BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00018518
         (2348 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus...  1278   0.0  
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise...  1191   0.0  
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1108   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1104   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1103   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1088   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1080   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1070   0.0  
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...  1061   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1057   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...  1056   0.0  
ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theob...  1045   0.0  
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...  1045   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1040   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1028   0.0  
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun...  1008   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1007   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1006   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1002   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...   992   0.0  

>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
          Length = 1211

 Score = 1278 bits (3307), Expect = 0.0
 Identities = 617/801 (77%), Positives = 703/801 (87%), Gaps = 19/801 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            LLPRHA LQNMTY+++IKVETHLQVYT+GL+RSDKF TGV+  VEKT+LNEYH EVNFGR
Sbjct: 149  LLPRHARLQNMTYAAKIKVETHLQVYTKGLNRSDKFTTGVENTVEKTLLNEYHNEVNFGR 208

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            LPVMVKSDLCWM + +++DCEFDQGGYFVIKGAEKTFIAQEQ+CLKRLWV K P+W+++Y
Sbjct: 209  LPVMVKSDLCWMKSLDKKDCEFDQGGYFVIKGAEKTFIAQEQLCLKRLWVTKIPSWTVSY 268

Query: 1988 RPVSKRKRVFIKMVPKVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLD 1809
            RPV++R RV+IK+VPK+EH++  +KILT YFYV EI VW++FFALG+PND+EVVKLI LD
Sbjct: 269  RPVARRNRVYIKLVPKMEHVIGADKILTVYFYVTEISVWVLFFALGIPNDKEVVKLIDLD 328

Query: 1808 PEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLFPH 1680
             E+ DIANIL+ SI+DADKK++GFR                       +E+LI  YLFPH
Sbjct: 329  IEDSDIANILIASIYDADKKYEGFRKEGNSSKHIKELMQNCKFPPTESIEDLIKNYLFPH 388

Query: 1679 LTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAERR 1500
            L +  QKA FL YMVKCLLEAY+GRRKV+NRDD RNK             RVHIKHAERR
Sbjct: 389  LKTPIQKACFLGYMVKCLLEAYKGRRKVENRDDFRNKRLELAGELLERELRVHIKHAERR 448

Query: 1499 MVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRT 1320
            M KAMQRDLY+DREVQSID YLDASI+TNGLSRAFSTGAW HPFKRMER +GVVA++RRT
Sbjct: 449  MTKAMQRDLYRDREVQSIDQYLDASIVTNGLSRAFSTGAWCHPFKRMERTSGVVATIRRT 508

Query: 1319 NPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVS 1140
            NPLQA+ D+R+TRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLG+VS
Sbjct: 509  NPLQAIADMRKTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGLVS 568

Query: 1139 TNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRRRR 963
            TN+L   NLLKKF + GME +VDDTS LL GKH+VFLDGDW+G+CKDSSSFV+KLRR+RR
Sbjct: 569  TNLLAQGNLLKKFQQCGMEKMVDDTSNLLGGKHKVFLDGDWIGICKDSSSFVSKLRRKRR 628

Query: 962  KLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKGHFSFQSLLSSGIVE 783
            ++E+P+Q+EIKRD+H+GEVRIF D+GRILRPL VVQNLKKIKDLKG+FSFQSLL +GI+E
Sbjct: 629  RMEIPHQMEIKRDQHNGEVRIFNDSGRILRPLLVVQNLKKIKDLKGNFSFQSLLDNGIIE 688

Query: 782  FIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRV 603
             IG EEEEDCQTAWG+ YLFTAELENPPVKY+HCE DSSFLLGLS GI+PF NHDHARRV
Sbjct: 689  LIGAEEEEDCQTAWGVRYLFTAELENPPVKYTHCELDSSFLLGLSCGIVPFTNHDHARRV 748

Query: 602  LYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVP 423
            LYQS KHSQQAIGYSTTN  IRVDTNSH LYYPQR LFRT+LSD LG+S +SDH+KGM+P
Sbjct: 749  LYQSEKHSQQAIGYSTTNSIIRVDTNSHSLYYPQRPLFRTVLSDSLGRSTFSDHYKGMIP 808

Query: 422  RPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEG-AGKR 246
            RP+F+NGQCAIVA+NVHLGYNQEDSLVMNR+SLERGMFRTEHVRS+KA+VENSE   GK+
Sbjct: 809  RPEFYNGQCAIVAINVHLGYNQEDSLVMNRSSLERGMFRTEHVRSFKADVENSEAVGGKK 868

Query: 245  LKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTER 66
            +K DE+VSFGK+QSKIGRVDSL+DDGFPYIGANLQTGDIVIGKHAA GVDHSIKLKHTE+
Sbjct: 869  VKMDEMVSFGKMQSKIGRVDSLEDDGFPYIGANLQTGDIVIGKHAATGVDHSIKLKHTEK 928

Query: 65   GMVQKVVLSANDEGKNFAVVS 3
            GMV KVVLSANDEGKNFAVVS
Sbjct: 929  GMVHKVVLSANDEGKNFAVVS 949


>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
          Length = 1205

 Score = 1191 bits (3080), Expect = 0.0
 Identities = 583/802 (72%), Positives = 675/802 (84%), Gaps = 20/802 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQV-YTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFG 2172
            L P+HA LQNMTY++RIKVETHL+V YTEGL RS+KF TGV T V++T L     E+NFG
Sbjct: 144  LHPKHARLQNMTYAARIKVETHLEVVYTEGLVRSEKFTTGVSTHVQRTTLKSLSLEINFG 203

Query: 2171 RLPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIA 1992
            +LPVMV SDLCW+ +  ++DCEFDQGGYF+IKGAEKTFIAQEQICLKRLWV+K+PTW+I+
Sbjct: 204  KLPVMVNSDLCWLKSTGKKDCEFDQGGYFIIKGAEKTFIAQEQICLKRLWVSKDPTWTIS 263

Query: 1991 YRPVSKRKRVFIKMVPKVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGL 1812
            YRP++KR+R+++K+VPKVE    GEKILT YF   E+P+W++FFALG  ND+EVVK+I +
Sbjct: 264  YRPITKRRRIYLKLVPKVESAPVGEKILTVYFSFVEMPIWILFFALGARNDKEVVKMIDM 323

Query: 1811 DPEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLFP 1683
            D E+  IANIL+ SIHDAD K++GFR                       VEE    +LFP
Sbjct: 324  DIEDSAIANILLASIHDADSKYEGFRKNGSAIKHLKDLMQEGKYPPTESVEEYFQIHLFP 383

Query: 1682 HLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAER 1503
            HL S  QKA FLAYMVKCLLE Y+GRRKVDNRDD+RNK             R+ IKHAER
Sbjct: 384  HLKSSVQKACFLAYMVKCLLECYKGRRKVDNRDDLRNKRLELAGELLERELRIQIKHAER 443

Query: 1502 RMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRR 1323
            RM+++MQRDL K R++Q+IDHYLDASIITNGLSRAFSTGAW HP+KRMERI+G+VA+LRR
Sbjct: 444  RMMRSMQRDLDKGRDLQTIDHYLDASIITNGLSRAFSTGAWSHPYKRMERISGIVATLRR 503

Query: 1322 TNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIV 1143
            TNPLQA+ D+R+TRQQVSYTGRVGDARYPHPSHWGK+CFLSTPDGENCGLVKNLASLG+V
Sbjct: 504  TNPLQAIADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLV 563

Query: 1142 STNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRRR 966
            ST +L+   LLKKF E GME L DDTS LL+GKH++FLDGD VGVC+DSSSFV+ LRRRR
Sbjct: 564  STEVLDQEGLLKKFRECGMEQLADDTSSLLDGKHKIFLDGDLVGVCRDSSSFVSMLRRRR 623

Query: 965  RKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKGHFSFQSLLSSGIV 786
            +K EVP+Q+EIK D+ +GEVR+FADAGRILRPL VV+NL+KI DLK H  FQSLL  GIV
Sbjct: 624  QKNEVPHQVEIKMDQSNGEVRVFADAGRILRPLLVVRNLRKINDLKSHVFFQSLLDVGIV 683

Query: 785  EFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHARR 606
            E IGPEEEEDCQTAWG  YLF AELENPPVKYSHCE DSSFLLGLS GIIPFANHDHARR
Sbjct: 684  ELIGPEEEEDCQTAWGTKYLFMAELENPPVKYSHCELDSSFLLGLSCGIIPFANHDHARR 743

