFKNDISDRRVILYLTDCECGR 889



 Score = 74.7 bits (182), Expect = 5e-11
 Identities = 42/103 (40%), Positives = 61/103 (59%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQLVHESY 169
            R+IL    C C            + T AL V+NHLK+V+LK+ A++FLIEY  QL     
Sbjct: 877  RVILYLTDCEC-------GRKHCQETGALVVQNHLKKVTLKDTAVDFLIEYFHQLCQSLE 929

Query: 168  DGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNK 40
            +G  G LVGHIHL++ +L++SN++   + E C +TI   E+ K
Sbjct: 930  EGYPG-LVGHIHLSEMELIRSNVNKDRIFEGCLETINLYEKKK 971


>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1 [Solanum lycopersicum]
          Length = 1632

 Score =  296 bits (759), Expect = 6e-78
 Identities = 155/222 (69%), Positives = 173/222 (77%), Gaps = 1/222 (0%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PV  F+  SS +G LIDSKSESA +KVVQQIGFLG+QISD+GKFY++TLV DM+ LFQ K
Sbjct: 671  PVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYTKTLVHDMAQLFQKK 730

Query: 772  YPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAIL 593
            YPS   +P EEFGLV   LF GL+PYQ M+H            RGLTEPGTLFKNLMAIL
Sbjct: 731  YPSVGTNPSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFKNLMAIL 790

Query: 592  RDVVICYDGTVRNMCSNSIVQFEYGVS-TANIASEFCAGDPVGVLAATAMSNPAYKAVLD 416
            RDVVICYDGTVRN+ SNSI+QFEYG S  +N+ SEFCAGDPVGVLAATAMSNPAYKAVLD
Sbjct: 791  RDVVICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAVLD 850

Query: 415  XXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
                   SW+MMKEILL GV FKND +DRRV+LYLN C C R
Sbjct: 851  SSPSSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRR 892



 Score = 66.2 bits (160), Expect = 2e-08
 Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRS-QLVHES 172
            R+IL    C C            +  AA  VKNHL +V LK+AA EFLIEY   Q  +E+
Sbjct: 880  RVILYLNDCGC-------RRGYCREKAAYVVKNHLSKVCLKDAADEFLIEYAGRQAGYEN 932

Query: 171  YDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNK 40
             +  +G L+GHI LN+ QL    IS+ +V E+CQ+ I   ++ K
Sbjct: 933  SETGTG-LIGHIRLNQGQLENLGISVLEVHERCQENISSFQKKK 975


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score =  291 bits (744), Expect = 3e-76
 Identities = 153/222 (68%), Positives = 169/222 (76%), Gaps = 1/222 (0%)
 Frame = -1

Query: 952 PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
           PV  F+  SS +G LIDSKSESA +KVVQQIGFLG+QISD+GKFY  TLV DM+ LFQ K
Sbjct: 222 PVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYXXTLVHDMAQLFQKK 281

Query: 772 YPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAIL 593
           YPS   +P EEFGLV   LF GL+PYQ M+H            RGLTEPGTLF NLMAIL
Sbjct: 282 YPSVGTNPSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFXNLMAIL 341

Query: 592 RDVVICYDGTVRNMCSNSIVQFEYGVS-TANIASEFCAGDPVGVLAATAMSNPAYKAVLD 416
           RDVVICYDGTVRN+ SNSI+QFEYG S  +N+ SEFCAGDPVGVLAATAMSNPAYKA LD
Sbjct: 342 RDVVICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAXLD 401

Query: 415 XXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
                  SW+MMKEILL GV FKND +DRRV+LYLN C C R
Sbjct: 402 SSPSSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRR 443



 Score = 65.5 bits (158), Expect(2) = 4e-09
 Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = -2

Query: 348 RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRS-QLVHES 172
           R+IL    C C            +  AA  VKNHL +V LK+AA EFLIEY   Q  +E+
Sbjct: 431 RVILYLNDCGC-------RRGYCREKAAYVVKNHLSKVCLKDAADEFLIEYAGRQAGYEN 483

