BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00026684
         (1364 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus...   576   e-162
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   470   e-130
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   463   e-128
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   456   e-126
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   454   e-125
ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prun...   453   e-125
ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prun...   446   e-123
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           444   e-122
ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [...   439   e-120
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   436   e-120
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   435   e-119
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps...   427   e-117
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   426   e-117
ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr...   421   e-115
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   415   e-113
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   415   e-113
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   411   e-112
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   407   e-111
ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit...   402   e-109
ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mit...   399   e-108

>gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus guttatus]
          Length = 457

 Score =  576 bits (1484), Expect = e-162
 Identities = 299/432 (69%), Positives = 346/432 (80%), Gaps = 7/432 (1%)
 Frame = -2

Query: 1309 YFAAAATNSENSDKEKNI-QWLILPPFTPTADGCSIGKKLYGRPEETSTTTALKWILKCC 1133
            Y+A AAT +EN +KEKN  QWL LPPF P ADGCSIGK+L G+P +  TT ALKWILKCC
Sbjct: 28   YYATAAT-AENCEKEKNYDQWLTLPPFNPNADGCSIGKRLSGQPADAKTT-ALKWILKCC 85

Query: 1132 PHLPRSLVQKLFRLRQV-----RKECSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDER 968
            PH+PR LVQKLFRLRQV     RKE S+ E  EQRP+R+GAKDLM IGDRI+LPKSVD  
Sbjct: 86   PHIPRCLVQKLFRLRQVHFLLIRKESSNMEDKEQRPKRIGAKDLMDIGDRIFLPKSVDGT 145

Query: 967  SHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYL 788
            S  TTA++++F  E++ +FV+SLELYKD AIIVINKPPG+PVQGG+GI+RSLDELAAKYL
Sbjct: 146  SPSTTAESRNFFDEKEMEFVRSLELYKDPAIIVINKPPGLPVQGGIGIKRSLDELAAKYL 205

Query: 787  RYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGKNILQKRY 608
            ++D  E PRLVHRLDRDSSGILVMGRTQLSTT+LHSVFREKT GA N+V G K ILQK+Y
Sbjct: 206  KFDFTESPRLVHRLDRDSSGILVMGRTQLSTTILHSVFREKTFGASNNVCGNKKILQKKY 265

Query: 607  LALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGY 428
             ALVIGSPRRR+G ISVPL+KVV D+GKSERITVA+ +NTL  QHAVT+YRVIASS  GY
Sbjct: 266  WALVIGSPRRREGLISVPLVKVVLDNGKSERITVAENNNTLSAQHAVTEYRVIASSSRGY 325

Query: 427  TWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKA 248
            +WLELSPLTGRKHQLRVHCAEVL TPIVGDYKYG QAH+KL  +L+S SD K GD  SK 
Sbjct: 326  SWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKLGHHLDSVSDPKWGDEISKV 385

Query: 247  DKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPL 71
                           D+QF LHLHCKEM LPDI+  L++ ++ +DLD+A + SI L A L
Sbjct: 386  KNDTFALELESGSISDKQFRLHLHCKEMSLPDITQALKYASINSDLDTAEMKSITLEACL 445

Query: 70   PPHMQRSWDLLN 35
            P HMQRSW LL+
Sbjct: 446  PAHMQRSWSLLS 457


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  470 bits (1209), Expect = e-130
 Identities = 253/442 (57%), Positives = 308/442 (69%), Gaps = 17/442 (3%)
 Frame = -2

Query: 1306 FAAAATNSENSDKEKNIQWLILPPFTPTADGCSIGKKLYGRPEETST--------TTALK 1151
            FA +      + K K  +W  LP FTP  D  S+GK L G   + +T        TTALK
Sbjct: 38   FATSNDAVSEAHKSKKGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALK 97

Query: 1150 WILKCCPHLPRSLVQKLFRLRQVRKECSSTETN-------EQRPRRVGAKDLMGIGDRIY 992
            W+++CCP LPRSLVQKLFRLRQVR+E  +  T+       E R +RV AKDLM +GD+I 
Sbjct: 98   WVVRCCPQLPRSLVQKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQIL 157

Query: 991  LPKSVDERSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSL 812
            LP +V+E     +  ++   ++E+  FV +LELYKD AIIV+NKPPG+PVQGG+GI+RSL
Sbjct: 158  LPITVEEFP---SEKHEYHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSL 214

Query: 811  DELAAKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLG 635
            DELAA YLRYD  EPPRLVHRLDRDSSGIL+MGRTQ S T+LHS+FREKT GA N D+  
Sbjct: 215  DELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDT 274

Query: 634  GKNILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYR 455
             K ILQ+RY ALVIGSPRR +G IS PL KVV DDGKSERIT+ D   T+  QHA+T+YR
Sbjct: 275  KKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYR 334

Query: 454  VIASSPSGYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDL 275
            VI SS  GYTWLELSPLTGRKHQLRVHCAEVL TPIVGDYKYG QAHRK +Q  +S  + 
Sbjct: 335  VIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEK 394

Query: 274  KLGDMPSKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARI 98
             L +  S                 D+Q  LHLHCK+M+LP++S+ LQ+  + A+ D + +
Sbjct: 395  NLDENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSEL 454

Query: 97   GSIMLNAPLPPHMQRSWDLLNS 32
             S+   APLP HMQRSWD+LNS
Sbjct: 455  ESLEFVAPLPSHMQRSWDILNS 476


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum
            tuberosum]
          Length = 467

 Score =  463 bits (1192), Expect = e-128
 Identities = 248/435 (57%), Positives = 307/435 (70%), Gaps = 9/435 (2%)
 Frame = -2

Query: 1309 YFAAAATNSE--NSDKEKNIQWLILPPFTPTADGCSIGKKLYG-----RPEETSTTTALK 1151
            ++A   T ++  N ++ +  +WL LPPFT T +G ++G++L G     +   T+T TALK
Sbjct: 37   HYATTVTAAQVCNRNENEKAKWLTLPPFTATVNGAALGRELAGVKMDVKENSTNTMTALK 96