Query: 605  VLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMV 426
            VLYQS KHSQQAIG+STT+P+IRVDTNSHQLYYPQ+ LFRT+LSDCLGK   S   KG++
Sbjct: 744  VLYQSEKHSQQAIGFSTTSPNIRVDTNSHQLYYPQKPLFRTVLSDCLGKLTDSCRRKGII 803

Query: 425  PRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAG-K 249
            P P FFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+EHVRSYK++V+NSE A  K
Sbjct: 804  PLPPFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKSDVDNSEAAPVK 863

Query: 248  RLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTE 69
            + KAD+++SFGK+QSKIGRVDSLD+DGFPY+GANLQTGDIVIGK  A GVDHSIKLKHTE
Sbjct: 864  KFKADDLISFGKVQSKIGRVDSLDEDGFPYVGANLQTGDIVIGKCTATGVDHSIKLKHTE 923

Query: 68   RGMVQKVVLSANDEGKNFAVVS 3
            RGMVQKV+LSA+DEG+N+AVVS
Sbjct: 924  RGMVQKVILSADDEGRNYAVVS 945


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1108 bits (2866), Expect = 0.0
 Identities = 550/803 (68%), Positives = 649/803 (80%), Gaps = 21/803 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            LLPRHA LQNMTYS+RI VETH+QVYT+ L RSDKFKTGVD  V+K    E   +V  GR
Sbjct: 159  LLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGR 218

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMV S+LCWM+  ++ DCEFD GGYF++KGAEKTFIAQEQ+CLKRLWV+  PTW + Y
Sbjct: 219  IPVMVNSELCWMNGVDKLDCEFDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGY 278

Query: 1988 RPVSKRKRVFIKMVP--KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            RP  KRKRV+IK+    K+EH+  GEK L+ Y  +AE+P+W++FFALGV +DREVV LI 
Sbjct: 279  RPGEKRKRVYIKLTETLKLEHIKGGEKALSVYI-LAEMPIWVLFFALGVSSDREVVNLID 337

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLF 1686
            +D E+  I NIL+ SIH+ADK  + FR                       VEE I+ YLF
Sbjct: 338  VDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLF 397

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P+L+   QKA FL YMVKCLL ++ GRRKVDNRDD RNK             R HIKHAE
Sbjct: 398  PNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAE 457

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            RRMVKAMQRDLY DR+VQ I+HYLDASIITNGLSRAFSTG W HP+KRMER++GVVA+LR
Sbjct: 458  RRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLR 517

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            RTNPLQ   D+R++RQQV+YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+G+
Sbjct: 518  RTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGL 577

Query: 1145 VSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRR 969
            VST IL+    L+     GM+ LVDD +  L+GK +V LDG+WVGVC+DS+ FV+KLRR+
Sbjct: 578  VSTIILKP--FLETLFRCGMQKLVDDCATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRK 635

Query: 968  RRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSG 792
            RR+ EVP+Q+E+KRD+  GEVRIF+D+GRILRPL VV NLKKIK LKG  + FQSLL +G
Sbjct: 636  RRRNEVPHQVEVKRDELQGEVRIFSDSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNG 695

Query: 791  IVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHA 612
            I+EFIGPEEEEDC+TAWG++Y+  A+ ENPP KY+HCE D SFLLGLS GIIPFANHDHA
Sbjct: 696  IIEFIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHA 755

Query: 611  RRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKG 432
            RRVLYQS KHSQQAIG+ST NP+ RVDTN+HQLYYPQR LFRTML+D LGK + + + KG
Sbjct: 756  RRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKG 815

Query: 431  MVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAG 252
            M+PRP++FNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+EHVRSYKAEV+N E   
Sbjct: 816  MLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMA 875

Query: 251  KRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHT 72
            K+LK ++ V+FGK QSKIGRVDSLDDDGFP+IGANLQ+GDI+IGK A +G DHS+KLKHT
Sbjct: 876  KKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHT 935

Query: 71   ERGMVQKVVLSANDEGKNFAVVS 3
            ERGMVQKV+LSANDEGKNFAVVS
Sbjct: 936  ERGMVQKVLLSANDEGKNFAVVS 958


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1104 bits (2856), Expect = 0.0
 Identities = 549/803 (68%), Positives = 647/803 (80%), Gaps = 21/803 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            LLPRHA LQNMTYS+RI VETH+QVYT+ L RSDKFKTGVD  V+K    E   +V  GR
Sbjct: 159  LLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGR 218

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMV S+LCWM+  ++ DCEFD GGYF++KGAEKTFIAQEQ+CLKRLWV+  PTW + Y
Sbjct: 219  IPVMVNSELCWMNGVDKLDCEFDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGY 278

Query: 1988 RPVSKRKRVFIKMVP--KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            RP  KRKRV+IK+    K+EH+  GEK L+ Y  +AE+P+W++FFALGV +DREVV LI 
Sbjct: 279  RPGEKRKRVYIKLTETLKLEHIKGGEKALSVYI-LAEMPIWVLFFALGVSSDREVVNLID 337

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLF 1686
            +D E+  I NIL+ SIH+ADK  + FR                       VEE I+ YLF
Sbjct: 338  VDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLF 397

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P+L+   QKA FL YMVKCLL ++ GRRKVDNRDD RNK             R HIKHAE
Sbjct: 398  PNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAE 457

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            RRMVKAMQRDLY DR+VQ I+HYLDASIITNGLSRAFSTG W HP+KRMER++GVVA+LR
Sbjct: 458  RRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLR 517

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            RTNPLQ   D+R++RQQV+YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+G+
Sbjct: 518  RTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGL 577

Query: 1145 VSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRR 969
            VST IL+    L+     GM+ LVDD S  L+GK +V LDG+WVGVC+DS+ FV+KLRR+
Sbjct: 578  VSTIILKP--FLETLFRCGMQKLVDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRK 635

Query: 968  RRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSG 792
            RR+ EVP+Q+E+KRD+  GEVRIF+D GRILRPL VV NLKKIK LKG  + FQSLL +G
Sbjct: 636  RRRNEVPHQVEVKRDELQGEVRIFSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNG 695

Query: 791  IVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHA 612
            I+E IGPEEEEDC+TAWG++Y+  A+ ENPP KY+HCE D SFLLGLS GIIPFANHDHA
Sbjct: 696  IIELIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHA 755

Query: 611  RRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKG 432
            RRVLYQS KHSQQAIG+ST NP+ RVDTN+HQLYYPQR LFRTML+D LGK + + + KG
Sbjct: 756  RRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKG 815

Query: 431  MVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAG 252
            M+PRP++FNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+EHVRSYKAEV+N E   
Sbjct: 816  MLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMA 875

Query: 251  KRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHT 72
            K+LK ++ V+FGK QSKIGRVDSLDDDGFP+IGANLQ+GDI+IGK + +G DHS+KLKHT
Sbjct: 876  KKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHT 935

Query: 71   ERGMVQKVVLSANDEGKNFAVVS 3
            ERGMVQKV+LSANDEGKNFAVVS
Sbjct: 936  ERGMVQKVLLSANDEGKNFAVVS 958


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1103 bits (2852), Expect = 0.0
 Identities = 549/803 (68%), Positives = 646/803 (80%), Gaps = 21/803 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            LLPRHA LQNMTYS+RI VETH+QVYT+ L RSDKFKTGVD  V+K    E   +V  GR
Sbjct: 153  LLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGR 212

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMV S+LCWM+  ++ DCEFD GGYF+ KGAEKTFIAQEQ+CLKRLWV+  PTW + Y
Sbjct: 213  IPVMVNSELCWMNGVDKLDCEFDHGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGY 272

Query: 1988 RPVSKRKRVFIKMVP--KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            RP  KRKRV+IK+    K+EH+  GEK L+ Y  +AE+P+W++FFALGV +DREVV LI 
Sbjct: 273  RPGEKRKRVYIKLTETLKLEHIKGGEKALSVYI-LAEMPIWVLFFALGVSSDREVVNLID 331

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLF 1686
            +D E+  I NIL+ SIH+ADK  + FR                       VEE I+ YLF
Sbjct: 332  VDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLF 391

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P+L+   QKA FL YMVKCLL ++ GRRKVDNRDD RNK             R HIKHAE
Sbjct: 392  PNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAE 451

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            RRMVKAMQRDLY DR+VQ I+HYLDASIITNGLSRAFSTG W HP+KRMER++GVVA+LR
Sbjct: 452  RRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLR 511

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            RTNPLQ   D+R++RQQV+YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+G+
Sbjct: 512  RTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGL 571