Query: 171 YDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTI 61
            +  +G L+GHI LN+ QL    IS+ +V E+CQ+ I
Sbjct: 484 SETGTG-LIGHIRLNQGQLENLGISVLEVHERCQENI 519



 Score = 22.7 bits (47), Expect(2) = 4e-09
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 71  KTLSSESKETKVENLFKRIDLS 6
           + +SS   + K+ NLFKRI LS
Sbjct: 517 ENISSFRXKKKIGNLFKRIVLS 538


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  280 bits (717), Expect = 5e-73
 Identities = 148/223 (66%), Positives = 170/223 (76%), Gaps = 2/223 (0%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PVA FI +SSA+G+LIDSKS+SA++KVVQQIGFLG Q+S+KGKFYS TLV+ M+ LF+ K
Sbjct: 730  PVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYLFKSK 789

Query: 772  YPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAI 596
            YP +  D P  EFGL+    F GL+PY+EMVH            RGL+EPGTLFKNLMAI
Sbjct: 790  YPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAI 849

Query: 595  LRDVVICYDGTVRNMCSNSIVQFEYGVSTANIASEFC-AGDPVGVLAATAMSNPAYKAVL 419
            LRDVVICYDGTVRN+CSNSI+QFEYGV        F  AG+PVGVLAATAMSNPAYKAVL
Sbjct: 850  LRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVL 909

Query: 418  DXXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
            D       SW++MKEILL  V FKND  DRRV+LYLN CDCGR
Sbjct: 910  DSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGR 952



 Score = 72.8 bits (177), Expect = 2e-10
 Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQ-LVHES 172
            R+IL    C C            +  AA  VKN LK+ SLK+ A+EF+IEY  Q  V  S
Sbjct: 940  RVILYLNDCDC-------GRKYCRENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGS 992

Query: 171  YDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNKS*KP 28
             +  +GL VGHIHLNK  L   N+S+ +V +KC++TI    + K+  P
Sbjct: 993  SEPGTGL-VGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKNVGP 1039


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  280 bits (717), Expect = 5e-73
 Identities = 148/223 (66%), Positives = 170/223 (76%), Gaps = 2/223 (0%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PVA FI +SSA+G+LIDSKS+SA++KVVQQIGFLG Q+S+KGKFYS TLV+ M+ LF+ K
Sbjct: 670  PVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYLFKSK 729

Query: 772  YPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAI 596
            YP +  D P  EFGL+    F GL+PY+EMVH            RGL+EPGTLFKNLMAI
Sbjct: 730  YPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAI 789

Query: 595  LRDVVICYDGTVRNMCSNSIVQFEYGVSTANIASEFC-AGDPVGVLAATAMSNPAYKAVL 419
            LRDVVICYDGTVRN+CSNSI+QFEYGV        F  AG+PVGVLAATAMSNPAYKAVL
Sbjct: 790  LRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVL 849

Query: 418  DXXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
            D       SW++MKEILL  V FKND  DRRV+LYLN CDCGR
Sbjct: 850  DSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGR 892



 Score = 72.8 bits (177), Expect = 2e-10
 Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQ-LVHES 172
            R+IL    C C            +  AA  VKN LK+ SLK+ A+EF+IEY  Q  V  S
Sbjct: 880  RVILYLNDCDC-------GRKYCRENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGS 932

Query: 171  YDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNKS*KP 28
             +  +GL VGHIHLNK  L   N+S+ +V +KC++TI    + K+  P
Sbjct: 933  SEPGTGL-VGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKNVGP 979


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  277 bits (709), Expect = 4e-72
 Identities = 146/225 (64%), Positives = 172/225 (76%), Gaps = 4/225 (1%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PV+ FI +SSA+G LIDSKS+SA++K+VQQIGFLG+Q+SDKG+FYS+TLV+D++SL   K
Sbjct: 673  PVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTLVEDVASLCHSK 732

Query: 772  YPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAIL 593
            YPS  D P  E+GLV    F GL+PY+ +VH            RGL+EPGTLFKNLMAIL
Sbjct: 733  YPSDIDYPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEPGTLFKNLMAIL 792

Query: 592  RDVVICYDGTVRNMCSNSIVQFEYGVSTANIASE----FCAGDPVGVLAATAMSNPAYKA 425
            RDVVICYDGTVRN+CSNSI+QFEYGV   NI S     F AG+PVGVLAATAMSNPAYKA
Sbjct: 793  RDVVICYDGTVRNVCSNSIIQFEYGV---NIGSRPQHLFPAGEPVGVLAATAMSNPAYKA 849

Query: 424  VLDXXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
            VLD       SW++MKEILL  V FKN+  DRRV+LYLN C CGR
Sbjct: 850  VLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGR 894



 Score = 79.7 bits (195), Expect = 2e-12
 Identities = 45/103 (43%), Positives = 58/103 (56%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQLVHESY 169
            R+IL    C C            +  AA  VKN LK+VSLK+ A+EF+IEY +QL     
Sbjct: 882  RVILYLNNCGC-------GRKYCRERAACLVKNQLKKVSLKDTAVEFMIEYNNQLSGLGS 934

Query: 168  DGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNK 40
              N   LVGHIHLN+  L + NI + D+L+KCQ+TI    R K
Sbjct: 935  LINDAGLVGHIHLNEDMLRELNIGVHDILQKCQETINSFRRKK 977


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  273 bits (699), Expect = 6e-71
 Identities = 139/221 (62%), Positives = 162/221 (73%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PV  FI  SSA+G +IDS+S+SA+ K+VQQIGFLG+Q+SD+ KFYS  LV+D++SLF  K
Sbjct: 471  PVGNFILISSALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFYSRGLVEDVASLFHQK 530

Query: 772  YPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAIL 593
            YP  D  P EEFG V R  F GL+PY+E+VH            +GL EPGTLFKNLMA+L
Sbjct: 531  YPFADVYPSEEFGFVSRCFFHGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFKNLMAVL 590

Query: 592  RDVVICYDGTVRNMCSNSIVQFEYGVSTANIASEFCAGDPVGVLAATAMSNPAYKAVLDX 413
            RDVVICYDGTVRN+ SNS++QFEYGV      + F AGDPVGVLAATAMSNPAYKAVLD 
Sbjct: 591  RDVVICYDGTVRNISSNSVIQFEYGVGGMQSQNLFPAGDPVGVLAATAMSNPAYKAVLDS 650

Query: 412  XXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
                  SWDMMKEIL     F+ND  DRRV+LYLN C CGR
Sbjct: 651  SPNSNSSWDMMKEILFCRANFRNDINDRRVILYLNDCCCGR 691



 Score = 72.0 bits (175), Expect = 3e-10
 Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
 Frame = -2

Query: 348 RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEY-RSQLVHES 172
           R+IL    C C            +  A+  VKNHLK+VSL++AAIE  IEY R +L  ES
Sbjct: 679 RVILYLNDCCC-------GRKYCQENASCLVKNHLKKVSLRDAAIELAIEYKRPKLEPES 731

Query: 171 YDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNK 40
            + ++G LVGHIHLN   L  S I + D+L+KC++ +  + + K
Sbjct: 732 CEIDAG-LVGHIHLNSGLLKASGIGMHDILQKCEEQVNLLRKKK 774


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  273 bits (698), Expect = 7e-71
 Identities = 144/223 (64%), Positives = 170/223 (76%), Gaps = 2/223 (0%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PV +FI  SSA+G+LIDSKS++A++KVVQQIGFLG+Q+SD+GK YS+TLV+D++S F  K
Sbjct: 676  PVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLVEDLASHFLSK 735

Query: 772  YPS-YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAI 596
            YP+   D P  ++GL+    F GL+ Y+EM H            RGL+EPGTLFKNLMAI
Sbjct: 736  YPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMAI 795

Query: 595  LRDVVICYDGTVRNMCSNSIVQFEYGVSTANIA-SEFCAGDPVGVLAATAMSNPAYKAVL 419
            LRDVVICYDGTVRN+ SNSI+QFEYGV     + S F AG+PVGVLAATAMSNPAYKAVL
Sbjct: 796  LRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLAATAMSNPAYKAVL 855

Query: 418  DXXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
            D       SWDMMKEILL  VGFKND ADRRV+LYLN C CGR
Sbjct: 856  DSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGR 898



