BLASTX nr result
ID: Mentha24_contig00026684
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Mentha24_contig00026684 (1364 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus... 576 e-162 ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 470 e-130 ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit... 463 e-128 ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 456 e-126 ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 454 e-125 ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prun... 453 e-125 ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prun... 446 e-123 gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis] 444 e-122 ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [... 439 e-120 ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr... 436 e-120 ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu... 435 e-119 ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps... 427 e-117 ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [... 426 e-117 ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr... 421 e-115 ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian... 415 e-113 ref|XP_002883182.1| pseudouridine synthase family protein [Arabi... 415 e-113 ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 411 e-112 ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 407 e-111 ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit... 402 e-109 ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mit... 399 e-108 >gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus guttatus] Length = 457 Score = 576 bits (1484), Expect = e-162 Identities = 299/432 (69%), Positives = 346/432 (80%), Gaps = 7/432 (1%) Frame = -2 Query: 1309 YFAAAATNSENSDKEKNI-QWLILPPFTPTADGCSIGKKLYGRPEETSTTTALKWILKCC 1133 Y+A AAT +EN +KEKN QWL LPPF P ADGCSIGK+L G+P + TT ALKWILKCC Sbjct: 28 YYATAAT-AENCEKEKNYDQWLTLPPFNPNADGCSIGKRLSGQPADAKTT-ALKWILKCC 85 Query: 1132 PHLPRSLVQKLFRLRQV-----RKECSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDER 968 PH+PR LVQKLFRLRQV RKE S+ E EQRP+R+GAKDLM IGDRI+LPKSVD Sbjct: 86 PHIPRCLVQKLFRLRQVHFLLIRKESSNMEDKEQRPKRIGAKDLMDIGDRIFLPKSVDGT 145 Query: 967 SHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYL 788 S TTA++++F E++ +FV+SLELYKD AIIVINKPPG+PVQGG+GI+RSLDELAAKYL Sbjct: 146 SPSTTAESRNFFDEKEMEFVRSLELYKDPAIIVINKPPGLPVQGGIGIKRSLDELAAKYL 205 Query: 787 RYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGKNILQKRY 608 ++D E PRLVHRLDRDSSGILVMGRTQLSTT+LHSVFREKT GA N+V G K ILQK+Y Sbjct: 206 KFDFTESPRLVHRLDRDSSGILVMGRTQLSTTILHSVFREKTFGASNNVCGNKKILQKKY 265 Query: 607 LALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGY 428 ALVIGSPRRR+G ISVPL+KVV D+GKSERITVA+ +NTL QHAVT+YRVIASS GY Sbjct: 266 WALVIGSPRRREGLISVPLVKVVLDNGKSERITVAENNNTLSAQHAVTEYRVIASSSRGY 325 Query: 427 TWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKA 248 +WLELSPLTGRKHQLRVHCAEVL TPIVGDYKYG QAH+KL +L+S SD K GD SK Sbjct: 326 SWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKLGHHLDSVSDPKWGDEISKV 385 Query: 247 DKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPL 71 D+QF LHLHCKEM LPDI+ L++ ++ +DLD+A + SI L A L Sbjct: 386 KNDTFALELESGSISDKQFRLHLHCKEMSLPDITQALKYASINSDLDTAEMKSITLEACL 445 Query: 70 PPHMQRSWDLLN 35 P HMQRSW LL+ Sbjct: 446 PAHMQRSWSLLS 457 >ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera] gi|296090438|emb|CBI40257.3| unnamed protein product [Vitis vinifera] Length = 476 Score = 470 bits (1209), Expect = e-130 Identities = 253/442 (57%), Positives = 308/442 (69%), Gaps = 17/442 (3%) Frame = -2 Query: 1306 FAAAATNSENSDKEKNIQWLILPPFTPTADGCSIGKKLYGRPEETST--------TTALK 1151 FA + + K K +W LP FTP D S+GK L G + +T TTALK Sbjct: 38 FATSNDAVSEAHKSKKGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALK 97 Query: 1150 WILKCCPHLPRSLVQKLFRLRQVRKECSSTETN-------EQRPRRVGAKDLMGIGDRIY 992 W+++CCP LPRSLVQKLFRLRQVR+E + T+ E R +RV AKDLM +GD+I Sbjct: 98 WVVRCCPQLPRSLVQKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQIL 157 Query: 991 LPKSVDERSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSL 812 LP +V+E + ++ ++E+ FV +LELYKD AIIV+NKPPG+PVQGG+GI+RSL Sbjct: 158 LPITVEEFP---SEKHEYHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSL 214 Query: 811 DELAAKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLG 635 DELAA YLRYD EPPRLVHRLDRDSSGIL+MGRTQ S T+LHS+FREKT GA N D+ Sbjct: 215 DELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDT 274 Query: 634 GKNILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYR 455 K ILQ+RY ALVIGSPRR +G IS PL KVV DDGKSERIT+ D T+ QHA+T+YR Sbjct: 275 KKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYR 334 Query: 454 VIASSPSGYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDL 275 VI SS GYTWLELSPLTGRKHQLRVHCAEVL TPIVGDYKYG QAHRK +Q +S + Sbjct: 335 VIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEK 394 Query: 274 KLGDMPSKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARI 98 L + S D+Q LHLHCK+M+LP++S+ LQ+ + A+ D + + Sbjct: 395 NLDENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSEL 454 Query: 97 GSIMLNAPLPPHMQRSWDLLNS 32 S+ APLP HMQRSWD+LNS Sbjct: 455 ESLEFVAPLPSHMQRSWDILNS 476 >ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum tuberosum] Length = 467 Score = 463 bits (1192), Expect = e-128 Identities = 248/435 (57%), Positives = 307/435 (70%), Gaps = 9/435 (2%) Frame = -2 Query: 1309 YFAAAATNSE--NSDKEKNIQWLILPPFTPTADGCSIGKKLYG-----RPEETSTTTALK 1151 ++A T ++ N ++ + +WL LPPFT T +G ++G++L G + T+T TALK Sbjct: 37 HYATTVTAAQVCNRNENEKAKWLTLPPFTATVNGAALGRELAGVKMDVKENSTNTMTALK 96 Query: 1150 WILKCCPHLPRSLVQKLFRLRQVRKECSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDE 971 W+ +CCP LP+SLVQKLFRLRQVR++ S+ E EQRP+RV AK+ M +GDRI+LP +V + Sbjct: 97 WVQRCCPELPKSLVQKLFRLRQVRRDSSNVE--EQRPKRVSAKESMNVGDRIFLPITVQK 154 Query: 970 RSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKY 791 P+ SSEE+RKFV SLELYKD I+V+NKPPGMPVQGG+GI+RSLDELAAKY Sbjct: 155 --FPSEKVVYYPSSEEERKFVHSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLDELAAKY 212 Query: 790 LRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQK 614 +R+++ E PRLVHRLDRD SG+LVMGRTQLS + LHS+FREKT + N D+ K ILQK Sbjct: 213 MRHEYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQK 272 Query: 613 RYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPS 434 +Y ALVIG PRR G IS PL K+V D+GKSERIT+ Q+AVT+YR+I SS Sbjct: 273 KYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEK 332 Query: 433 GYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPS 254 GYTWLELSPLTGRKHQLRVHCAE L TPIVGDYKYG QAHRKL+ S L LG Sbjct: 333 GYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLNLGVQIP 392 Query: 253 KADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGN-VADLDSARIGSIMLNA 77 + D+Q LHLHCKEM+LP+IS+ LQ V+D D + SI L A Sbjct: 393 RQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQVVSDTDLVDVESIKLVA 452 Query: 76 PLPPHMQRSWDLLNS 32 PLP HMQ+SWD L+S Sbjct: 453 PLPFHMQKSWDCLSS 467 >ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria vesca subsp. vesca] Length = 476 Score = 456 bits (1174), Expect = e-126 Identities = 239/433 (55%), Positives = 306/433 (70%), Gaps = 11/433 (2%) Frame = -2 Query: 1297 AATNSENSDKEKN-IQWLILPPFTPTADGCSIGKKL--------YGRPEETSTTTALKWI 1145 + T + + DK+K +W LPPFT T +G ++G++L Y +P + TTALKW+ Sbjct: 36 STTQTVHEDKQKRGNKWFTLPPFTDTVNGAALGRELSRSVGRDVYAKPSAAAATTALKWV 95 Query: 1144 LKCCPHLPRSLVQKLFRLRQVRKECSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDERS 965 +CCP +PR+LVQKLFRLRQVR+E S + + Q +RVG KD M +GDRI LP SV E Sbjct: 96 TRCCPEIPRNLVQKLFRLRQVRREASDMDQSVQPLKRVGTKDSMNLGDRICLPISVKE-- 153 Query: 964 HPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLR 785 P + SEE+ +F++SL LYKD AIIVINKPPG+PVQGG+GI+RSLDELAA L Sbjct: 154 FPDHKQKEGHCSEEEAEFIRSLVLYKDPAIIVINKPPGLPVQGGIGIKRSLDELAATCLS 213 Query: 784 YDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNILQKRY 608 YD +PPRLVHRLDRD SGILVMGRTQ S TVLHSVFREKT GA +DV+ K+ILQ+RY Sbjct: 214 YDLSQPPRLVHRLDRDCSGILVMGRTQTSATVLHSVFREKTFGASDDVIKHAKSILQRRY 273 Query: 607 LALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGY 428 LALVIGSPR+++G ISVPL KVV D+GKS+RIT+ +K+ LP QHA+T Y+VI SS G+ Sbjct: 274 LALVIGSPRQQEGLISVPLGKVVVDNGKSDRITILNKAQCLPSQHAITKYKVIGSSCPGF 333 Query: 427 TWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKA 248 TWLEL PLTGRKHQLRVHCAEVL TPIVGDYKYG + H+ + S ++ + SK Sbjct: 334 TWLELIPLTGRKHQLRVHCAEVLGTPIVGDYKYGWRTHKDWKPVAWSKTECHSNEERSKR 393 Query: 247 DKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPL 71 ++ LHLH K+M+LP++S+ LQ+ + A+ D + + SI L AP+ Sbjct: 394 KNLPFDLNMDSGSIDEKNLRLHLHSKQMVLPNVSLALQNVKLHAECDLSGLESIELVAPM 453 Query: 70 PPHMQRSWDLLNS 32 P +MQ+SWD+ NS Sbjct: 454 PSYMQKSWDITNS 466 >ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum lycopersicum] Length = 467 Score = 454 bits (1168), Expect = e-125 Identities = 245/435 (56%), Positives = 304/435 (69%), Gaps = 9/435 (2%) Frame = -2 Query: 1309 YFAAAATNSE--NSDKEKNIQWLILPPFTPTADGCSIGKKLYG-----RPEETSTTTALK 1151 ++A T+++ N ++ + +WL LPPFT +G ++G++L G T+T TALK Sbjct: 37 HYATTVTDAQVCNRNENEKAKWLTLPPFTAAVNGAALGRELAGVKMDVNENSTNTMTALK 96 Query: 1150 WILKCCPHLPRSLVQKLFRLRQVRKECSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDE 971 W+ +CCP LP+SLVQKLFRLRQVR++ S+ E EQRP+RV AK+ M +GDRI+LP +V + Sbjct: 97 WVQRCCPELPKSLVQKLFRLRQVRRDSSNVE--EQRPKRVSAKESMNVGDRIFLPITVQK 154 Query: 970 RSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKY 791 P+ SSEE+RKFV SLELYKD+ IIV+NKPPGMPVQGG+GI+RSLDELAAKY Sbjct: 155 --FPSEKVVYYPSSEEERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKY 212 Query: 790 LRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQK 614 + + + E PRLVHRLDRD SG+LVMGRTQLS + LHS+FREKT + N D+ K ILQK Sbjct: 213 MSHQYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQK 272 Query: 613 RYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPS 434 +Y ALVIG PRR G IS PL K+V D+GKSERIT+ Q+AVT+YR+I SS Sbjct: 273 KYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVREPSAQYAVTEYRIIGSSEK 332 Query: 433 GYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPS 254 GYTWLELSPLTGRKHQLRVHCAE L TPIVGDYKYG QAHRKL+ S L L Sbjct: 333 GYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLNLVVEIP 392 Query: 253 KADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGN-VADLDSARIGSIMLNA 77 + D+Q LHLHCKEM+LP+IS+ LQ V+D D + SI L A Sbjct: 393 RQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQVVSDADLVDVESIKLVA 452 Query: 76 PLPPHMQRSWDLLNS 32 PLP HMQ+SWD L++ Sbjct: 453 PLPFHMQKSWDCLSA 467 >ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica] gi|462395210|gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica] Length = 483 Score = 453 bits (1166), Expect = e-125 Identities = 251/450 (55%), Positives = 307/450 (68%), Gaps = 28/450 (6%) Frame = -2 Query: 1297 AATNSENSDKEKNIQ-WLILPPFTPTADGCSIGKKL-----YGRPEET---------STT 1163 A T + + D+EK + W LPPFT T +G ++GK+L YGR T +TT Sbjct: 34 ATTETFHEDREKRGEKWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTT 93 Query: 1162 TALKWILKCCPHLPRSLVQKLFRLRQVRKE-----CSS--TETNEQRPRRVGAKDLMGIG 1004 TALKW+ +CCP LPRSLVQKLFRLRQVR+E CS E E+ +RV AKD M +G Sbjct: 94 TALKWVTRCCPELPRSLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVG 153 Query: 1003 DRIYLPKSVDE----RSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQG 836 DRI+LP SV E + + + SEE+ F++SLELYKD AIIVINKPPGMPVQG Sbjct: 154 DRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQG 213 Query: 835 GVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIG 656 G+GI+RSLDELAA L YD EPPRLVHRLDRDSSGILVMGRTQ S TVLHS+FREKT G Sbjct: 214 GIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFG 273 Query: 655 AFNDVLG-GKNILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPG 479 A ND + K ILQ+RY ALVIGSPR+R+G IS PL KVV D+GKS+RIT+ + S TLP Sbjct: 274 ASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPS 333 Query: 478 QHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQ 299 QHA+T Y+VI S GYTWLEL+PLTGRKHQLRVHCAEVLRTPIVGDYKYG Q HR + Sbjct: 334 QHAITKYKVIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKP 393 Query: 298 YLESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV- 122 S ++ + K ++ LHLHCK+M+LP++++ LQ+ + Sbjct: 394 LAWSNNECHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQNVKLH 453 Query: 121 ADLDSARIGSIMLNAPLPPHMQRSWDLLNS 32 +D D + + S+ L A LP MQRSW++ NS Sbjct: 454 SDSDLSELESLELVAALPSFMQRSWNITNS 483 >ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica] gi|462395209|gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica] Length = 481 Score = 446 bits (1148), Expect = e-123 Identities = 250/450 (55%), Positives = 306/450 (68%), Gaps = 28/450 (6%) Frame = -2 Query: 1297 AATNSENSDKEKNIQ-WLILPPFTPTADGCSIGKKL-----YGRPEET---------STT 1163 A T + + D+EK + W LPPFT T +G ++GK+L YGR T +TT Sbjct: 34 ATTETFHEDREKRGEKWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTT 93 Query: 1162 TALKWILKCCPHLPRSLVQKLFRLRQVRKE-----CSS--TETNEQRPRRVGAKDLMGIG 1004 TALKW+ +CCP LPRSLVQKLFRLRQVR+E CS E E+ +RV AKD M +G Sbjct: 94 TALKWVTRCCPELPRSLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVG 153 Query: 1003 DRIYLPKSVDE----RSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQG 836 DRI+LP SV E + + + SEE+ F++SLELYKD AIIVINKPPGMPVQG Sbjct: 154 DRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQG 213 Query: 835 GVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIG 656 G+GI+RSLDELAA L YD EPPRLVHRLDRDSSGILVMGRTQ S TVLHS+FREKT G Sbjct: 214 GIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFG 273 Query: 655 AFNDVL-GGKNILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPG 479 A ND + K ILQ+RY ALVIGSPR+R+G IS PL KVV D+GKS+RIT+ + S TLP Sbjct: 274 ASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPS 333 Query: 478 QHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQ 299 QHA+T Y+VI S YTWLEL+PLTGRKHQLRVHCAEVLRTPIVGDYKYG Q HR + Sbjct: 334 QHAITKYKVIGS--PCYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKP 391 Query: 298 YLESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV- 122 S ++ + K ++ LHLHCK+M+LP++++ LQ+ + Sbjct: 392 LAWSNNECHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQNVKLH 451 Query: 121 ADLDSARIGSIMLNAPLPPHMQRSWDLLNS 32 +D D + + S+ L A LP MQRSW++ NS Sbjct: 452 SDSDLSELESLELVAALPSFMQRSWNITNS 481 >gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis] Length = 470 