Query: 1145 VSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRR 969
            VST IL+    L+     GM+ LVDD S  L+GK +V LDG+WVGVC+DS+ FV+KLRR+
Sbjct: 572  VSTIILKP--FLETLFRCGMQKLVDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRK 629

Query: 968  RRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSG 792
            RR+ EVP+Q+E+KRD+  GEVRIF+D GRILRPL VV NLKKIK LKG  + FQSLL +G
Sbjct: 630  RRRNEVPHQVEVKRDELQGEVRIFSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNG 689

Query: 791  IVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHA 612
            I+E IGPEEEEDC+TAWG++Y+  A+ ENPP KY+HCE D SFLLGLS GIIPFANHDHA
Sbjct: 690  IIELIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHA 749

Query: 611  RRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKG 432
            RRVLYQS KHSQQAIG+ST NP+ RVDTN+HQLYYPQR LFRTML+D LGK + + + KG
Sbjct: 750  RRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKG 809

Query: 431  MVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAG 252
            M+PRP++FNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+EHVRSYKAEV+N E   
Sbjct: 810  MLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMA 869

Query: 251  KRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHT 72
            K+LK ++ V+FGK QSKIGRVDSLDDDGFP+IGANLQ+GDI+IGK + +G DHS+KLKHT
Sbjct: 870  KKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHT 929

Query: 71   ERGMVQKVVLSANDEGKNFAVVS 3
            ERGMVQKV+LSANDEGKNFAVVS
Sbjct: 930  ERGMVQKVLLSANDEGKNFAVVS 952


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1088 bits (2814), Expect = 0.0
 Identities = 545/806 (67%), Positives = 643/806 (79%), Gaps = 25/806 (3%)
 Frame = -1

Query: 2345 LPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDT-VVEKTILNEYHTEVNFGR 2169
            LPRHA LQNMTYSSR+K + H QVYT+ L RSDK+KTG D   VEK ++ E + ++  GR
Sbjct: 136  LPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGR 195

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMVKS+LCWM+  E  DCE+D GGYF+IKGAEKTFIAQEQICLKRLWV+  PTW +AY
Sbjct: 196  IPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAY 255

Query: 1988 RPVSKRKRVFIKMVP-KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGL 1812
            RP+ KRKRV++K+ P K E+   GEK+LT YF   EIP+W++FFALG  +D+EVV LI  
Sbjct: 256  RPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDF 315

Query: 1811 DPEEDDIANILMPSIHDADKKFD---------------------GFRXXXXXXVEELIST 1695
            + ++  I+NIL+ SIH+AD++ +                       +      ++E IS 
Sbjct: 316  NIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISK 375

Query: 1694 YLFPHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIK 1515
            YLFP+ +   QKA FL YMVKCLL+AY GRRK DNRDD RNK             RVHI+
Sbjct: 376  YLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIR 435

Query: 1514 HAERRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVA 1335
            HAERRMVKAMQR+LY DR+++ I++YLDASIITNGLSRAFSTG W HPFKRMERI+GVVA
Sbjct: 436  HAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVA 495

Query: 1334 SLRRTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAS 1155
            +LRRTNPLQ   D+R+TRQQV YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA 
Sbjct: 496  TLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAI 555

Query: 1154 LGIVSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKL 978
             G+VST +L+   L+ K  + GME LVDDTS  L+GK++VFLDGDWVGVC+D  SFV +L
Sbjct: 556  TGLVSTEVLDP--LVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVEL 613

Query: 977  RRRRRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKGH-FSFQSLL 801
            R +RR  E+P Q+EIKRD+  GEVRIF+DAGRILRPL VV+NLKK+K  KG  F+FQSLL
Sbjct: 614  RTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLL 673

Query: 800  SSGIVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANH 621
              GIVE IG EEEEDC TAWGI YL     ++PPVKY+HCE D SFLLGLS GIIP+ANH
Sbjct: 674  DKGIVELIGAEEEEDCSTAWGIKYLLKGH-DDPPVKYTHCELDMSFLLGLSCGIIPYANH 732

Query: 620  DHARRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDH 441
            DHARRVLYQS KHSQQAIG+STTNP+IRVDT SHQLYYPQR LFRTM+SDCLGK  YS+ 
Sbjct: 733  DHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEG 792

Query: 440  HKGMVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSE 261
            HKG+VPRP++FNGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYK+EV+N+E
Sbjct: 793  HKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNE 852

Query: 260  GAGKRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKL 81
               K+ K+++ V FGK+QSKIGRVDSLDDDGFP+IGANLQ GDIVIG+ A +GVDHSIKL
Sbjct: 853  SLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKL 912

Query: 80   KHTERGMVQKVVLSANDEGKNFAVVS 3
            KHTERGMVQKVV+SAND+GKNFAVVS
Sbjct: 913  KHTERGMVQKVVVSANDDGKNFAVVS 938


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1080 bits (2792), Expect = 0.0
 Identities = 536/807 (66%), Positives = 638/807 (79%), Gaps = 25/807 (3%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            L PRHA LQNMTYS+RI VETH+QV+T+ L RSDKFKTGV+  V+K  + E   +V  GR
Sbjct: 157  LWPRHARLQNMTYSARIIVETHVQVFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGR 216

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMV S+LCWMS  +  DC+FD GGYF++KGAEK FIAQEQICLKRLWV+   TW +AY
Sbjct: 217  IPVMVNSELCWMSGADRPDCDFDHGGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAY 276

Query: 1988 RPVSKRKRVFIKMVP--KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            R   KR RV++K+    K EH+    K L+ YF +AE+P+W++FFALGV +DRE+V LI 
Sbjct: 277  RSGEKRNRVYLKLTETLKHEHIKGEAKALSVYF-LAEMPIWVLFFALGVSSDREIVDLID 335

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLF 1686
            +D ++ +I NIL+ SIHDADK  + FR                       VEE I  YLF
Sbjct: 336  VDIKDTNIINILVASIHDADKNCEDFRKGKKALAYVDRLIKSCKFPPQESVEECIKEYLF 395

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P+L+   QKA FL YMVKCLL +Y GRRKVDNRDD RNK             R HIKHAE
Sbjct: 396  PNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLERELRAHIKHAE 455

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            RRMVKA+QRDL  DR+VQ ++HYLDASIITNGLSRAFSTG W HP+KRMER++GVVA+LR
Sbjct: 456  RRMVKALQRDLCGDRQVQPLEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLR 515

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            RTNPLQ   DLR+TRQQV+YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAS+G+
Sbjct: 516  RTNPLQMTADLRKTRQQVTYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGL 575

Query: 1145 VSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRR 969
            VST +L+   LL+     GM+ LVDD++  L+GK +V LDGDWVGVC+DS+ FV+KLRR+
Sbjct: 576  VSTTVLKP--LLETLFRCGMQKLVDDSATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRK 633

Query: 968  RRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLK-----GHFSFQSL 804
            RR+ EVP+Q+E+KRD+   EVRIF+DAGRI+RPL VV NLK IK LK     G + FQ+L
Sbjct: 634  RRRNEVPHQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNIKSLKDGMKGGDYGFQTL 693

Query: 803  LSSGIVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFAN 624
            L  GI+E IGPEEEEDC+TAWG++YL  A+ ENPPV Y+HCE D SFLLGLS G+IPFAN
Sbjct: 694  LDKGIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFAN 753

Query: 623  HDHARRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSD 444
            HDHARRVLYQS KHSQQAIG+ST NP+ RVDTN+HQLYYPQR LF TMLSD LGK +   
Sbjct: 754  HDHARRVLYQSEKHSQQAIGFSTVNPNARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCGR 813

Query: 443  HHKGMVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENS 264
            H KGM+ RP+++NGQCAIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHVRSYKAEV+N 
Sbjct: 814  HQKGMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNK 873

Query: 263  EGAGKRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIK 84
            E  GK+ K ++ V+FGK QSKIGRVDSLDDDGFP+IGANLQ+GDI+IGK+A +G DHS+K
Sbjct: 874  EAMGKKSKVEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKYAESGADHSVK 933

Query: 83   LKHTERGMVQKVVLSANDEGKNFAVVS 3
            +KHTERGMVQKV+LSAND+GKNFAVVS
Sbjct: 934  MKHTERGMVQKVLLSANDDGKNFAVVS 960


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1070 bits (2767), Expect = 0.0
 Identities = 531/804 (66%), Positives = 634/804 (78%), Gaps = 24/804 (2%)
 Frame = -1