 Score = 79.3 bits (194), Expect = 2e-12
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = -2

Query: 369  YSTELASRMILL-TGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYR 193
            +  +LA R ++L    C C         +  +  AA  VKNHL++VSLK+ A  F+IEY+
Sbjct: 878  FKNDLADRRVILYLNDCGC-------GRNYCQERAAYLVKNHLEKVSLKDIAKCFMIEYK 930

Query: 192  SQLVHESYDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTI 61
            SQ + ES+  ++G LVGH+HL+K +L   NI+   +LEKCQ+T+
Sbjct: 931  SQQIPESFGSDAG-LVGHVHLDKRKLQDLNITAQVILEKCQETV 973


>ref|XP_002299208.2| DNA-directed RNA polymerase alpha subunit family protein [Populus
            trichocarpa] gi|550346661|gb|EEE84013.2| DNA-directed RNA
            polymerase alpha subunit family protein [Populus
            trichocarpa]
          Length = 842

 Score =  271 bits (693), Expect = 3e-70
 Identities = 143/223 (64%), Positives = 169/223 (75%), Gaps = 2/223 (0%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PV +FI  SSA+G+LIDSKS+ A++K+VQQIGFLG+Q+SD+GK YS+TLV+D++S FQ K
Sbjct: 590  PVLEFILTSSALGYLIDSKSDGAVAKLVQQIGFLGLQVSDRGKLYSKTLVEDLASHFQSK 649

Query: 772  YPS-YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAI 596
            YP+   + P  ++GL+    F GL+ Y+EM H            RGL+EPGTLFKNLMAI
Sbjct: 650  YPTNLLNYPSAQYGLIQSSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMAI 709

Query: 595  LRDVVICYDGTVRNMCSNSIVQFEYGVST-ANIASEFCAGDPVGVLAATAMSNPAYKAVL 419
            LRDVVICYDGTVRN+CSNSI+Q EYGV   A   S F AG+PVGVLAATAMSNPAYKAVL
Sbjct: 710  LRDVVICYDGTVRNVCSNSIIQSEYGVKVGAESQSLFPAGEPVGVLAATAMSNPAYKAVL 769

Query: 418  DXXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
            D       SWDMMKEILL  VGFKND ADRRV+LY N C CGR
Sbjct: 770  DSTPSSNSSWDMMKEILLCKVGFKNDQADRRVILYFNYCGCGR 812


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  270 bits (689), Expect = 8e-70
 Identities = 138/220 (62%), Positives = 166/220 (75%)
 Frame = -1

Query: 949  VAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKY 770
            VAKFI  SS +G+LIDSKS+SA+SKVVQQ GFLG+Q+SD+GKFYS+TLV+D++S F+  Y
Sbjct: 672  VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 731

Query: 769  PSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILR 590
            P   + P  ++GL+    F GL+PY+EM H            RGL+EPGTLFKNLMA+LR
Sbjct: 732  PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 791

Query: 589  DVVICYDGTVRNMCSNSIVQFEYGVSTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXX 410
            DVVICYDGTVRN+CSNSI+QF+Y V+     S F AG+PVGVLAATAMSNPAYKAVLD  
Sbjct: 792  DVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSS 851

Query: 409  XXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
                 SW++MKEILL  V F ND  DRRV+LYLN C CGR
Sbjct: 852  PSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGR 891



 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 44/96 (45%), Positives = 55/96 (57%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQLVHESY 169
            R+IL    C C            +  AA  VKN LKRVSLK+AA+EFLIEY+   +    
Sbjct: 879  RVILYLNDCGC-------GRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDD 931

Query: 168  DGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTI 61
            +G    LVGHIHLNK  L    IS+ D+L KCQ+T+
Sbjct: 932  EG----LVGHIHLNKILLEDLRISMHDILPKCQETL 963


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  270 bits (689), Expect = 8e-70
 Identities = 138/220 (62%), Positives = 166/220 (75%)
 Frame = -1

Query: 949  VAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKY 770
            VAKFI  SS +G+LIDSKS+SA+SKVVQQ GFLG+Q+SD+GKFYS+TLV+D++S F+  Y
Sbjct: 673  VAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIY 732