Score = 444 bits (1142), Expect = e-122 Identities = 237/433 (54%), Positives = 295/433 (68%), Gaps = 18/433 (4%) Frame = -2 Query: 1276 SDKEKNIQWLILPPFTPTADGCSIGKKLYGRPEE---------TSTTTALKWILKCCPHL 1124 S ++ +W LPP T T DG +GK + G ++ ++ TTALKW+++CCP L Sbjct: 41 SSEKNGTKWFTLPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPEL 100 Query: 1123 PRSLVQKLFRLRQVRKECSSTET-------NEQRPRRVGAKDLMGIGDRIYLPKSVDERS 965 PRSLVQKLFRLRQVR+E + E + R RRV AKD + +GD+I+LP SV E Sbjct: 101 PRSLVQKLFRLRQVRRESFNVEDCNAGDQLGKPRLRRVSAKDSLNLGDKIFLPISVKELP 160 Query: 964 HPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLR 785 + F +EE+ KF++SLELYKD AI+V+NKPPG+PVQGG+GI+ SLD+LA L Sbjct: 161 ---VEKKECFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCLS 217 Query: 784 YDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFND-VLGGKNILQKRY 608 YD+ EPPRLVHRLDRD SGILVMGRTQ S TVLHS+FREKT GA ND + GK +LQ+RY Sbjct: 218 YDYTEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRY 277 Query: 607 LALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGY 428 A VIGSPR G IS PL KVV D+GKS+RITV + S+TL QHA+T Y+VI SS GY Sbjct: 278 WAFVIGSPRHPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHGY 337 Query: 427 TWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKA 248 TWLELSPLTGRKHQLRVHCAEVL TP+VGDYKYG QAHR + D K ++ K Sbjct: 338 TWLELSPLTGRKHQLRVHCAEVLGTPMVGDYKYGWQAHRDWKPLHWPDPDNKCIEVLPKR 397 Query: 247 DKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQH-GNVADLDSARIGSIMLNAPL 71 ++ LHLHCK+M+LP+IS VLQ+ +D + +R+ + L+APL Sbjct: 398 KNLPFGLNMDNGSISEKHPRLHLHCKQMVLPNISHVLQNVQRYSDYELSRLERLKLDAPL 457 Query: 70 PPHMQRSWDLLNS 32 P +MQRSW L NS Sbjct: 458 PSYMQRSWHLTNS 470 >ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao] gi|508706469|gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao] Length = 477 Score = 439 bits (1129), Expect = e-120 Identities = 237/427 (55%), Positives = 296/427 (69%), Gaps = 11/427 (2%) Frame = -2 Query: 1279 NSDKEKNIQWLILPPFTPTADGCSIGKKLYGRPEETST--TTALKWILKCCPHLPRSLVQ 1106 NS+K+K +W LPPFT T + +G KL G+P + TTA+KW+++CCP LPRSLVQ Sbjct: 54 NSEKKKKNKWFTLPPFTKTVNASVLGAKLSGKPHSKAANETTAVKWVMRCCPELPRSLVQ 113 Query: 1105 KLFRLRQVRKECSSTET-------NEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTAD 947 KLFRLRQVR+E E + +RVGAKD + IGDRI+LP SV E Sbjct: 114 KLFRLRQVRRESHVLEVAGDGCQVQTVQLKRVGAKDALNIGDRIFLPFSVREFREEK--- 170 Query: 946 NQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEP 767 +S +EE+ F++ LELYKD AIIV+NKPPGMPVQGG+GI+ SLD+LAA L +D+ EP Sbjct: 171 QESGCTEEELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDKLAAACLCFDYSEP 230 Query: 766 PRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAF-NDVLGGKNILQKRYLALVIG 590 PRLVHRLDRDSSGILVMGRTQ+S T+LHSVFRE+T A +DV K ILQKRY ALVIG Sbjct: 231 PRLVHRLDRDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRILQKRYWALVIG 290 Query: 589 SPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELS 410 SPRR +G I PL KVV DDGKS+RITV D S + Q A T+Y+VI ++ GYTWLELS Sbjct: 291 SPRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKTTSHGYTWLELS 350 Query: 409 PLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXX 230 PLTGRKHQLRVHCAEVL TPIVGDYKYG QAHR+ + ES D + + Sbjct: 351 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRRWQHLPESDLKKSSNDKCPEENMLPFG 410 Query: 229 XXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNVA-DLDSARIGSIMLNAPLPPHMQR 53 ++ LHLHC+EMI P++S LQ+ ++ D D +++ S+ + APLP +MQ+ Sbjct: 411 LNMDSGSISAKRPRLHLHCREMIFPNVSQALQNLQLSTDHDLSKLKSLEVVAPLPSYMQK 470 Query: 52 SWDLLNS 32 SWD++NS Sbjct: 471 SWDIMNS 477 >ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina] gi|557524859|gb|ESR36165.1| hypothetical protein CICLE_v10028283mg [Citrus clementina] Length = 494 Score = 436 bits (1122), Expect = e-120 Identities = 239/430 (55%), Positives = 296/430 (68%), Gaps = 11/430 (2%) Frame = -2 Query: 1288 NSENSDKEKNIQWLILPPFTPTADGCSIGKKLYGRPEET--STTTALKWILKCCPHLPRS 1115 ++ N D E+ +W LPPFT T DG ++G++L P ++ S TTALKW+L+CCP LPR+ Sbjct: 69 DNNNGDDERRGKWFTLPPFTSTIDGSALGRQL-ACPSKSPISETTALKWVLQCCPGLPRN 127 Query: 1114 LVQKLFRLRQVRKECSSTETN-------EQRPRRVGAKDLMGIGDRIYLPKSVDERSHPT 956 VQKLFRL QVR+E S +++ E + +RV AKD + +GDRI+LP S+ E Sbjct: 128 FVQKLFRLSQVRRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQESP--- 184 Query: 955 TADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDH 776 + + +EE+ F+QSLELYKDSAIIVINKP GMPVQGG+GIRRS+DELAA L YD+ Sbjct: 185 SRKEKCPCTEEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDY 244 Query: 775 MEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQKRYLAL 599 EPPRLVHRLDRDSSGILVMGRTQ S TVLHS+FREKT A D K ILQ+ Y AL Sbjct: 245 SEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWAL 304 Query: 598 VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 419 V+G+PR +G IS PL KVV D+GKS+RITV + + QHAVT Y+VI S GYTWL Sbjct: 305 VVGTPRCSKGVISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWL 364 Query: 418 ELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKX 239 +LSPLTGRKHQLRVHCAEVL TPIVGDYKYG Q HRK +Q+ S + D K Sbjct: 365 KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTL 424 Query: 238 XXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNVAD-LDSARIGSIMLNAPLPPH 62 ++Q LHLHCKEM LP++S +Q ++ D +++ S+ L APLP H Sbjct: 425 HFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLESLKLVAPLPSH 484 Query: 61 MQRSWDLLNS 32 MQRSWD+LNS Sbjct: 485 MQRSWDVLNS 494 >ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa] gi|550331407|gb|EEE87831.