Query: 2342 PRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGRLP 2163
            PRHA LQNMTYS+RI VETH+QV+T+ L RSDKFKTGV+  V+K  + E   +V  GR+P
Sbjct: 159  PRHARLQNMTYSARIIVETHVQVFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIP 218

Query: 2162 VMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAYRP 1983
            VMV S+LCWMS  +  DCEFD GGYF++KGAEK FIAQEQ+CLKRLWV+   TW +AYR 
Sbjct: 219  VMVNSELCWMSGADRLDCEFDHGGYFIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRS 278

Query: 1982 VSKRKRVFIKMVPKVEH-LVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGLDP 1806
              KR RV++K+   ++H  + GE    + +++AE+P+W++FFALGV +DREVV LI +D 
Sbjct: 279  GEKRNRVYLKLTETLKHEQIKGEAKSLSVYFLAEMPIWVLFFALGVSSDREVVDLIDVDI 338

Query: 1805 EEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLFPHL 1677
            +++ I NIL+ SIHDADK  + FR                       VEE I  YLFP+L
Sbjct: 339  KDNKIINILVASIHDADKNCEDFRKGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNL 398

Query: 1676 TSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAERRM 1497
            +   QKA FL YMVKCLL +Y GRRKVDNRDD RNK             RVHIKHAERRM
Sbjct: 399  SGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRM 458

Query: 1496 VKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRRTN 1317
            VKA+QRDL  DR+V  I+HYLDASIITNGLSRAFSTG W HP+KRMER++GVVA+LRRTN
Sbjct: 459  VKALQRDLCGDRQVHPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTN 518

Query: 1316 PLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIVST 1137
            PLQ   DLR+TRQQV+YTG+VGDARYP+PSHWGKVCFLSTPDGENCGLVKNLAS+G+VST
Sbjct: 519  PLQMTADLRKTRQQVTYTGKVGDARYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVST 578

Query: 1136 NILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRRRRK 960
             +L    LL+     GM+ LVDD +  L+GK +V LDGDWVGVC+DS+ FV+KLRR+RR+
Sbjct: 579  TVL--MPLLETLFRCGMQKLVDDCATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRR 636

Query: 959  LEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-----HFSFQSLLSS 795
             EVP+Q+E+KRD+   EVRIF+DAGRI+RPL VV NLK IK L G      + FQ+LL  
Sbjct: 637  NEVPHQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNIKALNGGVKGGDYGFQTLLDK 696

Query: 794  GIVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDH 615
            GI+E IGPEEEEDC+TAWG++YL  A+ ENPPV Y+HCE D SFLLGLS G+IPFANHDH
Sbjct: 697  GIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDH 756

Query: 614  ARRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHK 435
            ARRVLYQS KHSQQAIG+ST NP+IRVDTN+HQLYYPQR LF TMLSD LGK + + H +
Sbjct: 757  ARRVLYQSEKHSQQAIGFSTVNPNIRVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQR 816

Query: 434  GMVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGA 255
            GM+ RP+++NGQCAIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHVRSYKAEV+N E  
Sbjct: 817  GMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNMEAT 876

Query: 254  GKRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKH 75
            GK+ KA++ V+FGK QSKIGRVD LDDDG PYIGANLQ+GDI+IGK A +G DHS+K+KH
Sbjct: 877  GKKSKAEDSVNFGKTQSKIGRVDCLDDDGLPYIGANLQSGDIIIGKFAESGADHSVKMKH 936

Query: 74   TERGMVQKVVLSANDEGKNFAVVS 3
            TE+GMVQKV+LSANDEGKNFAVVS
Sbjct: 937  TEKGMVQKVLLSANDEGKNFAVVS 960


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score = 1061 bits (2744), Expect = 0.0
 Identities = 538/834 (64%), Positives = 638/834 (76%), Gaps = 52/834 (6%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            L PRHA LQNMTYS+RI VETH  V+T+ L RSDKFKTGV+  V+K  + E   +V  GR
Sbjct: 161  LWPRHARLQNMTYSARIIVETH--VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGR 218

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMV S+LCWMS  +  DCEFD GGYF++KGAEK FIAQEQICLKRLWV+   TW +AY
Sbjct: 219  IPVMVNSELCWMSGADRPDCEFDHGGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAY 278

Query: 1988 RPVSKRKRVFIKMVP--KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            R   KR RV++K+    K EH+    K L+ YF+ AE+P+W++FFALGV +DREVV LI 
Sbjct: 279  RSGEKRNRVYLKLTETLKHEHIKGEAKALSVYFF-AEMPIWVLFFALGVSSDREVVDLID 337

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLF 1686
            +D ++ +I NIL+ SIHDADK  + FR                       VEE I  YLF
Sbjct: 338  VDIKDTNIINILVASIHDADKNCEDFRKGKKALAYVDRLVKSCKFPPQESVEECIKEYLF 397

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P+L+   QKA FL YMVKCLL +Y GRRKVDNRDD RNK             RVH+KHAE
Sbjct: 398  PNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHVKHAE 457

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            RRMVKA+QRDL  DR+VQ I+HYLDASIITNGLSRAFSTG W HP+KRMER++GVVA+LR
Sbjct: 458  RRMVKALQRDLCGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLR 517

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            RTNPLQ   DLR+TRQQV+YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAS+G+
Sbjct: 518  RTNPLQMTADLRKTRQQVTYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGL 577

Query: 1145 VSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRR 969
            VST +L+   LL+     GM+ LVDD++  L+GK +V LDGDWVGVC+DS+ FV+KLRR+
Sbjct: 578  VSTTVLKP--LLETLFRCGMQKLVDDSATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRQ 635

Query: 968  RRKLEVPYQ---------------------------IEIKRDKHHGEVRIFADAGRILRP 870
            RR+ EVP+Q                           +E+KRD+   EVRIF+DAGRI+RP
Sbjct: 636  RRRNEVPHQLAHTLAIPPGICYLLPTHVPVTLTEAQVEVKRDEQQDEVRIFSDAGRIMRP 695

Query: 869  LFVVQNLKKIKDLK-----GHFSFQSLLSSGIVEFIGPEEEEDCQTAWGIDYLFTAELEN 705
            L VV NLK IK LK     G + FQ+LL  GI+E IGPEEEEDC+TAWG++YL  A+ EN
Sbjct: 696  LLVVSNLKNIKALKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLKADKEN 755

Query: 704  PPVKYSHCEFDSSFLLGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYSTTNPSIRVDTN 525
            PPV Y+HCE D SFLLGLS G+IPFANHDHARRVLYQS KHSQQAIG+ST NP+ RVDTN
Sbjct: 756  PPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNARVDTN 815

Query: 524  SHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVNVHLGYNQEDSL 345
            +HQLYYPQR LF TMLSD LGK + + H KGM+ RP+++NGQCAIVAVNVHLGYNQEDS+
Sbjct: 816  THQLYYPQRPLFGTMLSDSLGKPKCARHQKGMLSRPEYYNGQCAIVAVNVHLGYNQEDSV 875

Query: 344  VMNRASLERGMFRTEHVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKIGRVDSLDDDGF 165
            VMNRASLERGMFR+EHVRSYKAEV+N E  GK+ K ++ V+FGK QSKIGRVDSLDDDGF
Sbjct: 876  VMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGRVDSLDDDGF 935

Query: 164  PYIGANLQTGDIVIGKHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVS 3
            P+IGANLQ+GDI+IGK+A +G DHS+K+KHTERGMVQKV+LSAND+GKNFAVVS
Sbjct: 936  PFIGANLQSGDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKNFAVVS 989


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1057 bits (2734), Expect = 0.0
 Identities = 535/806 (66%), Positives = 632/806 (78%), Gaps = 25/806 (3%)
 Frame = -1

Query: 2345 LPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDT-VVEKTILNEYHTEVNFGR 2169
            LPRHA LQNMTYSSR+K + H QVYT+ L RSDK+KTG D   VEK ++ E + ++  GR
Sbjct: 172  LPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGR 231

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMVKS+LCWM+  E  DCE+D GGYF+IKGAEKTFIAQEQICLKRLWV+  PTW +AY
Sbjct: 232  IPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAY 291

Query: 1988 RPVSKRKRVFIKMVP-KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIGL 1812
            RP+ KRKRV++K+ P K E+   GEK+LT YF   EIP+W++FFALG  +D+EVV LI  
Sbjct: 292  RPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDF 351

Query: 1811 DPEEDDIANILMPSIHDADKKFD---------------------GFRXXXXXXVEELIST 1695
            + ++  I+NIL+ SIH+AD++ +                       +      ++E IS 
Sbjct: 352  NIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISK 411