Query: 1150 WILKCCPHLPRSLVQKLFRLRQVRKECSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDE 971
            W+ +CCP LP+SLVQKLFRLRQVR++ S+ E  EQRP+RV AK+ M +GDRI+LP +V +
Sbjct: 97   WVQRCCPELPKSLVQKLFRLRQVRRDSSNVE--EQRPKRVSAKESMNVGDRIFLPITVQK 154

Query: 970  RSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKY 791
               P+       SSEE+RKFV SLELYKD  I+V+NKPPGMPVQGG+GI+RSLDELAAKY
Sbjct: 155  --FPSEKVVYYPSSEEERKFVHSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLDELAAKY 212

Query: 790  LRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQK 614
            +R+++ E PRLVHRLDRD SG+LVMGRTQLS + LHS+FREKT  + N D+   K ILQK
Sbjct: 213  MRHEYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQK 272

Query: 613  RYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPS 434
            +Y ALVIG PRR  G IS PL K+V D+GKSERIT+         Q+AVT+YR+I SS  
Sbjct: 273  KYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEK 332

Query: 433  GYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPS 254
            GYTWLELSPLTGRKHQLRVHCAE L TPIVGDYKYG QAHRKL+      S L LG    
Sbjct: 333  GYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLNLGVQIP 392

Query: 253  KADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGN-VADLDSARIGSIMLNA 77
            +                D+Q  LHLHCKEM+LP+IS+ LQ    V+D D   + SI L A
Sbjct: 393  RQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQVVSDTDLVDVESIKLVA 452

Query: 76   PLPPHMQRSWDLLNS 32
            PLP HMQ+SWD L+S
Sbjct: 453  PLPFHMQKSWDCLSS 467


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 476

 Score =  456 bits (1174), Expect = e-126
 Identities = 239/433 (55%), Positives = 306/433 (70%), Gaps = 11/433 (2%)
 Frame = -2

Query: 1297 AATNSENSDKEKN-IQWLILPPFTPTADGCSIGKKL--------YGRPEETSTTTALKWI 1145
            + T + + DK+K   +W  LPPFT T +G ++G++L        Y +P   + TTALKW+
Sbjct: 36   STTQTVHEDKQKRGNKWFTLPPFTDTVNGAALGRELSRSVGRDVYAKPSAAAATTALKWV 95

Query: 1144 LKCCPHLPRSLVQKLFRLRQVRKECSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDERS 965
             +CCP +PR+LVQKLFRLRQVR+E S  + + Q  +RVG KD M +GDRI LP SV E  
Sbjct: 96   TRCCPEIPRNLVQKLFRLRQVRREASDMDQSVQPLKRVGTKDSMNLGDRICLPISVKE-- 153

Query: 964  HPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLR 785
             P     +   SEE+ +F++SL LYKD AIIVINKPPG+PVQGG+GI+RSLDELAA  L 
Sbjct: 154  FPDHKQKEGHCSEEEAEFIRSLVLYKDPAIIVINKPPGLPVQGGIGIKRSLDELAATCLS 213

Query: 784  YDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNILQKRY 608
            YD  +PPRLVHRLDRD SGILVMGRTQ S TVLHSVFREKT GA +DV+   K+ILQ+RY
Sbjct: 214  YDLSQPPRLVHRLDRDCSGILVMGRTQTSATVLHSVFREKTFGASDDVIKHAKSILQRRY 273

Query: 607  LALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGY 428
            LALVIGSPR+++G ISVPL KVV D+GKS+RIT+ +K+  LP QHA+T Y+VI SS  G+
Sbjct: 274  LALVIGSPRQQEGLISVPLGKVVVDNGKSDRITILNKAQCLPSQHAITKYKVIGSSCPGF 333

Query: 427  TWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKA 248
            TWLEL PLTGRKHQLRVHCAEVL TPIVGDYKYG + H+  +    S ++    +  SK 
Sbjct: 334  TWLELIPLTGRKHQLRVHCAEVLGTPIVGDYKYGWRTHKDWKPVAWSKTECHSNEERSKR 393

Query: 247  DKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPL 71
                           ++   LHLH K+M+LP++S+ LQ+  + A+ D + + SI L AP+
Sbjct: 394  KNLPFDLNMDSGSIDEKNLRLHLHSKQMVLPNVSLALQNVKLHAECDLSGLESIELVAPM 453

Query: 70   PPHMQRSWDLLNS 32
            P +MQ+SWD+ NS
Sbjct: 454  PSYMQKSWDITNS 466


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
            lycopersicum]
          Length = 467

 Score =  454 bits (1168), Expect = e-125
 Identities = 245/435 (56%), Positives = 304/435 (69%), Gaps = 9/435 (2%)
 Frame = -2

Query: 1309 YFAAAATNSE--NSDKEKNIQWLILPPFTPTADGCSIGKKLYG-----RPEETSTTTALK 1151
            ++A   T+++  N ++ +  +WL LPPFT   +G ++G++L G         T+T TALK
Sbjct: 37   HYATTVTDAQVCNRNENEKAKWLTLPPFTAAVNGAALGRELAGVKMDVNENSTNTMTALK 96

Query: 1150 WILKCCPHLPRSLVQKLFRLRQVRKECSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDE 971
            W+ +CCP LP+SLVQKLFRLRQVR++ S+ E  EQRP+RV AK+ M +GDRI+LP +V +
Sbjct: 97   WVQRCCPELPKSLVQKLFRLRQVRRDSSNVE--EQRPKRVSAKESMNVGDRIFLPITVQK 154

Query: 970  RSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKY 791
               P+       SSEE+RKFV SLELYKD+ IIV+NKPPGMPVQGG+GI+RSLDELAAKY
Sbjct: 155  --FPSEKVVYYPSSEEERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKY 212

Query: 790  LRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQK 614
            + + + E PRLVHRLDRD SG+LVMGRTQLS + LHS+FREKT  + N D+   K ILQK
Sbjct: 213  MSHQYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQK 272