Query: 769  PSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILR 590
            P   + P  ++GL+    F GL+PY+EM H            RGL+EPGTLFKNLMA+LR
Sbjct: 733  PMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLR 792

Query: 589  DVVICYDGTVRNMCSNSIVQFEYGVSTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXX 410
            DVVICYDGTVRN+CSNSI+QF+Y V+     S F AG+PVGVLAATAMSNPAYKAVLD  
Sbjct: 793  DVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSS 852

Query: 409  XXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
                 SW++MKEILL  V F ND  DRRV+LYLN C CGR
Sbjct: 853  PSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGR 892



 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 44/96 (45%), Positives = 55/96 (57%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQLVHESY 169
            R+IL    C C            +  AA  VKN LKRVSLK+AA+EFLIEY+   +    
Sbjct: 880  RVILYLNDCGC-------GRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDD 932

Query: 168  DGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTI 61
            +G    LVGHIHLNK  L    IS+ D+L KCQ+T+
Sbjct: 933  EG----LVGHIHLNKILLEDLRISMHDILPKCQETL 964


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  269 bits (688), Expect = 1e-69
 Identities = 140/221 (63%), Positives = 167/221 (75%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PV  FI  SS++G+LID KS+SA++KVVQQIGFLG+QISD+GKFYS+TLV+D+S L+  K
Sbjct: 674  PVTNFILKSSSMGNLIDPKSDSAINKVVQQIGFLGLQISDRGKFYSKTLVEDVSCLYTRK 733

Query: 772  YPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAIL 593
            YP   D P  E GL+    F GL+PY+E+VH            RGLTEPGTLFKNLMAIL
Sbjct: 734  YPENVDYPSAEHGLIRSCFFHGLDPYEEIVHSISTREVIVRSSRGLTEPGTLFKNLMAIL 793

Query: 592  RDVVICYDGTVRNMCSNSIVQFEYGVSTANIASEFCAGDPVGVLAATAMSNPAYKAVLDX 413
            RDVVICYDGTVRN+CSNSI+QFEYG  +A   + + AG+PVGVLAATAMSNPAYKAVLD 
Sbjct: 794  RDVVICYDGTVRNVCSNSIIQFEYGRGSAR--NLYPAGEPVGVLAATAMSNPAYKAVLDS 851

Query: 412  XXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
                  SW++MKEILL    F+N+  DRRV+LYLN C CGR
Sbjct: 852  SPSSNSSWELMKEILLCKAIFRNELIDRRVILYLNHCGCGR 892



 Score = 75.9 bits (185), Expect = 2e-11
 Identities = 40/103 (38%), Positives = 62/103 (60%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQLVHESY 169
            R+IL    C C            +  A   V+N LK+VSLK+ A+EF+IEY++Q    + 
Sbjct: 880  RVILYLNHCGC-------GRKYCREQATYLVQNQLKKVSLKDTAVEFMIEYKNQSSFSAV 932

Query: 168  DGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNK 40
            D N+G LVGHIHLN+  L + +I ++++L+KC++ I  V + K
Sbjct: 933  DMNAG-LVGHIHLNEVLLKEMDIGMNEILQKCEEAINSVRKKK 974


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  269 bits (687), Expect = 1e-69
 Identities = 144/223 (64%), Positives = 169/223 (75%), Gaps = 2/223 (0%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PV+ FI +SSA+G LIDSKS+SA++KVVQQ+GFLG Q+ D+GK YS+TLV+D+SSL+Q K
Sbjct: 669  PVSNFILNSSALGDLIDSKSDSAMNKVVQQVGFLGRQLYDQGKLYSKTLVEDVSSLYQNK 728

Query: 772  YPS-YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAI 596
            YPS   D P  EFGLV R    GL+P + M+H            RGL+EPGTLFKNLMA 
Sbjct: 729  YPSDIVDYPSAEFGLVHRGFVHGLDPVEGMIHSIATREVIVRSSRGLSEPGTLFKNLMAT 788