Query: 1694 YLFPHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIK 1515
            YLFP+ +   QKA FL YMVKCLL+AY GRRK DNRDD RNK             RVHI+
Sbjct: 412  YLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIR 471

Query: 1514 HAERRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVA 1335
            HAERRMVKAMQR+LY DR+++ I++YLDASIITNGLSRAFSTG W HPFKRMERI+GVVA
Sbjct: 472  HAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVA 531

Query: 1334 SLRRTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAS 1155
            +LRRTNPLQ   D+R+TRQQV YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA 
Sbjct: 532  TLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAI 591

Query: 1154 LGIVSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKL 978
             G+VST +L+   L+ K  + GME LVDDTS  L+GK++VFLDGDWVGVC+D  SFV +L
Sbjct: 592  TGLVSTEVLD--PLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVEL 649

Query: 977  RRRRRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLL 801
            R +RR  E+P Q+EIKRD+  GEVRIF+DAGRILRPL VV+NLKK+K  KG  F+FQSLL
Sbjct: 650  RTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLL 709

Query: 800  SSGIVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANH 621
              GIVE IG EEEEDC TAWGI YL     ++PPVKY+HCE D SFLLGLS GIIP+ANH
Sbjct: 710  DKGIVELIGAEEEEDCSTAWGIKYLLKGH-DDPPVKYTHCELDMSFLLGLSCGIIPYANH 768

Query: 620  DHARRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDH 441
            DHARRVLYQS KHSQQAIG+STTNP+IRVDT SHQLYYPQR LFRTM+SD          
Sbjct: 769  DHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISD---------- 818

Query: 440  HKGMVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSE 261
                +PRP++FNGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYK+EV+N+E
Sbjct: 819  ----LPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNE 874

Query: 260  GAGKRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKL 81
               K+ K+++ V FGK+QSKIGRVDSLDDDGFP+IGANLQ GDIVIG+ A +GVDHSIKL
Sbjct: 875  SLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKL 934

Query: 80   KHTERGMVQKVVLSANDEGKNFAVVS 3
            KHTERGMVQKVV+SAND+GKNFAVVS
Sbjct: 935  KHTERGMVQKVVVSANDDGKNFAVVS 960


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 1056 bits (2730), Expect = 0.0
 Identities = 522/759 (68%), Positives = 613/759 (80%), Gaps = 20/759 (2%)
 Frame = -1

Query: 2219 VEKTILNEYHTEVNFGRLPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQI 2040
            V+K  ++E + +V  GR+PVM+KSDLCWM+  E+ DC+FD GGYF+IKGAEKTFIAQEQI
Sbjct: 3    VDKDPISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQEQI 62

Query: 2039 CLKRLWVAKEPTWSIAYRPVSKRKRVFIKMVP-KVEHLVAGEKILTAYFYVAEIPVWLMF 1863
            CLKRLWV+  P+W++AYR VSKRKRV+IK+ P K EH+  GEK+L+ YF   E P+W++F
Sbjct: 63   CLKRLWVSNSPSWTVAYRDVSKRKRVYIKLEPPKREHIRGGEKVLSVYFSAVEFPIWILF 122

Query: 1862 FALGVPNDREVVKLIGLDPEEDDIANILMPSIHDADKKFDGFRXXXXXX----------- 1716
            FALG  +D+EVV LI  D E+  I N+L+ SI+DAD+   GFR                 
Sbjct: 123  FALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIENCK 182

Query: 1715 ------VEELISTYLFPHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXX 1554
                  +E  +S YLFP+L+   QKA FL YMVKCLL+AY GRRK+DNRDD RNK     
Sbjct: 183  FPPQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRLELA 242

Query: 1553 XXXXXXXXRVHIKHAERRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVH 1374
                    RVH+KHAERRMVKAMQRDLY +R + +I+HYLDASIITNGLSRAFSTGAW H
Sbjct: 243  GELLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAWSH 302

Query: 1373 PFKRMERIAGVVASLRRTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTP 1194
            P+K+MERI+GVVA+LRRTNPLQ + D+R+TRQQVSYTG+VGDARYPHPSHWGK+CFLSTP
Sbjct: 303  PYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLSTP 362

Query: 1193 DGENCGLVKNLASLGIVSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWV 1017
            DGENCGLVKNLA  G+VSTNI EH   L K  +SGME LVDDTS LL+GK +VFLDG+WV
Sbjct: 363  DGENCGLVKNLAITGLVSTNIEEH--FLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNWV 420

Query: 1016 GVCKDSSSFVAKLRRRRRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIK 837
            GVC DS SFVA LRR+RR+ EVP+Q+EIKRD+ H EVR+F+DAGRILRPL VV+NL KIK
Sbjct: 421  GVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKIK 480

Query: 836  DLKG-HFSFQSLLSSGIVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFL 660
              KG  +SFQSLL  G++EFIG EEEEDC+TAWGI+YLF        VKY+HCE D SFL
Sbjct: 481  ASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMSFL 540

Query: 659  LGLSTGIIPFANHDHARRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTM 480
            LGLS  IIPFANHDHARRVLYQS KHSQQA+G++TTNP+IRVDTN+HQLYYPQR LFRTM
Sbjct: 541  LGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRTM 600

Query: 479  LSDCLGKSRYSDHHKGMVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTE 300
            +SDCLGK  Y   H G+VPR ++FNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+E
Sbjct: 601  VSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 660

Query: 299  HVRSYKAEVENSEGAGKRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIG 120
            H+RSYKA+V+N E  GK+ K ++ V+FGK+QSKIGRVDSLDDDGFP+IGANLQ GDIV+G
Sbjct: 661  HIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIVVG 720

Query: 119  KHAAAGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVS 3
            + A +G DHSIKLKHTERGMVQKVVLSANDEGKNFAVVS
Sbjct: 721  RCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVS 759


>ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508782082|gb|EOY29338.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 1073

 Score = 1045 bits (2701), Expect = 0.0
 Identities = 525/803 (65%), Positives = 624/803 (77%), Gaps = 21/803 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            +LPRHA LQNMTYSSR+KV   LQVYT    +SDKFKTG +  VE+ ++ + + ++  GR
Sbjct: 124  MLPRHARLQNMTYSSRMKVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGR 183

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMV+SDLCWM+  E+ DC+FD GGYF+IKG EK FIAQEQI +KRLW++    W+IAY
Sbjct: 184  IPVMVRSDLCWMNEVEKADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAY 243

Query: 1988 RPVSKRKRVFIKMVP--KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            R   KR R+ I++V   KVE++  GEK+LT YF   EIPVW++FFALGV +D+EVV LI 
Sbjct: 244  RSEVKRNRLIIRLVENSKVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLID 303

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGF-----------------RXXXXXXVEELISTYLF 1686
             +  +  I NIL  SI +AD K   F                 R      +EE +STYLF
Sbjct: 304  YESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLF 363

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P L S  QKA FL YMVKCLL+AY GR K DNRDD RNK             +VHI HA 
Sbjct: 364  PTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHAR 423

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            RRM K +QRDLY DR V+ I+HYLDASI+TNGLSRAFSTGAW HP+KRMERI+GVVA+L 
Sbjct: 424  RRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLG 483

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            R NPLQ + DLR+TRQQV YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA+ G+
Sbjct: 484  RANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGL 543

Query: 1145 VSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRR 969
            VSTNI+E  +++ K  +SGME LV+DT   L+GK +VFL+G+WVGVC+DS SF A++RR+
Sbjct: 544  VSTNIME--SIVDKLFDSGMEELVNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRK 601

Query: 968  RRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSG 792
            RR  E P+Q+EIKRD+H GEVRIF+D GRILRPL VV NL +IK  KG +++FQ+LL  G
Sbjct: 602  RRSKEFPHQVEIKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGG 661

Query: 791  IVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHA 612
            I+E +G EEEEDC+TAW I YL T      PVKY+HCE D SFLLGLS GIIPFANHDHA
Sbjct: 662  IIELVGTEEEEDCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHA 721

Query: 611  RRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKG 432
            RRVLYQ+ KHSQQAIG+STTNP+IRVDT SHQLYYPQR LFRTM SDCLGK  +    KG
Sbjct: 722  RRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKG 781

Query: 431  MVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAG 252
            ++P+P+ +NGQ AIVAVNVHLGYNQEDSLVMNR+SLERGMFR+EHVRSYKAEV+N E   
Sbjct: 782  VLPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEIQD 841