Query: 613  RYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPS 434
            +Y ALVIG PRR  G IS PL K+V D+GKSERIT+         Q+AVT+YR+I SS  
Sbjct: 273  KYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVREPSAQYAVTEYRIIGSSEK 332

Query: 433  GYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPS 254
            GYTWLELSPLTGRKHQLRVHCAE L TPIVGDYKYG QAHRKL+      S L L     
Sbjct: 333  GYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLNLVVEIP 392

Query: 253  KADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGN-VADLDSARIGSIMLNA 77
            +                D+Q  LHLHCKEM+LP+IS+ LQ    V+D D   + SI L A
Sbjct: 393  RQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQVVSDADLVDVESIKLVA 452

Query: 76   PLPPHMQRSWDLLNS 32
            PLP HMQ+SWD L++
Sbjct: 453  PLPFHMQKSWDCLSA 467


>ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
            gi|462395210|gb|EMJ01009.1| hypothetical protein
            PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  453 bits (1166), Expect = e-125
 Identities = 251/450 (55%), Positives = 307/450 (68%), Gaps = 28/450 (6%)
 Frame = -2

Query: 1297 AATNSENSDKEKNIQ-WLILPPFTPTADGCSIGKKL-----YGRPEET---------STT 1163
            A T + + D+EK  + W  LPPFT T +G ++GK+L     YGR   T         +TT
Sbjct: 34   ATTETFHEDREKRGEKWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTT 93

Query: 1162 TALKWILKCCPHLPRSLVQKLFRLRQVRKE-----CSS--TETNEQRPRRVGAKDLMGIG 1004
            TALKW+ +CCP LPRSLVQKLFRLRQVR+E     CS    E  E+  +RV AKD M +G
Sbjct: 94   TALKWVTRCCPELPRSLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVG 153

Query: 1003 DRIYLPKSVDE----RSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQG 836
            DRI+LP SV E    +        + + SEE+  F++SLELYKD AIIVINKPPGMPVQG
Sbjct: 154  DRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQG 213

Query: 835  GVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIG 656
            G+GI+RSLDELAA  L YD  EPPRLVHRLDRDSSGILVMGRTQ S TVLHS+FREKT G
Sbjct: 214  GIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFG 273

Query: 655  AFNDVLG-GKNILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPG 479
            A ND +   K ILQ+RY ALVIGSPR+R+G IS PL KVV D+GKS+RIT+ + S TLP 
Sbjct: 274  ASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPS 333

Query: 478  QHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQ 299
            QHA+T Y+VI S   GYTWLEL+PLTGRKHQLRVHCAEVLRTPIVGDYKYG Q HR  + 
Sbjct: 334  QHAITKYKVIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKP 393

Query: 298  YLESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV- 122
               S ++    +   K                ++   LHLHCK+M+LP++++ LQ+  + 
Sbjct: 394  LAWSNNECHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQNVKLH 453

Query: 121  ADLDSARIGSIMLNAPLPPHMQRSWDLLNS 32
            +D D + + S+ L A LP  MQRSW++ NS
Sbjct: 454  SDSDLSELESLELVAALPSFMQRSWNITNS 483


>ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
            gi|462395209|gb|EMJ01008.1| hypothetical protein
            PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  446 bits (1148), Expect = e-123
 Identities = 250/450 (55%), Positives = 306/450 (68%), Gaps = 28/450 (6%)
 Frame = -2

Query: 1297 AATNSENSDKEKNIQ-WLILPPFTPTADGCSIGKKL-----YGRPEET---------STT 1163
            A T + + D+EK  + W  LPPFT T +G ++GK+L     YGR   T         +TT
Sbjct: 34   ATTETFHEDREKRGEKWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTT 93

Query: 1162 TALKWILKCCPHLPRSLVQKLFRLRQVRKE-----CSS--TETNEQRPRRVGAKDLMGIG 1004
            TALKW+ +CCP LPRSLVQKLFRLRQVR+E     CS    E  E+  +RV AKD M +G
Sbjct: 94   TALKWVTRCCPELPRSLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVG 153

Query: 1003 DRIYLPKSVDE----RSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQG 836
            DRI+LP SV E    +        + + SEE+  F++SLELYKD AIIVINKPPGMPVQG
Sbjct: 154  DRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQG 213

Query: 835  GVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIG 656
            G+GI+RSLDELAA  L YD  EPPRLVHRLDRDSSGILVMGRTQ S TVLHS+FREKT G
Sbjct: 214  GIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFG 273

Query: 655  AFNDVL-GGKNILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPG 479
            A ND +   K ILQ+RY ALVIGSPR+R+G IS PL KVV D+GKS+RIT+ + S TLP 
Sbjct: 274  ASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPS 333

Query: 478  QHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQ 299
            QHA+T Y+VI S    YTWLEL+PLTGRKHQLRVHCAEVLRTPIVGDYKYG Q HR  + 
Sbjct: 334  QHAITKYKVIGS--PCYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKP 391

Query: 298  YLESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV- 122
               S ++    +   K                ++   LHLHCK+M+LP++++ LQ+  + 
Sbjct: 392  LAWSNNECHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQNVKLH 451

Query: 121  ADLDSARIGSIMLNAPLPPHMQRSWDLLNS 32
            +D D + + S+ L A LP  MQRSW++ NS
Sbjct: 452  SDSDLSELESLELVAALPSFMQRSWNITNS 481


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  444 bits (1142), Expect = e-122
 Identities = 237/433 (54%), Positives = 295/433 (68%), Gaps = 18/433 (4%)
 Frame = -2

Query: 1276 SDKEKNIQWLILPPFTPTADGCSIGKKLYGRPEE---------TSTTTALKWILKCCPHL 1124
            S ++   +W  LPP T T DG  +GK + G  ++         ++ TTALKW+++CCP L
Sbjct: 41   SSEKNGTKWFTLPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPEL 100

Query: 1123 PRSLVQKLFRLRQVRKECSSTET-------NEQRPRRVGAKDLMGIGDRIYLPKSVDERS 965
            PRSLVQKLFRLRQVR+E  + E         + R RRV AKD + +GD+I+LP SV E  
Sbjct: 101  PRSLVQKLFRLRQVRRESFNVEDCNAGDQLGKPRLRRVSAKDSLNLGDKIFLPISVKELP 160