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa] Length = 471 Score = 435 bits (1119), Expect = e-119 Identities = 242/432 (56%), Positives = 299/432 (69%), Gaps = 14/432 (3%) Frame = -2 Query: 1291 TNSENS-DKEKNIQWLILPPFTPTADGCSIGKKLYGR--PEETSTTTALKWILKCCPHLP 1121 T S+N + +K +W LPP+T T +G +G L R + S TTALKW+L+CCP LP Sbjct: 44 TKSQNHYENDKRGKWFTLPPYTSTINGSVLGIALSARIPAKSASETTALKWVLRCCPELP 103 Query: 1120 RSLVQKLFRLRQVRKECSSTET-------NEQRPRRVGAKDLMGIGDRIYLPKSVDERSH 962 R+LVQKLFRLRQVR+E E+ E R +RV AKD M +GDRI+LP SV Sbjct: 104 RNLVQKLFRLRQVRRESPVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKV--- 160 Query: 961 PTTADNQS-FSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLR 785 A+ Q +EE+ F++ LELYKD+AIIV+NKPPGMPVQGG+GI+RSLDEL+A Sbjct: 161 -LPAEKQDCHCNEEEINFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFS 219 Query: 784 YDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGK-NILQKRY 608 D+ EPPRLVHRLDRD SGILVMGRTQ S TVLH++FREKT+ A ND +G K ILQ++Y Sbjct: 220 SDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKY 279 Query: 607 LALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGY 428 ALVIGSPRR +G IS PL KVV D+GKS+RITV + S L QHAVT YRVI SS G+ Sbjct: 280 WALVIGSPRRPKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESS-HGF 338 Query: 427 TWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKA 248 TWLELSPLTGRKHQLRVHCAEVL TPIVGDYKY QAHR +Q S + D S + Sbjct: 339 TWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSND-KSLS 397 Query: 247 DKXXXXXXXXXXXXXDEQF-SLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAP 74 +K E+ LHLHCK+M+LPD+S LQ + +D D +++ S+ +AP Sbjct: 398 EKILPFALDLDSGSISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAP 457 Query: 73 LPPHMQRSWDLL 38 LPP+M++SWD+L Sbjct: 458 LPPYMKKSWDIL 469 >ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella] gi|482566291|gb|EOA30480.1| hypothetical protein CARUB_v10013603mg [Capsella rubella] Length = 476 Score = 427 bits (1098), Expect = e-117 Identities = 236/426 (55%), Positives = 293/426 (68%), Gaps = 15/426 (3%) Frame = -2 Query: 1255 QWLILPPFTPTADGCSIGKKLYGRPE------ETSTTTALKWILKCCPHLPRSLVQKLFR 1094 +WL LPPF+PT DG ++GK+L + ++STTTAL+WIL+C P LPR+LVQKLFR Sbjct: 54 KWLTLPPFSPTVDGTAVGKELASEGDSITGSTDSSTTTALRWILRCRPDLPRTLVQKLFR 113 Query: 1093 LRQVRKE----CSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTADNQSFS-S 929 LRQVR+E C E + +RV AK+ + +GDRIYLP SVD + P A +SF S Sbjct: 114 LRQVRREMSVSCDGDEVQRSQLKRVAAKESLNVGDRIYLPLSVDNDAPPPPAKKESFRCS 173 Query: 928 EEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHR 749 EE+RKFV SL LYKD +IIV+NKP GM VQGG GI+ S+DELAA L +D E PRLVHR Sbjct: 174 EEERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELAATCLTFDKSESPRLVHR 233 Query: 748 LDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNI--LQKRYLALVIGSPRR 578 LDRD SG+LV+ RTQ + TVLHS+FREKT GA G KNI L+++Y+ALVIG PRR Sbjct: 234 LDRDCSGLLVLARTQTAATVLHSIFREKTSGA--SAYGVKKNIKSLKRKYMALVIGCPRR 291 Query: 577 RQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTG 398 ++G IS PL KVV DDGKS+RITV D + QHA+T+YRVI SSP GYTWLEL PLTG Sbjct: 292 QRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTG 351 Query: 397 RKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXX 218 RKHQLRVHCAEVL TPIVGDYKYG QAH+ E + S + P+K Sbjct: 352 RKHQLRVHCAEVLGTPIVGDYKYGWQAHKSREPLVTSE------NTPTKPQSSPFGLDLD 405 Query: 217 XXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPLPPHMQRSWDL 41 +Q LHLH K++ LP+IS +L+ V +D D + I S+ +APLP HMQ S++L Sbjct: 406 GGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDIDSLKFDAPLPTHMQLSFNL 465 Query: 40 LNSNLQ 23 L S ++ Sbjct: 466 LKSKVE 471 >ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis] gi|223542055|gb|EEF43599.1| ribosomal pseudouridine synthase, putative [Ricinus communis] Length = 536 Score = 426 bits (1096), Expect = e-117 Identities = 236/425 (55%), Positives = 294/425 (69%), Gaps = 7/425 (1%) Frame = -2 Query: 1285 SENSDKEKNIQWLILPPFTPTADGCSIGKKLYGRP--EETSTTTALKWILKCCPHLPRSL 1112 S+N+ K ++ LPP+T T G ++GK L + ++ TTALKW+L+CCP LPR+L Sbjct: 118 