Query: 251  KRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHT 72
            KR K+++IV+FGKIQSKIGRVDSLDDDGFPY+GANLQ GDIVIG+ A +G DHSIKLKHT
Sbjct: 842  KRRKSEDIVNFGKIQSKIGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHT 901

Query: 71   ERGMVQKVVLSANDEGKNFAVVS 3
            ERGMVQKVVLS+ND+GKN+AVVS
Sbjct: 902  ERGMVQKVVLSSNDDGKNYAVVS 924


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1045 bits (2701), Expect = 0.0
 Identities = 525/803 (65%), Positives = 624/803 (77%), Gaps = 21/803 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            +LPRHA LQNMTYSSR+KV   LQVYT    +SDKFKTG +  VE+ ++ + + ++  GR
Sbjct: 124  MLPRHARLQNMTYSSRMKVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGR 183

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMV+SDLCWM+  E+ DC+FD GGYF+IKG EK FIAQEQI +KRLW++    W+IAY
Sbjct: 184  IPVMVRSDLCWMNEVEKADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAY 243

Query: 1988 RPVSKRKRVFIKMVP--KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            R   KR R+ I++V   KVE++  GEK+LT YF   EIPVW++FFALGV +D+EVV LI 
Sbjct: 244  RSEVKRNRLIIRLVENSKVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLID 303

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGF-----------------RXXXXXXVEELISTYLF 1686
             +  +  I NIL  SI +AD K   F                 R      +EE +STYLF
Sbjct: 304  YESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLF 363

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P L S  QKA FL YMVKCLL+AY GR K DNRDD RNK             +VHI HA 
Sbjct: 364  PTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHAR 423

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            RRM K +QRDLY DR V+ I+HYLDASI+TNGLSRAFSTGAW HP+KRMERI+GVVA+L 
Sbjct: 424  RRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLG 483

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            R NPLQ + DLR+TRQQV YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA+ G+
Sbjct: 484  RANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGL 543

Query: 1145 VSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRR 969
            VSTNI+E  +++ K  +SGME LV+DT   L+GK +VFL+G+WVGVC+DS SF A++RR+
Sbjct: 544  VSTNIME--SIVDKLFDSGMEELVNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRK 601

Query: 968  RRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSG 792
            RR  E P+Q+EIKRD+H GEVRIF+D GRILRPL VV NL +IK  KG +++FQ+LL  G
Sbjct: 602  RRSKEFPHQVEIKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGG 661

Query: 791  IVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHA 612
            I+E +G EEEEDC+TAW I YL T      PVKY+HCE D SFLLGLS GIIPFANHDHA
Sbjct: 662  IIELVGTEEEEDCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHA 721

Query: 611  RRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKG 432
            RRVLYQ+ KHSQQAIG+STTNP+IRVDT SHQLYYPQR LFRTM SDCLGK  +    KG
Sbjct: 722  RRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKG 781

Query: 431  MVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAG 252
            ++P+P+ +NGQ AIVAVNVHLGYNQEDSLVMNR+SLERGMFR+EHVRSYKAEV+N E   
Sbjct: 782  VLPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEIQD 841

Query: 251  KRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHT 72
            KR K+++IV+FGKIQSKIGRVDSLDDDGFPY+GANLQ GDIVIG+ A +G DHSIKLKHT
Sbjct: 842  KRRKSEDIVNFGKIQSKIGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHT 901

Query: 71   ERGMVQKVVLSANDEGKNFAVVS 3
            ERGMVQKVVLS+ND+GKN+AVVS
Sbjct: 902  ERGMVQKVVLSSNDDGKNYAVVS 924


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1040 bits (2690), Expect = 0.0
 Identities = 519/803 (64%), Positives = 620/803 (77%), Gaps = 21/803 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            + PRHA LQNMTYSSR+KV+   QVYT+    SDKFKTG +  ++K +L++  T++  GR
Sbjct: 134  MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGR 193

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMVKSDLCWM   E+ DC+FD GGYF+IKGAEK F+AQEQICLKRLWV+    W++AY
Sbjct: 194  IPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAY 253

Query: 1988 RPVSKRKRVFIKMVP--KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            +  +KR R+ +++V   K E +  GEK+L+ YF   EIP+W++FFALGV +D+E+V LI 
Sbjct: 254  KSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLID 313

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLF 1686
               E+  I NIL  SIHDAD K D FR                        EE ++TYLF
Sbjct: 314  FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLF 373

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P L    QKA FL YMVKCLL+AY GRRK DNRDD RNK             +VHI HA 
Sbjct: 374  PSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHAR 433

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            +RM KA+QRDLY DR V+ I++YLDASI+TNGLSRAFSTGAW HPFKR ERI+G+VA+L 
Sbjct: 434  KRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 493

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            R NPLQ + DLRRTRQQV YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNL   G+
Sbjct: 494  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGL 553

Query: 1145 VSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRR 969
            VST+ILE   + ++   SGME L DD S  L GK +VF+DGDW+GVCKDS SFV++LRR+
Sbjct: 554  VSTSILE--PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRK 611

Query: 968  RRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSG 792
            RR+ E+P Q+EIKRD+   EVRIF DAGRILRPL VV+N+ KIK L+G +++FQ+LL  G
Sbjct: 612  RRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHG 671

Query: 791  IVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHA 612
            I+E +G EEEEDC TAWGI YL     +  P+K++HCE D SFLLGLS GIIPFANHDHA
Sbjct: 672  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 731

Query: 611  RRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKG 432
            RRVLYQS KHS QAIG+ TTNPSIRVDT SHQL+YPQR LFRTM+SDCLGK  Y  +H  
Sbjct: 732  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH-- 789

Query: 431  MVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAG 252
            ++PRP+ +NGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E   
Sbjct: 790  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 849

Query: 251  KRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHT 72
            KR  +D++V+FGKIQSKIGRVDSLDDDGFP+IGANLQ GDIVIGK+A +G DHSIKLKHT
Sbjct: 850  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHT 909

Query: 71   ERGMVQKVVLSANDEGKNFAVVS 3
            ERGMVQKVVLS+ND+GKNF+VVS
Sbjct: 910  ERGMVQKVVLSSNDDGKNFSVVS 932


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1028 bits (2658), Expect = 0.0
 Identities = 513/803 (63%), Positives = 618/803 (76%), Gaps = 21/803 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            + PRHA LQNMTYS+R+K+  ++QVYT+ + RSDKFKTG+D VV+K +++  + E+  GR
Sbjct: 132  MFPRHARLQNMTYSARMKIHVNVQVYTQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGR 191

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMVKSDLCW++T E+ DC+FD GGYF+IKGAEK FIAQEQIC+KRLW++    W+++Y
Sbjct: 192  IPVMVKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSY 251

Query: 1988 RPVSKRKRVFIKMVP--KVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            +   KR R+ +++V   K+E++   +K L  YF   EIP+W++FFALGV +D+EV+ LI 
Sbjct: 252  KSEVKRNRLIVRLVELSKLEYIKGEKKGLCVYFLSTEIPLWILFFALGVRSDKEVIDLID 311

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLF 1686
                +  I NI   SIHDAD+K + FR                       +E+ IS YLF
Sbjct: 312  YASNDASIVNIFFASIHDADEKCEHFRREDRALDYVDKLLKKTRFPPKESIEDAISAYLF 371

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P L SR  KA FL YMVKCLLEAY G RK DNRD  RNK             +VH+ HA 
Sbjct: 372  PRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFELASELLERELKVHVSHAL 431

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            RRM KA+QRDLY DR+V  I+HYLDASI+TNGL+RAFSTGAW HPFK MER++GVV +L 
Sbjct: 432  RRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLG 491

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            R NPLQ + DLR+TRQQV YTG+VGDARYPHPSHWG+VCFLSTPDGENCGLVKNLA  G+
Sbjct: 492  RANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGV 551

Query: 1145 VSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRR 969
            VSTNI E  +L+ K  +SGME LVDDT   L+GKH+VFL+G+WVGVC+DS  FV +LR  
Sbjct: 552  VSTNISE--SLVDKLFDSGMEKLVDDTYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSM 609

Query: 968  RRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLK-GHFSFQSLLSSG 792
            RR+ E+PYQ+EIKRD+   EVRIF+DAGRILRPL VV+NL KIK  K G++ F SLL  G
Sbjct: 610  RRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKG 669

Query: 791  IVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHA 612
            I+EFIG EEEEDC TAWGI +L        P+KYSHCE D SFLLGLS GIIPFANHDHA
Sbjct: 670  IIEFIGTEEEEDCCTAWGIKFLLADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHA 729