Query: 964  HPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLR 785
                   + F +EE+ KF++SLELYKD AI+V+NKPPG+PVQGG+GI+ SLD+LA   L 
Sbjct: 161  ---VEKKECFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCLS 217

Query: 784  YDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFND-VLGGKNILQKRY 608
            YD+ EPPRLVHRLDRD SGILVMGRTQ S TVLHS+FREKT GA ND  + GK +LQ+RY
Sbjct: 218  YDYTEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRY 277

Query: 607  LALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGY 428
             A VIGSPR   G IS PL KVV D+GKS+RITV + S+TL  QHA+T Y+VI SS  GY
Sbjct: 278  WAFVIGSPRHPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHGY 337

Query: 427  TWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKA 248
            TWLELSPLTGRKHQLRVHCAEVL TP+VGDYKYG QAHR  +       D K  ++  K 
Sbjct: 338  TWLELSPLTGRKHQLRVHCAEVLGTPMVGDYKYGWQAHRDWKPLHWPDPDNKCIEVLPKR 397

Query: 247  DKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQH-GNVADLDSARIGSIMLNAPL 71
                           ++   LHLHCK+M+LP+IS VLQ+    +D + +R+  + L+APL
Sbjct: 398  KNLPFGLNMDNGSISEKHPRLHLHCKQMVLPNISHVLQNVQRYSDYELSRLERLKLDAPL 457

Query: 70   PPHMQRSWDLLNS 32
            P +MQRSW L NS
Sbjct: 458  PSYMQRSWHLTNS 470


>ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
            gi|508706469|gb|EOX98365.1| Ribosomal pseudouridine
            synthase, putative [Theobroma cacao]
          Length = 477

 Score =  439 bits (1129), Expect = e-120
 Identities = 237/427 (55%), Positives = 296/427 (69%), Gaps = 11/427 (2%)
 Frame = -2

Query: 1279 NSDKEKNIQWLILPPFTPTADGCSIGKKLYGRPEETST--TTALKWILKCCPHLPRSLVQ 1106
            NS+K+K  +W  LPPFT T +   +G KL G+P   +   TTA+KW+++CCP LPRSLVQ
Sbjct: 54   NSEKKKKNKWFTLPPFTKTVNASVLGAKLSGKPHSKAANETTAVKWVMRCCPELPRSLVQ 113

Query: 1105 KLFRLRQVRKECSSTET-------NEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTAD 947
            KLFRLRQVR+E    E           + +RVGAKD + IGDRI+LP SV E        
Sbjct: 114  KLFRLRQVRRESHVLEVAGDGCQVQTVQLKRVGAKDALNIGDRIFLPFSVREFREEK--- 170

Query: 946  NQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEP 767
             +S  +EE+  F++ LELYKD AIIV+NKPPGMPVQGG+GI+ SLD+LAA  L +D+ EP
Sbjct: 171  QESGCTEEELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDKLAAACLCFDYSEP 230

Query: 766  PRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAF-NDVLGGKNILQKRYLALVIG 590
            PRLVHRLDRDSSGILVMGRTQ+S T+LHSVFRE+T  A  +DV   K ILQKRY ALVIG
Sbjct: 231  PRLVHRLDRDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRILQKRYWALVIG 290

Query: 589  SPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELS 410
            SPRR +G I  PL KVV DDGKS+RITV D S  +  Q A T+Y+VI ++  GYTWLELS
Sbjct: 291  SPRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKTTSHGYTWLELS 350

Query: 409  PLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXX 230
            PLTGRKHQLRVHCAEVL TPIVGDYKYG QAHR+ +   ES       D   + +     
Sbjct: 351  PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRRWQHLPESDLKKSSNDKCPEENMLPFG 410

Query: 229  XXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNVA-DLDSARIGSIMLNAPLPPHMQR 53
                      ++  LHLHC+EMI P++S  LQ+  ++ D D +++ S+ + APLP +MQ+
Sbjct: 411  LNMDSGSISAKRPRLHLHCREMIFPNVSQALQNLQLSTDHDLSKLKSLEVVAPLPSYMQK 470

Query: 52   SWDLLNS 32
            SWD++NS
Sbjct: 471  SWDIMNS 477


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  436 bits (1122), Expect = e-120
 Identities = 239/430 (55%), Positives = 296/430 (68%), Gaps = 11/430 (2%)
 Frame = -2

Query: 1288 NSENSDKEKNIQWLILPPFTPTADGCSIGKKLYGRPEET--STTTALKWILKCCPHLPRS 1115
            ++ N D E+  +W  LPPFT T DG ++G++L   P ++  S TTALKW+L+CCP LPR+
Sbjct: 69   DNNNGDDERRGKWFTLPPFTSTIDGSALGRQL-ACPSKSPISETTALKWVLQCCPGLPRN 127

Query: 1114 LVQKLFRLRQVRKECSSTETN-------EQRPRRVGAKDLMGIGDRIYLPKSVDERSHPT 956
             VQKLFRL QVR+E  S +++       E + +RV AKD + +GDRI+LP S+ E     
Sbjct: 128  FVQKLFRLSQVRRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQESP--- 184

Query: 955  TADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDH 776
            +   +   +EE+  F+QSLELYKDSAIIVINKP GMPVQGG+GIRRS+DELAA  L YD+
Sbjct: 185  SRKEKCPCTEEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDY 244

Query: 775  MEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQKRYLAL 599
             EPPRLVHRLDRDSSGILVMGRTQ S TVLHS+FREKT  A   D    K ILQ+ Y AL
Sbjct: 245  SEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWAL 304

Query: 598  VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 419
            V+G+PR  +G IS PL KVV D+GKS+RITV +    +  QHAVT Y+VI  S  GYTWL
Sbjct: 305  VVGTPRCSKGVISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWL 364

Query: 418  ELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKX 239
            +LSPLTGRKHQLRVHCAEVL TPIVGDYKYG Q HRK +Q+  S  +    D   K    
Sbjct: 365  KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTL 424

