BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00025171
         (418 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...    65   7e-09
gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...    65   7e-09
gb|ELU04758.1| hypothetical protein CAPTEDRAFT_91083 [Capitella ...    57   3e-06

>gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 1846

 Score = 65.1 bits (157), Expect(2) = 7e-09
 Identities = 45/130 (34%), Positives = 67/130 (51%)
 Frame = +2

Query: 29   SYIISRIQPFXXXXXXXXXXXXXYLTWVQPYFPWLQPYFPYL*S*FSWI*PYEPCIFSHQ 208
            SYI   IQP+              +T +QPY   LQP    L   F+ + P    +  + 
Sbjct: 1636 SYIALIIQPYVAWLQPDVTELQPDITELQPYVTELQPDITELQPYFTELLPDVTELQPYF 1695

Query: 209  SILFTNFPFLQPNIS*L*PNISKLQSYFP*L*PNFPSIQPYFSCLQPNVSGLQPHFSLLQ 388
            + L  +   LQP  + L P++++LQ YF  L P+   +QPYF+ L P+V+ LQP+F+ L 
Sbjct: 1696 TELLPDVTELQPYFTELLPDVTELQPYFTKLLPDVTELQPYFTELLPDVTELQPYFTELL 1755

Query: 389  PHLAFLQPDL 418
            P +  LQP L
Sbjct: 1756 PDVTELQPYL 1765



 Score = 20.4 bits (41), Expect(2) = 7e-09
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 3    PYVGGVAF 26
            PYVGG+AF
Sbjct: 1594 PYVGGMAF 1601



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 42/125 (33%), Positives = 63/125 (50%)
 Frame = +2

Query: 38   ISRIQPFXXXXXXXXXXXXXYLTWVQPYFPWLQPYFPYL*S*FSWI*PYEPCIFSHQSIL 217
            I+ +QP+             Y T + P    LQPYF  L    + + PY    F+    L
Sbjct: 1660 ITELQPYVTELQPDITELQPYFTELLPDVTELQPYFTELLPDVTELQPY----FTE---L 1712

Query: 218  FTNFPFLQPNIS*L*PNISKLQSYFP*L*PNFPSIQPYFSCLQPNVSGLQPHFSLLQPHL 397
              +   LQP  + L P++++LQ YF  L P+   +QPYF+ L P+V+ LQP+ + L P +
Sbjct: 1713 LPDVTELQPYFTKLLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQPYLTELLPEV 1772

Query: 398  AFLQP 412
              LQP
Sbjct: 1773 TELQP 1777


>gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1784

 Score = 65.1 bits (157), Expect(2) = 7e-09
 Identities = 44/130 (33%), Positives = 67/130 (51%)
 Frame = +2

Query: 29   SYIISRIQPFXXXXXXXXXXXXXYLTWVQPYFPWLQPYFPYL*S*FSWI*PYEPCIFSHQ 208
            SYI   IQP+              +T +QPYF  L P    L   F+ + P    +  + 
Sbjct: 1581 SYIALIIQPYVAWLQPDITELQPDITELQPYFTELLPNVTELQPYFTELLPDVTELQPYF 1640

Query: 209  SILFTNFPFLQPNIS*L*PNISKLQSYFP*L*PNFPSIQPYFSCLQPNVSGLQPHFSLLQ 388
            + L  +   LQP  + L P++++LQ YF  L P+   +QPYF+ L P+V+GL P  + LQ
Sbjct: 1641 TELLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTKLLPDVTGLLPDVTELQ 1700

Query: 389  PHLAFLQPDL 418
            P+L  L P++
Sbjct: 1701 PYLTELLPEV 1710



 Score = 20.4 bits (41), Expect(2) = 7e-09
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 3    PYVGGVAF 26
            PYVGG+AF
Sbjct: 1539 PYVGGMAF 1546


>gb|ELU04758.1| hypothetical protein CAPTEDRAFT_91083 [Capitella teleta]
          Length = 120

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 36/97 (37%), Positives = 50/97 (51%)
 Frame = +2

Query: 116 PYFPWLQPYFPYL*S*FSWI*PYEPCIFSHQSILFTNFPFLQPNIS*L*PNISKLQSYFP 295
           P+   L P+   L S  S + P+  C+ SH S L  +   L P +S L P+ S L S+  
Sbjct: 2   PHASCLMPHASCLMSHVSCLMPHVSCLMSHVSCLMPHDSCLMPLVSCLMPHDSCLLSHVS 61

Query: 296 *L*PNFPSIQPYFSCLQPNVSGLQPHFSLLQPHLAFL 406
            L P+   + P+ SCL P+ S L PH S L PH + L
Sbjct: 62  WLMPHVSCLMPHASCLIPHASCLMPHASCLMPHASCL 98