Query: 611  RRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKG 432
            RRVLYQ+ KHSQQAIG+STTNP+IRVDT SHQL+YPQR LFRTM+SDCL           
Sbjct: 730  RRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDCL----------- 778

Query: 431  MVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAG 252
            ++P+P+ FNGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E   
Sbjct: 779  VLPKPELFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTD 838

Query: 251  KRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHT 72
            KR K+++ ++FGKIQSKIGRVDSLDDDGFP+IGAN+Q+GDIVIGK A +G DHS+KLKHT
Sbjct: 839  KRRKSEDSITFGKIQSKIGRVDSLDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHT 898

Query: 71   ERGMVQKVVLSANDEGKNFAVVS 3
            ERGMVQKVVLS+NDEGKNFAVVS
Sbjct: 899  ERGMVQKVVLSSNDEGKNFAVVS 921


>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
            gi|462422378|gb|EMJ26641.1| hypothetical protein
            PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1008 bits (2606), Expect = 0.0
 Identities = 512/807 (63%), Positives = 613/807 (75%), Gaps = 25/807 (3%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            +LPRHA LQNM+Y+S++KV   ++VYT+ L  SDKFKTG    ++K IL+    ++  G 
Sbjct: 139  MLPRHARLQNMSYASKMKVNITVEVYTQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGS 198

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMVKSDLCWM   E+ DC+FD GGYF+IKGAEKTFIAQEQ CLKRL +      ++AY
Sbjct: 199  VPVMVKSDLCWMKDFEKGDCDFDHGGYFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAY 258

Query: 1988 RPVSKRKRVFIKMV--PKVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            R   KR R+ I++V   K+E++   EK+LT YF   EIPVW+ FFALGV +DREV+ LI 
Sbjct: 259  RSEVKRHRLIIRLVGISKLENIEGVEKVLTVYFMSTEIPVWIWFFALGVSSDREVMNLID 318

Query: 1814 LDPEEDDIANILMPSIHDADKKFD----GFRXXXXXX-----------------VEELIS 1698
             D E+  I+NIL  SI DADK  D    GFR                       +EE IS
Sbjct: 319  YDSEDASISNILFASIRDADKLNDKVDGGFRRGKNALKYVDEVIRKTAFPPGESMEECIS 378

Query: 1697 TYLFPHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHI 1518
             YLFP+L    QKA FL YMVK LL+AY GRRK DNRDD RNK             + HI
Sbjct: 379  LYLFPNLKGLKQKARFLGYMVKSLLQAYAGRRKCDNRDDFRNKRLDLAGELLERELKAHI 438

Query: 1517 KHAERRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVV 1338
             HA RRM KA+QRDLY DR V+ I+HYLDASI+TNG+SRAFSTGAW HPFKRMER++GVV
Sbjct: 439  GHARRRMAKALQRDLYGDRAVRPIEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVV 498

Query: 1337 ASLRRTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA 1158
            A++ R NPLQ + D+R+TRQQV YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA
Sbjct: 499  ATVGRANPLQTMVDMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLA 558

Query: 1157 SLGIVSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAK 981
            + G+VSTN+LE  +L+ +    GME LVDDT   L GK +VFL+GDWVGVC+DS SFV +
Sbjct: 559  TTGLVSTNVLE--SLIPQLLTCGMEKLVDDTFTSLRGKDKVFLNGDWVGVCEDSLSFVLE 616

Query: 980  LRRRRRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLK-GHFSFQSL 804
            LRR RR+ ++P+Q+EIKRD H GEVRIF+DAGRILRPL VV+NL K+K  K G  SFQ  
Sbjct: 617  LRRMRRRKKLPHQVEIKRDVHQGEVRIFSDAGRILRPLLVVENLNKVKASKGGKSSFQYF 676

Query: 803  LSSGIVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFAN 624
            L +GI+E IG EEEEDC TAWGI YLF  +      K++HCE D SFLLGLS GIIP+AN
Sbjct: 677  LDNGIIELIGAEEEEDCSTAWGIKYLFMEDKGKSATKFTHCELDMSFLLGLSCGIIPYAN 736

Query: 623  HDHARRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSD 444
            HDHARRVLYQ+ KHSQQAIG+STTNP++RVDT SHQL+YPQR LF+TM SDCLGK     
Sbjct: 737  HDHARRVLYQAQKHSQQAIGFSTTNPNLRVDTLSHQLHYPQRPLFQTMTSDCLGK---PG 793

Query: 443  HHKGMVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENS 264
             H  +VP+P+++NGQ AIVAVNVHLG+NQEDS+VMNRASLERGMFR+EH+RSYKAEV+N 
Sbjct: 794  RHNRIVPKPEYYNGQNAIVAVNVHLGFNQEDSIVMNRASLERGMFRSEHIRSYKAEVDNK 853

Query: 263  EGAGKRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIK 84
            E   KR K D+ V+FGK+QSK GRVDSLDDDGFPY+GANLQ+GDI+IG+ + +G DHSIK
Sbjct: 854  ESLDKRRKPDDCVNFGKMQSKFGRVDSLDDDGFPYVGANLQSGDIIIGRCSESGADHSIK 913

Query: 83   LKHTERGMVQKVVLSANDEGKNFAVVS 3
            LKHTERGMVQKV+LS+ND+GKNFAVVS
Sbjct: 914  LKHTERGMVQKVLLSSNDDGKNFAVVS 940


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1007 bits (2604), Expect = 0.0
 Identities = 510/802 (63%), Positives = 610/802 (76%), Gaps = 20/802 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            +LPRHA LQNMTYSS++KV   ++VYT  + RSDKFKTG D  V+K +LN  +  +  G 
Sbjct: 144  MLPRHARLQNMTYSSKMKVNVSVEVYTRKVVRSDKFKTGKDQYVDKEVLNTDNRNITIGS 203

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            LPVMVKSDLCWM T E+ DC+FD GGYF+IKGAEK FIAQEQICLKRLW++    W+++Y
Sbjct: 204  LPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSY 263

Query: 1988 RPVSKRKRVFIKMV--PKVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            +   KR R+ +++V    +E + A +K LT YF   EIP+W++FFALGV +D+EV+ LIG
Sbjct: 264  KSEIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEIPLWILFFALGVTSDKEVIDLIG 323

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGFRXXXXXXV----------------EELISTYLFP 1683
                +  I NI   SIHDAD+K +GFR                       E+    YLFP
Sbjct: 324  YGSNDARIVNIFFASIHDADEKTEGFRRGKEALEYVVRQIRGTRFPPGENEDFFLLYLFP 383

Query: 1682 HLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAER 1503
             L S  QKA FL YMVKCLL+AY G+RK +N D  RNK             +VHI HA R
Sbjct: 384  TLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDSFRNKRFELAKELLERELKVHIAHARR 443

Query: 1502 RMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLRR 1323
            RM KA+Q+DLY DR+V+ I+HYLDASI+TNGLSRAFSTGAW HP+KRMERI+GVVA+L R
Sbjct: 444  RMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGR 503

Query: 1322 TNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGIV 1143
             NPLQ + DLR+TR  V YTG+VGDAR+PHPSHWG+VCFLSTPDGENCGLVKNLA+ G+V
Sbjct: 504  ANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLV 563

Query: 1142 STNILEHANLLKKFHESGMELV-DDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRRR 966
            S NILE   L+ K    GME V +D+   L+ K +VFL+G+WVGVC+DS  FVA+LRR R
Sbjct: 564  SVNILEP--LIDKLIARGMEKVPEDSHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLR 621

Query: 965  RKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSSGI 789
            R+ ++P Q+EIKRD+   EVRIF+DAGRILRPL VVQNL KI+  KG + +FQSLL  GI
Sbjct: 622  RRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGI 681

Query: 788  VEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHAR 609
            +EF+G EEEEDC TAWGI +L +       +KY+HCE D SFLLGLS GIIPFANHDHAR
Sbjct: 682  IEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHAR 741

Query: 608  RVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKGM 429
            RVLYQ+ KHSQQAIG+ TTNP+IRVDT SHQLYYPQR LFRT+ SDCLGK   +  H G+
Sbjct: 742  RVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGI 801

Query: 428  VPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAGK 249
            VP+P+ +NGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKA+V+N E   K
Sbjct: 802  VPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDK 861

Query: 248  RLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHTE 69
            R K D+ V+FGKI SKIGRVDSLDDDGFP+IGANLQ+GDIVIG+ A +G DHSIKLKHTE
Sbjct: 862  RRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTE 921