Query: 238  XXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNVAD-LDSARIGSIMLNAPLPPH 62
                        ++Q  LHLHCKEM LP++S  +Q   ++   D +++ S+ L APLP H
Sbjct: 425  HFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLESLKLVAPLPSH 484

Query: 61   MQRSWDLLNS 32
            MQRSWD+LNS
Sbjct: 485  MQRSWDVLNS 494


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            gi|550331407|gb|EEE87831.2| hypothetical protein
            POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  435 bits (1119), Expect = e-119
 Identities = 242/432 (56%), Positives = 299/432 (69%), Gaps = 14/432 (3%)
 Frame = -2

Query: 1291 TNSENS-DKEKNIQWLILPPFTPTADGCSIGKKLYGR--PEETSTTTALKWILKCCPHLP 1121
            T S+N  + +K  +W  LPP+T T +G  +G  L  R   +  S TTALKW+L+CCP LP
Sbjct: 44   TKSQNHYENDKRGKWFTLPPYTSTINGSVLGIALSARIPAKSASETTALKWVLRCCPELP 103

Query: 1120 RSLVQKLFRLRQVRKECSSTET-------NEQRPRRVGAKDLMGIGDRIYLPKSVDERSH 962
            R+LVQKLFRLRQVR+E    E+        E R +RV AKD M +GDRI+LP SV     
Sbjct: 104  RNLVQKLFRLRQVRRESPVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKV--- 160

Query: 961  PTTADNQS-FSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLR 785
               A+ Q    +EE+  F++ LELYKD+AIIV+NKPPGMPVQGG+GI+RSLDEL+A    
Sbjct: 161  -LPAEKQDCHCNEEEINFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFS 219

Query: 784  YDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGK-NILQKRY 608
             D+ EPPRLVHRLDRD SGILVMGRTQ S TVLH++FREKT+ A ND +G K  ILQ++Y
Sbjct: 220  SDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKY 279

Query: 607  LALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGY 428
             ALVIGSPRR +G IS PL KVV D+GKS+RITV + S  L  QHAVT YRVI SS  G+
Sbjct: 280  WALVIGSPRRPKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESS-HGF 338

Query: 427  TWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKA 248
            TWLELSPLTGRKHQLRVHCAEVL TPIVGDYKY  QAHR  +Q   S  +    D  S +
Sbjct: 339  TWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSND-KSLS 397

Query: 247  DKXXXXXXXXXXXXXDEQF-SLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAP 74
            +K              E+   LHLHCK+M+LPD+S  LQ   + +D D +++ S+  +AP
Sbjct: 398  EKILPFALDLDSGSISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAP 457

Query: 73   LPPHMQRSWDLL 38
            LPP+M++SWD+L
Sbjct: 458  LPPYMKKSWDIL 469


>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
            gi|482566291|gb|EOA30480.1| hypothetical protein
            CARUB_v10013603mg [Capsella rubella]
          Length = 476

 Score =  427 bits (1098), Expect = e-117
 Identities = 236/426 (55%), Positives = 293/426 (68%), Gaps = 15/426 (3%)
 Frame = -2

Query: 1255 QWLILPPFTPTADGCSIGKKLYGRPE------ETSTTTALKWILKCCPHLPRSLVQKLFR 1094
            +WL LPPF+PT DG ++GK+L    +      ++STTTAL+WIL+C P LPR+LVQKLFR
Sbjct: 54   KWLTLPPFSPTVDGTAVGKELASEGDSITGSTDSSTTTALRWILRCRPDLPRTLVQKLFR 113

Query: 1093 LRQVRKE----CSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTADNQSFS-S 929
            LRQVR+E    C   E    + +RV AK+ + +GDRIYLP SVD  + P  A  +SF  S
Sbjct: 114  LRQVRREMSVSCDGDEVQRSQLKRVAAKESLNVGDRIYLPLSVDNDAPPPPAKKESFRCS 173

Query: 928  EEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHR 749
            EE+RKFV SL LYKD +IIV+NKP GM VQGG GI+ S+DELAA  L +D  E PRLVHR
Sbjct: 174  EEERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELAATCLTFDKSESPRLVHR 233

Query: 748  LDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNI--LQKRYLALVIGSPRR 578
            LDRD SG+LV+ RTQ + TVLHS+FREKT GA     G  KNI  L+++Y+ALVIG PRR
Sbjct: 234  LDRDCSGLLVLARTQTAATVLHSIFREKTSGA--SAYGVKKNIKSLKRKYMALVIGCPRR 291

Query: 577  RQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTG 398
            ++G IS PL KVV DDGKS+RITV D    +  QHA+T+YRVI SSP GYTWLEL PLTG
Sbjct: 292  QRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTG 351

Query: 397  RKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXX 218
            RKHQLRVHCAEVL TPIVGDYKYG QAH+  E  + S       + P+K           
Sbjct: 352  RKHQLRVHCAEVLGTPIVGDYKYGWQAHKSREPLVTSE------NTPTKPQSSPFGLDLD 405

Query: 217  XXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPLPPHMQRSWDL 41
                  +Q  LHLH K++ LP+IS +L+   V +D D + I S+  +APLP HMQ S++L
Sbjct: 406  GGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDIDSLKFDAPLPTHMQLSFNL 465

Query: 40   LNSNLQ 23
            L S ++
Sbjct: 466  LKSKVE 471


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  426 bits (1096), Expect = e-117
 Identities = 236/425 (55%), Positives = 294/425 (69%), Gaps = 7/425 (1%)
 Frame = -2

Query: 1285 SENSDKEKNIQWLILPPFTPTADGCSIGKKLYGRP--EETSTTTALKWILKCCPHLPRSL 1112
            S+N+ K    ++  LPP+T T  G ++GK L      + ++ TTALKW+L+CCP LPR+L
Sbjct: 118  SKNNTKNTG-KFFTLPPYTSTISGSALGKALSATATAKASTETTALKWVLRCCPELPRNL 176