Query: 595  LRDVVICYDGTVRNMCSNSIVQFEYGV-STANIASEFCAGDPVGVLAATAMSNPAYKAVL 419
            LRDVVICYDGTVRN+CSNSI+QFEYGV S +   + F AG+PVGVLAATAMSNPAYKAVL
Sbjct: 789  LRDVVICYDGTVRNVCSNSIIQFEYGVKSGSGPENLFPAGEPVGVLAATAMSNPAYKAVL 848

Query: 418  DXXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
            D       SWD+MKEILL  V FKN+  DRRV+LYLN C CGR
Sbjct: 849  DSTPSSNSSWDLMKEILLCKVNFKNELIDRRVVLYLNDCGCGR 891



 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 41/103 (39%), Positives = 62/103 (60%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQLVHESY 169
            R++L    C C            +  AA  VKN LK+VSLK+ A+EF+IEY+ +    S 
Sbjct: 879  RVVLYLNDCGC-------GRKYCREHAAYLVKNRLKKVSLKDTAVEFMIEYQKERAAGSM 931

Query: 168  DGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNK 40
            + +SG LVGH+HLN+  L + N+ +S++L+KC++TI    R K
Sbjct: 932  EIDSG-LVGHVHLNEMLLRELNLGMSEILQKCEETINSFRRKK 973


>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao] gi|508727914|gb|EOY19811.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            3 [Theobroma cacao]
          Length = 1675

 Score =  268 bits (684), Expect = 3e-69
 Identities = 142/222 (63%), Positives = 168/222 (75%), Gaps = 1/222 (0%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PVA FI +SSA+G LIDSKS+S ++KVVQQIGFLG+Q+S+KGKFYS+TLV+D++  FQ  
Sbjct: 671  PVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAYQFQSI 730

Query: 772  YPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAI 596
            YPS   D P  EFGL+    F GL+PY+ MVH            RGL+EPGTLFKNLMAI
Sbjct: 731  YPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFKNLMAI 790

Query: 595  LRDVVICYDGTVRNMCSNSIVQFEYGVSTANIASEFCAGDPVGVLAATAMSNPAYKAVLD 416
            LRDVVICYDGTVRN+ SNSI+QF+YG++ A    +F AG+PVGVLAATAMSNPAYKAVLD
Sbjct: 791  LRDVVICYDGTVRNISSNSIIQFQYGLN-ARTKPQFPAGEPVGVLAATAMSNPAYKAVLD 849

Query: 415  XXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
                   SW++MKEILL  V  KND  DRRV+LYL  CDCGR
Sbjct: 850  STPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGR 891



 Score = 69.7 bits (169), Expect = 2e-09
 Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQ-LVHES 172
            R+IL    C C            +  AA  VKNHL++V LK+ A+E + EY+ Q  V ES
Sbjct: 879  RVILYLKDCDC-------GRKYCQENAAYLVKNHLRKVKLKDTAVELIFEYKQQQTVSES 931

Query: 171  YDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNK 40
              G    LVGHI LNK  L + NIS+ +V  KCQ+TII   + K
Sbjct: 932  EAG----LVGHILLNKAVLKELNISMQEVHMKCQETIISFRKKK 971


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  268 bits (684), Expect = 3e-69
 Identities = 142/222 (63%), Positives = 168/222 (75%), Gaps = 1/222 (0%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PVA FI +SSA+G LIDSKS+S ++KVVQQIGFLG+Q+S+KGKFYS+TLV+D++  FQ  
Sbjct: 671  PVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAYQFQSI 730

Query: 772  YPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAI 596
            YPS   D P  EFGL+    F GL+PY+ MVH            RGL+EPGTLFKNLMAI
Sbjct: 731  YPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFKNLMAI 790

Query: 595  LRDVVICYDGTVRNMCSNSIVQFEYGVSTANIASEFCAGDPVGVLAATAMSNPAYKAVLD 416
            LRDVVICYDGTVRN+ SNSI+QF+YG++ A    +F AG+PVGVLAATAMSNPAYKAVLD
Sbjct: 791  LRDVVICYDGTVRNISSNSIIQFQYGLN-ARTKPQFPAGEPVGVLAATAMSNPAYKAVLD 849