SKNNTKNTG-KFFTLPPYTSTISGSALGKALSATATAKASTETTALKWVLRCCPELPRNL 176 Query: 1111 VQKLFRLRQVRKECSSTETNEQ--RPRRVGAKDLMGIGDRIYLPKSVDERSHPTTADNQS 938 VQKLFRLRQV++E + E + +RV AKDLM +GDRI+LP SV + Sbjct: 177 VQKLFRLRQVKRELLNVGDGEMEHKTKRVAAKDLMNVGDRIFLPISVQALPFEK---QKC 233 Query: 937 FSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRL 758 E++ F++ LELYKD AIIV+NKPPGMPVQGG+GI+ S DELAA L YD+ EPPRL Sbjct: 234 HCGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRL 293 Query: 757 VHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNILQKRYLALVIGSPR 581 VHRLDRDSSGILVMGRTQ ST VLHSVFREKT A N +G + ILQ++Y ALVIGSPR Sbjct: 294 VHRLDRDSSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPR 353 Query: 580 RRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLT 401 R++G IS PL KVV DDGKS+RITV + + + QHAVT YRV+ SS GY WLELSP+T Sbjct: 354 RQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVMESS-HGYAWLELSPIT 412 Query: 400 GRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXX 221 GRKHQLRVHCAEVL TPIVGDYKYG Q HRK +Q L + K+ + + K Sbjct: 413 GRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQ-LPFPNLEKISNENALCKKILPFGID 471 Query: 220 XXXXXXDEQF-SLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPLPPHMQRSW 47 E+ LHLHCK+M+LPD+S L+ ++ D + + SI L+APLP +MQRSW Sbjct: 472 LESGSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQRSW 531 Query: 46 DLLNS 32 D+LNS Sbjct: 532 DILNS 536 >ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum] gi|557107647|gb|ESQ47954.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum] Length = 477 Score = 421 bits (1081), Expect = e-115 Identities = 229/433 (52%), Positives = 292/433 (67%), Gaps = 12/433 (2%) Frame = -2 Query: 1285 SENSDKEKNIQWLILPPFTPTADGCSIGKKLYG-----RPEETSTTTALKWILKCCPHLP 1121 +++ D + +WL LPPF+PT D ++GK+L+ + +TTAL+WIL+C P LP Sbjct: 47 ADDDDDDPRGKWLTLPPFSPTIDAAAVGKELFSDGDSVKASSDGSTTALRWILRCRPDLP 106 Query: 1120 RSLVQKLFRLRQVRKE----CSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTT 953 R+LVQKLFRLRQVR+E C E + +RV AK+ + +GDRIYLP SV+ + P Sbjct: 107 RTLVQKLFRLRQVRREMSLSCDGDELQRSQLKRVAAKESLNLGDRIYLPLSVNNDAPPPA 166 Query: 952 ADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHM 773 SEE+RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA L + Sbjct: 167 KKESFCCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDELAATCLTFGKS 226 Query: 772 EPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGKNI--LQKRYLAL 599 E PRLVHRLDRD SG+LV+GRTQ + TVLHS+FREKT GA + KNI L+++YLAL Sbjct: 227 ESPRLVHRLDRDCSGLLVLGRTQTAATVLHSIFREKTSGA-SAYSVKKNIKSLKRKYLAL 285 Query: 598 VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 419 VIG PRR++G IS PL KVV DDGKS+RITV D + QHA+T+YRVI SSP GYTWL Sbjct: 286 VIGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWL 345 Query: 418 ELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKX 239 EL PLTGRKHQLRVHCAEVL TPI+GDYKYG QAH+ E ++ S G+ P+K Sbjct: 346 ELRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQAHKSREPFVSS------GNTPTKPSLS 399 Query: 238 XXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPLPPH 62 +Q LHLH K++ LP+IS +L+ V +D DS+ + +APLP H Sbjct: 400 PFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEQLEVSSDSDSSEHDCLKFDAPLPAH 459 Query: 61 MQRSWDLLNSNLQ 23 MQ S++LL S ++ Sbjct: 460 MQLSFNLLKSRVE 472 >ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana] gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA pseudouridine synthase 4, mitochondrial; AltName: Full=RNA pseudouridylate synthase 4; AltName: Full=RNA-uridine isomerase 4; Flags: Precursor gi|11994467|dbj|BAB02469.1| unnamed protein product [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1| hypothetical protein [Arabidopsis thaliana] gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine synthase 4 [Arabidopsis thaliana] Length = 477 Score = 415 bits (1067), Expect = e-113 Identities = 230/425 (54%), Positives = 290/425 (68%), Gaps = 14/425 (3%) Frame = -2 Query: 1255 QWLILPPFTPTADGCSIGKKLYGRPE------ETSTTTALKWILKCCPHLPRSLVQKLFR 1094 +WL LPPF+PT DG ++GK L + + S TTAL+WIL+C P LPR+LVQKLFR Sbjct: 54 KWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFR 113 Query: 1093 LRQVRKECSST----ETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTT-ADNQSFS- 932 LRQVR+E S + E + +RV AK+ + +GDRIYLP SVD + T A +SF Sbjct: 114 LRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQC 173 Query: 931 SEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVH 752 S+E+RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA L++D E PRLVH Sbjct: 174 SDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVH 233 Query: 751 RLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQKRYLALVIGSPRRR 575 RLDRD SG+LV+ RTQ + TVLHS+FREKT GA V L+++Y+ALVIG P R+ Sbjct: 234 RLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQ 293 Query: 574 QGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGR 395 +G IS PL KVV DDGKSERITV D + QHA+T+YRVI SSP GYTWLEL PLTGR Sbjct: 294 RGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGR 353 Query: 394 KHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXXX 215 KHQLRVHCAEVL TPIVGDYKYG QAH+ E ++ S ++ P+K Sbjct: 354 KHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENN------PTKQSSSPFGLDLDG 407 Query: 214 XXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPLPPHMQRSWDLL 38 +Q LHLH K++ LP+IS +L+ V +D D + + S+ +APLP HMQ S++LL Sbjct: 408 GDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLL 467 Query: 37 NSNLQ 23 S ++ Sbjct: 468 KSRVE 472 >ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297329022|gb|EFH59441.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 477 Score = 415 bits (1067), Expect = e-113 Identities = 234/439 (53%), Positives = 297/439 (67%), Gaps = 16/439 (3%) Frame = -2 Query: 1291 TNSENSDKEKNIQWLILPPFTPTADGCSIGKKLYGRPE------ETSTTTALKWILKCCP 1130 + ++ D N WL LPPF+PT DG ++GK L + + S TTAL+WIL+C P Sbjct: 44 STAQTDDSRGN--WLTLPPFSPTIDGTAVGKDLLSDGDSVKASTDNSKTTALRWILRCRP 101 Query: 1129 HLPRSLVQKLFRLRQVRKECSST----ETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSH 962 LPR+LVQKLFRLRQVR++ S + E + +RV AK+ + +GDRIYLP SVD + Sbjct: 102 DLPRTLVQKLFRLRQVRRQMSLSVDGHELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTP 161 Query: 961 PTT-ADNQSFS-SEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYL 788 PT A +SF SEE+RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA L Sbjct: 162 PTPPAKKESFQCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAATCL 221 Query: 787 RYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNI--LQ 617 +D E PRLVHRLDRD SG+LV+ RTQ + TVLHS+FREKT GA G KNI L+ Sbjct: 222 TFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTCGA--SAYGVKKNIKSLK 279 Query: 616 KRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSP 437 ++Y+ALVIG PRR++G IS PL KVV DDGKS+RITV D + QHA+T+Y+VI SSP Sbjct: 280 RKYMALVIGCPRRQKGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYKVIESSP 339 Query: 436 SGYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMP 257 GYTWLEL PLTGRKHQLRVHCAEVL TPI+GDYKYG QAH+ E ++ S + P Sbjct: 340 HGYTWLELRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQAHKAREPFVSSET------TP 393 Query: 256 SKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLN 80 +K +Q LHLH K++ LP+IS +L+ V +D D + + S+ + Sbjct: 394 TKPSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFD 453 Query: 79 APLPPHMQRSWDLLNSNLQ 23 APLP HMQ S++LL S ++ Sbjct: 454 APLPSHMQLSFNLLKSRVE 472 >ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis sativus] Length = 471 Score = 411 bits (1057), Expect = e-112 Identities = 226/451 (50%), Positives = 295/451 (65%), Gaps = 28/451 (6%) Frame = -2 Query: 1303 AAAATNSENSDKEKNIQWLILPPFTPTADGCSIGKKLY---GRPE---ETSTTTALKWIL 1142 A+ + + ++K N +W LPP+T T +G +G ++ G+ E T+ TALKW++ Sbjct: 44 ASEPVSQQKNEKGSN-RWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVI 102 Query: 1141 KCCPHLPRSLVQKLFRLRQVRKECSSTETNE------QRPRRVGAKDLMGIGDRIYLPKS 980 +CCP LPRSLVQKLFRLR+VR+ S E +E + +RV AKD++ +GD+I+LP S Sbjct: 103 RCCPELPRSLVQKLFRLRKVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPMS 162 Query: 979 VDERSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELA 800 V S T D + ++E+ F+ SL L+KD AI+VINKPPG+PVQGG+G++RSLDELA Sbjct: 163 VQVFSTEKTRD---YCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELA 219 Query: 799 AKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGA---FNDVLGGK 629 A L Y + EPPRLVHRLDRDSSGIL+MGRT ST++LHSVFREKT A N V K Sbjct: 220 ASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEK 279 Query: 628 NILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVI 449 IL KRY ALVIGSPRR +G I+ PL K+V DDG+SE+I V D + +P Q A+T Y+VI Sbjct: 280 KILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI 339 Query: 448 ASSPSGYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRK------------- 308 S GYTWLEL PLTGRKHQLRVHCAEVL TPIVGDYKYG QAH+ Sbjct: 340 -KSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFCSNFHKNQG 398 Query: 307 LEQYLESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHG 128 +Q+L D + G + + + LHLHCK++ LPD+S L H Sbjct: 399 KKQFLPFGLDFESGSIAENSPR------------------LHLHCKQLTLPDVSFAL-HN 439 Query: 127 NVADLDSARIGSIMLNAPLPPHMQRSWDLLN 35 + D D +R+ + L+APLP +MQ+SWD++N Sbjct: 440 DSLDRDCSRLECLELDAPLPSYMQKSWDIIN 470 >ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis sativus] Length = 466 Score = 407 bits (1046), Expect = e-111 Identities = 223/447 (49%), Positives = 293/447 (65%), Gaps = 23/447 (5%) Frame = -2 Query: 1303 AAAATNSENSDKEKNIQWLILPPFTPTADGCSIGKKLY---GRPE---ETSTTTALKWIL 1142 A+ + + ++K N +W LPP+T T +G +G ++ G+ E T+ TALKW++ Sbjct: 44 ASEPVSQQKNEKGSN-RWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVI 102 Query: 1141 KCCPHLPRSLVQKLFRLRQVRKECS-STETNEQRPRRVGAKDLMGIGDRIYLPKSVDERS 965 +CCP LPRSLVQKLFRLR+V ++ + + + +RV AKD++ +GD+I+LP SV S Sbjct: 103 RCCPELPRSLVQKLFRLRKVPRQLNVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQVFS 162 Query: 964 HPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLR 785 T D + ++E+ F+ SL L+KD AI+VINKPPG+PVQGG+G++RSLDELAA L Sbjct: 163 TEKTRD---YCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLS 219 Query: 784 YDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGA---FNDVLGGKNILQK 614 Y + EPPRLVHRLDRDSSGIL+MGRT ST++LHSVFREKT A N V K IL K Sbjct: 220 YGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLK 279 Query: 613 RYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPS 434 RY ALVIGSPRR +G I+ PL K+V DDG+SE+I V D + +P Q A+T Y+VI S Sbjct: 280 RYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHH 338 Query: 433 GYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRK-------------LEQYL 293 GYTWLEL PLTGRKHQLRVHCAEVL TPIVGDYKYG QAH+ +Q+L Sbjct: 339 GYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFCSNFHKNQGKKQFL 398 Query: 292 ESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNVADL 113 D + G + + LHLHCK++ LPD+S L H + D Sbjct: 399 PFGLDFESGSIAENNPR------------------LHLHCKQLTLPDVSFAL-HNDSLDR 439 Query: 112 DSARIGSIMLNAPLPPHMQRSWDLLNS 32 D +R+ + L+APLP +MQ+SWD++NS Sbjct: 440 DCSRLECLELDAPLPSYMQKSWDIINS 466 >ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform X1 [Glycine max] Length = 427 Score = 402 bits (1034), Expect = e-109 Identities = 216/409 (52%), Positives = 277/409 (67%), Gaps = 2/409 (0%) Frame = -2 Query: 1255 QWLILPPFTPTADGCSIGKKLYGRPEETSTTTALKWILKCCPHLPRSLVQKLFRLRQVRK 1076 +WL LPP + ++ +L P TTALKW+++CCPHLPR+LV KLFRLRQVR Sbjct: 30 KWLTLPPVSASSSASVELNQLSSTP-----TTALKWVVRCCPHLPRALVHKLFRLRQVRI 84 Query: 1075 ECSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTADNQSFSSEEDRKFVQSLE 896 +T +Q +RV AKD + GDRI LP+SV + PT S + + F+++L Sbjct: 85 H-PATVIQQQTFKRVAAKDTLNTGDRILLPQSVKVKQTPT----HSHLTPQQINFIRTLV 139 Query: 895 LYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVM 716 +YKD AI+V+NKPPGMPVQGG+ I+RSLD +AA L Y + +PPRLVHRLDRD SGILVM Sbjct: 140 IYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVM 199 Query: 715 GRTQLSTTVLHSVFREKTIGAFNDVLGGKNILQKRYLALVIGSPRRRQGSISVPLMKVVF 536 GRT STTVLHS+FREKT A +D+ K ILQ+RY ALV+G PRR +G ++ L KVV Sbjct: 200 GRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVV 259 Query: 535 DDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVLR 356 D+G+S+RIT+ D S + QHA+T+YRVIASS GYTWLEL+PLTGRKHQLRVHCAEVL Sbjct: 260 DNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLG 319 Query: 355 TPIVGDYKYGRQAHRKLEQY-LESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLHL 179 TPIVGDYKYG QAHRK + L + D + + +K + LHL Sbjct: 320 TPIVGDYKYGWQAHRKWGHFDLPNVEDSR--EELLNEEKLPFGLNLNKGSISENHPRLHL 377 Query: 178 HCKEMILPDISVVLQH-GNVADLDSARIGSIMLNAPLPPHMQRSWDLLN 35 HCK+M+LP+IS LQ+ + + D + + + L A LPP+MQRSWD+ N Sbjct: 378 HCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 426 >ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform X2 [Glycine max] Length = 429 Score = 399 bits (1025), Expect = e-108 Identities = 215/410 (52%), Positives = 276/410 (67%), Gaps = 3/410 (0%) Frame = -2 Query: 1255 QWLILPPFTPTADGCSIGKKLYGRPEETSTTTALKWILKCCPHLPRSLVQKLFRLRQVRK 1076 +WL LPP + ++ +L P TTALKW+++CCPHLPR+LV KLFRLRQVR Sbjct: 30 KWLTLPPVSASSSASVELNQLSSTP-----TTALKWVVRCCPHLPRALVHKLFRLRQVRI 84 Query: 1075 ECSSTETNEQRPR-RVGAKDLMGIGDRIYLPKSVDERSHPTTADNQSFSSEEDRKFVQSL 899 ++ + R RV AKD + GDRI LP+SV + PT S + + F+++L Sbjct: 85 HPATVIQQQTFKRVRVAAKDTLNTGDRILLPQSVKVKQTPT----HSHLTPQQINFIRTL 140 Query: 898 ELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILV 719 +YKD AI+V+NKPPGMPVQGG+ I+RSLD +AA L Y + +PPRLVHRLDRD SGILV Sbjct: 141 VIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILV 200 Query: 718 MGRTQLSTTVLHSVFREKTIGAFNDVLGGKNILQKRYLALVIGSPRRRQGSISVPLMKVV 539 MGRT STTVLHS+FREKT A +D+ K ILQ+RY ALV+G PRR +G ++ L KVV Sbjct: 201 MGRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVV 260 Query: 538 FDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVL 359 D+G+S+RIT+ D S + QHA+T+YRVIASS GYTWLEL+PLTGRKHQLRVHCAEVL Sbjct: 261 VDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVL 320 Query: 358 RTPIVGDYKYGRQAHRKLEQY-LESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLH 182 TPIVGDYKYG QAHRK + L + D + + +K + LH Sbjct: 321 GTPIVGDYKYGWQAHRKWGHFDLPNVEDSR--EELLNEEKLPFGLNLNKGSISENHPRLH 378 Query: 181 LHCKEMILPDISVVLQH-GNVADLDSARIGSIMLNAPLPPHMQRSWDLLN 35 LHCK+M+LP+IS LQ+ + + D + + + L A LPP+MQRSWD+ N Sbjct: 379 LHCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 428