Query: 1111 VQKLFRLRQVRKECSSTETNEQ--RPRRVGAKDLMGIGDRIYLPKSVDERSHPTTADNQS 938
            VQKLFRLRQV++E  +    E   + +RV AKDLM +GDRI+LP SV           + 
Sbjct: 177  VQKLFRLRQVKRELLNVGDGEMEHKTKRVAAKDLMNVGDRIFLPISVQALPFEK---QKC 233

Query: 937  FSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRL 758
               E++  F++ LELYKD AIIV+NKPPGMPVQGG+GI+ S DELAA  L YD+ EPPRL
Sbjct: 234  HCGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRL 293

Query: 757  VHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNILQKRYLALVIGSPR 581
            VHRLDRDSSGILVMGRTQ ST VLHSVFREKT  A N  +G  + ILQ++Y ALVIGSPR
Sbjct: 294  VHRLDRDSSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPR 353

Query: 580  RRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLT 401
            R++G IS PL KVV DDGKS+RITV + + +   QHAVT YRV+ SS  GY WLELSP+T
Sbjct: 354  RQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVMESS-HGYAWLELSPIT 412

Query: 400  GRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXX 221
            GRKHQLRVHCAEVL TPIVGDYKYG Q HRK +Q L   +  K+ +  +   K       
Sbjct: 413  GRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQ-LPFPNLEKISNENALCKKILPFGID 471

Query: 220  XXXXXXDEQF-SLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPLPPHMQRSW 47
                   E+   LHLHCK+M+LPD+S  L+     ++ D + + SI L+APLP +MQRSW
Sbjct: 472  LESGSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQRSW 531

Query: 46   DLLNS 32
            D+LNS
Sbjct: 532  DILNS 536


>ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum]
            gi|557107647|gb|ESQ47954.1| hypothetical protein
            EUTSA_v10020633mg [Eutrema salsugineum]
          Length = 477

 Score =  421 bits (1081), Expect = e-115
 Identities = 229/433 (52%), Positives = 292/433 (67%), Gaps = 12/433 (2%)
 Frame = -2

Query: 1285 SENSDKEKNIQWLILPPFTPTADGCSIGKKLYG-----RPEETSTTTALKWILKCCPHLP 1121
            +++ D +   +WL LPPF+PT D  ++GK+L+      +     +TTAL+WIL+C P LP
Sbjct: 47   ADDDDDDPRGKWLTLPPFSPTIDAAAVGKELFSDGDSVKASSDGSTTALRWILRCRPDLP 106

Query: 1120 RSLVQKLFRLRQVRKE----CSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTT 953
            R+LVQKLFRLRQVR+E    C   E    + +RV AK+ + +GDRIYLP SV+  + P  
Sbjct: 107  RTLVQKLFRLRQVRREMSLSCDGDELQRSQLKRVAAKESLNLGDRIYLPLSVNNDAPPPA 166

Query: 952  ADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHM 773
                   SEE+RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA  L +   
Sbjct: 167  KKESFCCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDELAATCLTFGKS 226

Query: 772  EPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGKNI--LQKRYLAL 599
            E PRLVHRLDRD SG+LV+GRTQ + TVLHS+FREKT GA +     KNI  L+++YLAL
Sbjct: 227  ESPRLVHRLDRDCSGLLVLGRTQTAATVLHSIFREKTSGA-SAYSVKKNIKSLKRKYLAL 285

Query: 598  VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 419
            VIG PRR++G IS PL KVV DDGKS+RITV D    +  QHA+T+YRVI SSP GYTWL
Sbjct: 286  VIGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWL 345

Query: 418  ELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKX 239
            EL PLTGRKHQLRVHCAEVL TPI+GDYKYG QAH+  E ++ S      G+ P+K    
Sbjct: 346  ELRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQAHKSREPFVSS------GNTPTKPSLS 399

Query: 238  XXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPLPPH 62
                         +Q  LHLH K++ LP+IS +L+   V +D DS+    +  +APLP H
Sbjct: 400  PFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEQLEVSSDSDSSEHDCLKFDAPLPAH 459

Query: 61   MQRSWDLLNSNLQ 23
            MQ S++LL S ++
Sbjct: 460  MQLSFNLLKSRVE 472


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
            gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
            pseudouridine synthase 4, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 4; AltName:
            Full=RNA-uridine isomerase 4; Flags: Precursor
            gi|11994467|dbj|BAB02469.1| unnamed protein product
            [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
            thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
            synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  415 bits (1067), Expect = e-113
 Identities = 230/425 (54%), Positives = 290/425 (68%), Gaps = 14/425 (3%)
 Frame = -2

Query: 1255 QWLILPPFTPTADGCSIGKKLYGRPE------ETSTTTALKWILKCCPHLPRSLVQKLFR 1094
            +WL LPPF+PT DG ++GK L    +      + S TTAL+WIL+C P LPR+LVQKLFR
Sbjct: 54   KWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFR 113

Query: 1093 LRQVRKECSST----ETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTT-ADNQSFS- 932
            LRQVR+E S +    E    + +RV AK+ + +GDRIYLP SVD  +  T  A  +SF  
Sbjct: 114  LRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQC 173

Query: 931  SEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVH 752
            S+E+RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA  L++D  E PRLVH
Sbjct: 174  SDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVH 233

Query: 751  RLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQKRYLALVIGSPRRR 575
            RLDRD SG+LV+ RTQ + TVLHS+FREKT GA    V      L+++Y+ALVIG P R+
Sbjct: 234  RLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQ 293

Query: 574  QGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGR 395
            +G IS PL KVV DDGKSERITV D    +  QHA+T+YRVI SSP GYTWLEL PLTGR
Sbjct: 294  RGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGR 353

Query: 394  KHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMPSKADKXXXXXXXXX 215
            KHQLRVHCAEVL TPIVGDYKYG QAH+  E ++ S ++      P+K            
Sbjct: 354  KHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENN------PTKQSSSPFGLDLDG 407

Query: 214  XXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLNAPLPPHMQRSWDLL 38
                 +Q  LHLH K++ LP+IS +L+   V +D D + + S+  +APLP HMQ S++LL
Sbjct: 408  GDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLL 467