Query: 415  XXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
                   SW++MKEILL  V  KND  DRRV+LYL  CDCGR
Sbjct: 850  STPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGR 891



 Score = 69.7 bits (169), Expect = 2e-09
 Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQ-LVHES 172
            R+IL    C C            +  AA  VKNHL++V LK+ A+E + EY+ Q  V ES
Sbjct: 879  RVILYLKDCDC-------GRKYCQENAAYLVKNHLRKVKLKDTAVELIFEYKQQQTVSES 931

Query: 171  YDGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNK 40
              G    LVGHI LNK  L + NIS+ +V  KCQ+TII   + K
Sbjct: 932  EAG----LVGHILLNKAVLKELNISMQEVHMKCQETIISFRKKK 971


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 991

 Score =  268 bits (684), Expect = 3e-69
 Identities = 141/222 (63%), Positives = 165/222 (74%), Gaps = 1/222 (0%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PVA FI   S+IG LID KS+SA++KVVQQIGFLG+QISD+GKFY++TLV+DM+  F+ K
Sbjct: 673  PVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYTKTLVEDMALHFESK 732

Query: 772  YPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAIL 593
            YPS  D P  + GL+    F GL+PY+EMVH            RGL+EPGTLFKNLMAIL
Sbjct: 733  YPSDIDYPSAKHGLIQSCFFHGLDPYEEMVHSISAREVMVRSTRGLSEPGTLFKNLMAIL 792

Query: 592  RDVVICYDGTVRNMCSNSIVQFEYGVSTA-NIASEFCAGDPVGVLAATAMSNPAYKAVLD 416
            RDVVICYDGTVRN+CSNSI+QFEYG+       S F AG+PVGVLAATAMSNPAYKAVLD
Sbjct: 793  RDVVICYDGTVRNVCSNSIIQFEYGMKAGIKAQSLFPAGEPVGVLAATAMSNPAYKAVLD 852

Query: 415  XXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
                   SW++MKEIL   V FKND  DRRV+LY N C CG+
Sbjct: 853  STPSSNSSWELMKEILQCRVNFKNDITDRRVILYFNYCGCGK 894



 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 36/96 (37%), Positives = 55/96 (57%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQLVHESY 169
            R+IL    C C        +   +   A +VKNHL++V LK+ A+ F+ EY+SQ      
Sbjct: 882  RVILYFNYCGC-------GKFYCQERLAYSVKNHLEKVILKDIALCFMCEYKSQPTI--- 931

Query: 168  DGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTI 61
              ++GL VGH+HL KT+L + N+S+  +  KC +TI
Sbjct: 932  -ADAGL-VGHVHLKKTKLQELNVSMEVIHRKCSETI 965


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  265 bits (676), Expect = 3e-68
 Identities = 141/224 (62%), Positives = 164/224 (73%), Gaps = 3/224 (1%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            P   FI   S++G L DSKSESA++KVVQQIGFLG+Q+SDKG+FYS++L++D++SLF  +
Sbjct: 670  PFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNR 729

Query: 772  YPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAI 596
            Y S   D P  EFGLV    F GL+PY+EMVH            RGLTEPGTLFKNLMAI
Sbjct: 730  YSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAI 789

Query: 595  LRDVVICYDGTVRNMCSNSIVQFEYGVSTANIA--SEFCAGDPVGVLAATAMSNPAYKAV 422
            LRDVVICYDGTVRN+CSNSI+Q EYG+    +   S F  G+PVGVLAATAMS PAYKAV
Sbjct: 790  LRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAV 849

Query: 421  LDXXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
            LD       SWDMMKEILL  V FKN+  DRRV+LYLN C CGR
Sbjct: 850  LDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGR 893



 Score = 71.2 bits (173), Expect = 6e-10
 Identities = 39/103 (37%), Positives = 59/103 (57%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQLVHESY 169
            R+IL    C C               AA  VK+HLK+V+LK+AA++F+IEY  Q    + 
Sbjct: 881  RVILYLNNCAC-------GRKYCNENAAYVVKSHLKKVTLKDAAMDFMIEYNRQ---PTP 930

Query: 168  DGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNK 40
             G    LVGH+HLN+  L + NI +++VL +CQ+T+   ++ K
Sbjct: 931  SGLGPGLVGHVHLNRMLLKELNIDMTEVLRRCQETMSSFKKKK 973


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  265 bits (676), Expect = 3e-68
 Identities = 141/224 (62%), Positives = 164/224 (73%), Gaps = 3/224 (1%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            P   FI   S++G L DSKSESA++KVVQQIGFLG+Q+SDKG+FYS++L++D++SLF  +
Sbjct: 700  PFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNR 759

Query: 772  YPSYD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAI 596
            Y S   D P  EFGLV    F GL+PY+EMVH            RGLTEPGTLFKNLMAI
Sbjct: 760  YSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAI 819

Query: 595  LRDVVICYDGTVRNMCSNSIVQFEYGVSTANIA--SEFCAGDPVGVLAATAMSNPAYKAV 422
            LRDVVICYDGTVRN+CSNSI+Q EYG+    +   S F  G+PVGVLAATAMS PAYKAV
Sbjct: 820  LRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAV 879

Query: 421  LDXXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
            LD       SWDMMKEILL  V FKN+  DRRV+LYLN C CGR
Sbjct: 880  LDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGR 923



 Score = 68.2 bits (165), Expect = 5e-09
 Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQLVHESY 169
            R+IL    C C               AA  VK+HLK+V+LK+AA++F+IEY  Q    + 
Sbjct: 911  RVILYLNNCAC-------GRKYCNENAAYVVKSHLKKVTLKDAAMDFMIEYNRQ---PTP 960

Query: 168  DGNSGLLVGHIHLNKTQLM--QSNISLSDVLEKCQDTII*VERNK 40
             G    LVGH+HLN+ +++  + NI +++VL +CQ+T+   ++ K
Sbjct: 961  SGLGPGLVGHVHLNRVRMLLKELNIDMTEVLRRCQETMSSFKKKK 1005


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score =  259 bits (663), Expect = 8e-67
 Identities = 136/223 (60%), Positives = 165/223 (73%), Gaps = 2/223 (0%)
 Frame = -1

Query: 952  PVAKFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK 773
            PV  F   S+ +G LIDSKS+SA+ KV+QQIGFLG Q+ ++GKFYS+ LV+D++S FQ+K
Sbjct: 756  PVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKFYSKGLVEDVASHFQLK 815

Query: 772  -YPSYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAI 596
             +   DD P  EFGL+    F GL+PY+E+VH            RGL+EPGTLFKNLMAI
Sbjct: 816  CFYDKDDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMAI 875

Query: 595  LRDVVICYDGTVRNMCSNSIVQFEYGVSTANIASE-FCAGDPVGVLAATAMSNPAYKAVL 419
            LRDVVICYDGTVRN+CSNSI+QFEYG+ + + A   F AG+PVGVLAAT+MSNPAYKAVL
Sbjct: 876  LRDVVICYDGTVRNVCSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLAATSMSNPAYKAVL 935

Query: 418  DXXXXXXXSWDMMKEILLYGVGFKNDTADRRVLLYLNGCDCGR 290
            D       SW  MKEILL  V F+N+  DRRV+LYLN CDCGR
Sbjct: 936  DASPSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGR 978



 Score = 61.2 bits (147), Expect = 6e-07
 Identities = 35/107 (32%), Positives = 59/107 (55%)
 Frame = -2

Query: 348  RMILLTGGCFCI*MVVIVAESIAKNTAALAVKNHLKRVSLKEAAIEFLIEYRSQLVHESY 169
            R+IL    C C         +  +  AA  V+N L++VSLK+AA++F++EY+ Q      
Sbjct: 966  RVILYLNDCDC-------GRNYCRENAAYLVQNQLRKVSLKDAALDFIVEYQQQRRRRDG 1018

Query: 168  DGNSGLLVGHIHLNKTQLMQSNISLSDVLEKCQDTII*VERNKS*KP 28
              ++G LV HI L + +L +  I++++V +KCQ+ +    R K   P
Sbjct: 1019 TEDAG-LVCHIRLKEVKLEELKINMTEVYQKCQEKLNSFSRKKKLSP 1064