Query: 37   NSNLQ 23
             S ++
Sbjct: 468  KSRVE 472


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 477

 Score =  415 bits (1067), Expect = e-113
 Identities = 234/439 (53%), Positives = 297/439 (67%), Gaps = 16/439 (3%)
 Frame = -2

Query: 1291 TNSENSDKEKNIQWLILPPFTPTADGCSIGKKLYGRPE------ETSTTTALKWILKCCP 1130
            + ++  D   N  WL LPPF+PT DG ++GK L    +      + S TTAL+WIL+C P
Sbjct: 44   STAQTDDSRGN--WLTLPPFSPTIDGTAVGKDLLSDGDSVKASTDNSKTTALRWILRCRP 101

Query: 1129 HLPRSLVQKLFRLRQVRKECSST----ETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSH 962
             LPR+LVQKLFRLRQVR++ S +    E    + +RV AK+ + +GDRIYLP SVD  + 
Sbjct: 102  DLPRTLVQKLFRLRQVRRQMSLSVDGHELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTP 161

Query: 961  PTT-ADNQSFS-SEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYL 788
            PT  A  +SF  SEE+RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA  L
Sbjct: 162  PTPPAKKESFQCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAATCL 221

Query: 787  RYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNI--LQ 617
             +D  E PRLVHRLDRD SG+LV+ RTQ + TVLHS+FREKT GA     G  KNI  L+
Sbjct: 222  TFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTCGA--SAYGVKKNIKSLK 279

Query: 616  KRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSP 437
            ++Y+ALVIG PRR++G IS PL KVV DDGKS+RITV D    +  QHA+T+Y+VI SSP
Sbjct: 280  RKYMALVIGCPRRQKGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYKVIESSP 339

Query: 436  SGYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRKLEQYLESASDLKLGDMP 257
             GYTWLEL PLTGRKHQLRVHCAEVL TPI+GDYKYG QAH+  E ++ S +       P
Sbjct: 340  HGYTWLELRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQAHKAREPFVSSET------TP 393

Query: 256  SKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNV-ADLDSARIGSIMLN 80
            +K                 +Q  LHLH K++ LP+IS +L+   V +D D + + S+  +
Sbjct: 394  TKPSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFD 453

Query: 79   APLPPHMQRSWDLLNSNLQ 23
            APLP HMQ S++LL S ++
Sbjct: 454  APLPSHMQLSFNLLKSRVE 472


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  411 bits (1057), Expect = e-112
 Identities = 226/451 (50%), Positives = 295/451 (65%), Gaps = 28/451 (6%)
 Frame = -2

Query: 1303 AAAATNSENSDKEKNIQWLILPPFTPTADGCSIGKKLY---GRPE---ETSTTTALKWIL 1142
            A+   + + ++K  N +W  LPP+T T +G  +G ++    G+ E    T+  TALKW++
Sbjct: 44   ASEPVSQQKNEKGSN-RWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVI 102

Query: 1141 KCCPHLPRSLVQKLFRLRQVRKECSSTETNE------QRPRRVGAKDLMGIGDRIYLPKS 980
            +CCP LPRSLVQKLFRLR+VR+  S  E +E       + +RV AKD++ +GD+I+LP S
Sbjct: 103  RCCPELPRSLVQKLFRLRKVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPMS 162

Query: 979  VDERSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELA 800
            V   S   T D   + ++E+  F+ SL L+KD AI+VINKPPG+PVQGG+G++RSLDELA
Sbjct: 163  VQVFSTEKTRD---YCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELA 219

Query: 799  AKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGA---FNDVLGGK 629
            A  L Y + EPPRLVHRLDRDSSGIL+MGRT  ST++LHSVFREKT  A    N V   K
Sbjct: 220  ASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEK 279

Query: 628  NILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVI 449
             IL KRY ALVIGSPRR +G I+ PL K+V DDG+SE+I V D +  +P Q A+T Y+VI
Sbjct: 280  KILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI 339

Query: 448  ASSPSGYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRK------------- 308
              S  GYTWLEL PLTGRKHQLRVHCAEVL TPIVGDYKYG QAH+              
Sbjct: 340  -KSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFCSNFHKNQG 398

Query: 307  LEQYLESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHG 128
             +Q+L    D + G +   + +                  LHLHCK++ LPD+S  L H 
Sbjct: 399  KKQFLPFGLDFESGSIAENSPR------------------LHLHCKQLTLPDVSFAL-HN 439

Query: 127  NVADLDSARIGSIMLNAPLPPHMQRSWDLLN 35
            +  D D +R+  + L+APLP +MQ+SWD++N
Sbjct: 440  DSLDRDCSRLECLELDAPLPSYMQKSWDIIN 470


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 466

 Score =  407 bits (1046), Expect = e-111
 Identities = 223/447 (49%), Positives = 293/447 (65%), Gaps = 23/447 (5%)
 Frame = -2

Query: 1303 AAAATNSENSDKEKNIQWLILPPFTPTADGCSIGKKLY---GRPE---ETSTTTALKWIL 1142
            A+   + + ++K  N +W  LPP+T T +G  +G ++    G+ E    T+  TALKW++
Sbjct: 44   ASEPVSQQKNEKGSN-RWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVI 102

Query: 1141 KCCPHLPRSLVQKLFRLRQVRKECS-STETNEQRPRRVGAKDLMGIGDRIYLPKSVDERS 965
            +CCP LPRSLVQKLFRLR+V ++ +     +  + +RV AKD++ +GD+I+LP SV   S
Sbjct: 103  RCCPELPRSLVQKLFRLRKVPRQLNVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQVFS 162

Query: 964  HPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLR 785
               T D   + ++E+  F+ SL L+KD AI+VINKPPG+PVQGG+G++RSLDELAA  L 
Sbjct: 163  TEKTRD---YCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLS 219

Query: 784  YDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGA---FNDVLGGKNILQK 614
            Y + EPPRLVHRLDRDSSGIL+MGRT  ST++LHSVFREKT  A    N V   K IL K
Sbjct: 220  YGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLK 279

Query: 613  RYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPS 434
            RY ALVIGSPRR +G I+ PL K+V DDG+SE+I V D +  +P Q A+T Y+VI  S  
Sbjct: 280  RYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHH 338

Query: 433  GYTWLELSPLTGRKHQLRVHCAEVLRTPIVGDYKYGRQAHRK-------------LEQYL 293
            GYTWLEL PLTGRKHQLRVHCAEVL TPIVGDYKYG QAH+               +Q+L
Sbjct: 339  GYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFCSNFHKNQGKKQFL 398

Query: 292  ESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLHLHCKEMILPDISVVLQHGNVADL 113
                D + G +     +                  LHLHCK++ LPD+S  L H +  D 
Sbjct: 399  PFGLDFESGSIAENNPR------------------LHLHCKQLTLPDVSFAL-HNDSLDR 439

Query: 112  DSARIGSIMLNAPLPPHMQRSWDLLNS 32
            D +R+  + L+APLP +MQ+SWD++NS
Sbjct: 440  DCSRLECLELDAPLPSYMQKSWDIINS 466


>ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 427

 Score =  402 bits (1034), Expect = e-109
 Identities = 216/409 (52%), Positives = 277/409 (67%), Gaps = 2/409 (0%)
 Frame = -2

Query: 1255 QWLILPPFTPTADGCSIGKKLYGRPEETSTTTALKWILKCCPHLPRSLVQKLFRLRQVRK 1076
            +WL LPP + ++       +L   P     TTALKW+++CCPHLPR+LV KLFRLRQVR 
Sbjct: 30   KWLTLPPVSASSSASVELNQLSSTP-----TTALKWVVRCCPHLPRALVHKLFRLRQVRI 84

Query: 1075 ECSSTETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTADNQSFSSEEDRKFVQSLE 896
               +T   +Q  +RV AKD +  GDRI LP+SV  +  PT     S  + +   F+++L 
Sbjct: 85   H-PATVIQQQTFKRVAAKDTLNTGDRILLPQSVKVKQTPT----HSHLTPQQINFIRTLV 139

Query: 895  LYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVM 716
            +YKD AI+V+NKPPGMPVQGG+ I+RSLD +AA  L Y + +PPRLVHRLDRD SGILVM
Sbjct: 140  IYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVM 199

Query: 715  GRTQLSTTVLHSVFREKTIGAFNDVLGGKNILQKRYLALVIGSPRRRQGSISVPLMKVVF 536
            GRT  STTVLHS+FREKT  A +D+   K ILQ+RY ALV+G PRR +G ++  L KVV 
Sbjct: 200  GRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVV 259

Query: 535  DDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVLR 356
            D+G+S+RIT+ D S  +  QHA+T+YRVIASS  GYTWLEL+PLTGRKHQLRVHCAEVL 
Sbjct: 260  DNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLG 319

Query: 355  TPIVGDYKYGRQAHRKLEQY-LESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLHL 179
            TPIVGDYKYG QAHRK   + L +  D +  +     +K             +    LHL
Sbjct: 320  TPIVGDYKYGWQAHRKWGHFDLPNVEDSR--EELLNEEKLPFGLNLNKGSISENHPRLHL 377

Query: 178  HCKEMILPDISVVLQH-GNVADLDSARIGSIMLNAPLPPHMQRSWDLLN 35
            HCK+M+LP+IS  LQ+  + +  D + +  + L A LPP+MQRSWD+ N
Sbjct: 378  HCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 426


>ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 429

 Score =  399 bits (1025), Expect = e-108
 Identities = 215/410 (52%), Positives = 276/410 (67%), Gaps = 3/410 (0%)
 Frame = -2

Query: 1255 QWLILPPFTPTADGCSIGKKLYGRPEETSTTTALKWILKCCPHLPRSLVQKLFRLRQVRK 1076
            +WL LPP + ++       +L   P     TTALKW+++CCPHLPR+LV KLFRLRQVR 
Sbjct: 30   KWLTLPPVSASSSASVELNQLSSTP-----TTALKWVVRCCPHLPRALVHKLFRLRQVRI 84

Query: 1075 ECSSTETNEQRPR-RVGAKDLMGIGDRIYLPKSVDERSHPTTADNQSFSSEEDRKFVQSL 899
              ++    +   R RV AKD +  GDRI LP+SV  +  PT     S  + +   F+++L
Sbjct: 85   HPATVIQQQTFKRVRVAAKDTLNTGDRILLPQSVKVKQTPT----HSHLTPQQINFIRTL 140

Query: 898  ELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILV 719
             +YKD AI+V+NKPPGMPVQGG+ I+RSLD +AA  L Y + +PPRLVHRLDRD SGILV
Sbjct: 141  VIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILV 200

Query: 718  MGRTQLSTTVLHSVFREKTIGAFNDVLGGKNILQKRYLALVIGSPRRRQGSISVPLMKVV 539
            MGRT  STTVLHS+FREKT  A +D+   K ILQ+RY ALV+G PRR +G ++  L KVV
Sbjct: 201  MGRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVV 260

Query: 538  FDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELSPLTGRKHQLRVHCAEVL 359
             D+G+S+RIT+ D S  +  QHA+T+YRVIASS  GYTWLEL+PLTGRKHQLRVHCAEVL
Sbjct: 261  VDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVL 320

Query: 358  RTPIVGDYKYGRQAHRKLEQY-LESASDLKLGDMPSKADKXXXXXXXXXXXXXDEQFSLH 182
             TPIVGDYKYG QAHRK   + L +  D +  +     +K             +    LH
Sbjct: 321  GTPIVGDYKYGWQAHRKWGHFDLPNVEDSR--EELLNEEKLPFGLNLNKGSISENHPRLH 378

Query: 181  LHCKEMILPDISVVLQH-GNVADLDSARIGSIMLNAPLPPHMQRSWDLLN 35
            LHCK+M+LP+IS  LQ+  + +  D + +  + L A LPP+MQRSWD+ N
Sbjct: 379  LHCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 428