Query: 68   RGMVQKVVLSANDEGKNFAVVS 3
            RGMVQKVVLS+NDEGKNFAVVS
Sbjct: 922  RGMVQKVVLSSNDEGKNFAVVS 943


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1006 bits (2602), Expect = 0.0
 Identities = 510/803 (63%), Positives = 611/803 (76%), Gaps = 21/803 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            +LPRHA LQ MTY+S++KV   +QVY     RSDKFKTG +  +++ I+ + + E+  GR
Sbjct: 141  MLPRHARLQRMTYASKMKVNVQVQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGR 200

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            LPVMVKSDLCWM+  E+ DCEFD GGYF+IKGAEK FIAQEQI LKRLWV   P W++AY
Sbjct: 201  LPVMVKSDLCWMNGVEKGDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAY 260

Query: 1988 RPVSKRKRVFIKMVPK--VEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            +   KR R+ +K+V    VE +  GEK+LT YF   EIPVWL+FFALGV +D+++V LI 
Sbjct: 261  KSQMKRNRMVVKLVENTTVEGIKNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLID 320

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLF 1686
                +  I NIL  SI +AD+K + FR                       ++E ++ Y+F
Sbjct: 321  YGEGDGRIQNILFASIREADEKCEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVF 380

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P++    +KA +LAYMVK LL AY GRRK DNRDD RNK             +VHI HA 
Sbjct: 381  PNIKGLNRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHAR 440

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            +RM KA+QRDLY DR+V  I+HYLDASIITNGL RAFSTGAW HP+KRMERI+GVVA+L 
Sbjct: 441  KRMAKALQRDLYGDRDVHQIEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLG 500

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            RTNPLQ + +LRRTRQQV YTG+VGDARYPHPSHWGKVCFLSTPDGENCGLVKN+A  G+
Sbjct: 501  RTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGL 560

Query: 1145 VSTNILEHANLLKKFHESGM-ELVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRR 969
            VSTN+ E  ++L +    GM ELVDDT+ +L  K +VFL+GDWVGVC DS+SFVA+LR R
Sbjct: 561  VSTNVTE--SILPQLFACGMEELVDDTTAVLGNKDKVFLNGDWVGVCSDSASFVAELRNR 618

Query: 968  RRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKGH-FSFQSLLSSG 792
            RRK E+P+Q+EIKRD    EVRI +DAGRILRPL VV NL KIK  K    SFQSLL +G
Sbjct: 619  RRKNELPHQVEIKRDPSQEEVRILSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNG 678

Query: 791  IVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHA 612
            ++E IGPEEEEDC+TAWG+ YLF  E ++  VKY+HCE D SFLLGLS  ++PFANHDHA
Sbjct: 679  LIELIGPEEEEDCKTAWGVPYLFGKEGKS-SVKYTHCELDMSFLLGLSCSLVPFANHDHA 737

Query: 611  RRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKG 432
            RRVLYQS KHS QAIG+STTNP IRVD  SHQL+YPQ+ LF+TM SDCLGK  Y    K 
Sbjct: 738  RRVLYQSQKHSSQAIGFSTTNPDIRVDALSHQLFYPQKPLFQTMTSDCLGKPGYLGPSK- 796

Query: 431  MVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAG 252
            ++P+ +F+NGQ AIVAVNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYKAE EN E   
Sbjct: 797  LLPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTE 856

Query: 251  KRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHT 72
            K+ K ++IV+FGKIQSKIGRVDSLDDDGFP++GANLQ GDI+IG+ A +G DHSIKLKHT
Sbjct: 857  KKRKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHT 916

Query: 71   ERGMVQKVVLSANDEGKNFAVVS 3
            ERG VQKVVLS+NDEGKNFAVVS
Sbjct: 917  ERGYVQKVVLSSNDEGKNFAVVS 939


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1002 bits (2590), Expect = 0.0
 Identities = 508/803 (63%), Positives = 604/803 (75%), Gaps = 21/803 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            +LPRHA LQNMTYS+R+ V   +QVYT+ L  SDKFKTG + ++EKT L+    ++  GR
Sbjct: 142  MLPRHARLQNMTYSARMSVNITVQVYTQNLVESDKFKTGTEQLLEKTTLSTDSRDIIIGR 201

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            +PVMVKS+LCWM   E+ DCEFDQGGYF+I GAEKTFIAQEQ CLKRL +      ++AY
Sbjct: 202  IPVMVKSNLCWMKGVEKGDCEFDQGGYFIINGAEKTFIAQEQSCLKRLLITNSQGLTVAY 261

Query: 1988 RPVSKRKRVFIKM--VPKVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            R   KR R+ I++  + K+E++   EK+L+ YF   EIPVW+ FFALGV +D+EV+ LI 
Sbjct: 262  RSEVKRHRLIIRLSGISKLENVEGVEKVLSVYFMSTEIPVWIWFFALGVSSDKEVIDLID 321

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLF 1686
               E+  I+NIL  SI DAD++ D FR                       VE+ IS YLF
Sbjct: 322  YGIEDASISNILFASIRDADERKDDFRRGNNALRYVENAIKSTTFPPGESVEDCISMYLF 381

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P++    QKA FL YMVKCLL+   G RK DNRDD RNK             + H+ HA 
Sbjct: 382  PNMRGLKQKARFLGYMVKCLLQTSIGLRKCDNRDDFRNKRLELAGELLERELKAHVSHAR 441

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            R+M KA+QRDL  D  V+ ++HYLDASI+TNG+SRAFSTGAW HPFKRMERI+GVVA++ 
Sbjct: 442  RKMAKALQRDLGGDHVVRPVEHYLDASIVTNGVSRAFSTGAWCHPFKRMERISGVVANIG 501

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            R NPLQ + D+R+TRQQV YTG+ GDARYPHPSHWGKVCFLSTPDGENCGLVKNLA+  +
Sbjct: 502  RANPLQTMIDMRKTRQQVQYTGKAGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTAL 561

Query: 1145 VSTNILEHANLLKKFHESGME-LVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRRR 969
            VS NI E   +L K  + G+E LVDDT   L GKH+VFL+GDWVG+C DS  FV KLRR 
Sbjct: 562  VSINISEP--ILPKLFKCGIEELVDDTYTSLAGKHKVFLNGDWVGICVDSHGFVTKLRRL 619

Query: 968  RRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKGH-FSFQSLLSSG 792
            RR  ++P+Q+EIKRD+H GEVRIF+DAGRILRPL VVQ LKKIK  KG   +FQ  L  G
Sbjct: 620  RRSKKLPHQVEIKRDEHKGEVRIFSDAGRILRPLLVVQGLKKIKAAKGEKHTFQDFLDKG 679

Query: 791  IVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDHA 612
            I+EFIG EEEEDC+TAW I YLF  E +   VKY+HCE D SFLLGLS GIIPFANHDHA
Sbjct: 680  IIEFIGAEEEEDCRTAWAIKYLFMEE-QGSVVKYTHCELDMSFLLGLSCGIIPFANHDHA 738

Query: 611  RRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHKG 432
            RRVLYQS KHSQQAIGYSTTNP++RVDT SH L+YPQR LFRTM++D LGK  Y   H G
Sbjct: 739  RRVLYQSQKHSQQAIGYSTTNPNLRVDTLSHNLHYPQRPLFRTMIADSLGKPGYPVGHNG 798

Query: 431  MVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGAG 252
             +P+P++FNGQ AIVAVNVHLGYNQEDS+VMNRASLERGMFR+EH+RSYKAEVEN     
Sbjct: 799  FMPKPEYFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRSEHIRSYKAEVENKLSLE 858

Query: 251  KRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKHT 72
            KR K DE V+FGKIQSK GRVD+LDDDGFP +GA+LQ+GDI+IG+ + +G DHSIKLKHT
Sbjct: 859  KRRKPDECVNFGKIQSKFGRVDNLDDDGFPCVGASLQSGDIIIGRCSESGTDHSIKLKHT 918

Query: 71   ERGMVQKVVLSANDEGKNFAVVS 3
            ERGMVQKVVLS+ND GKNFAVVS
Sbjct: 919  ERGMVQKVVLSSNDAGKNFAVVS 941


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score =  992 bits (2564), Expect = 0.0
 Identities = 498/804 (61%), Positives = 609/804 (75%), Gaps = 22/804 (2%)
 Frame = -1

Query: 2348 LLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDTVVEKTILNEYHTEVNFGR 2169
            +LPRHA +Q MTY+S++K++  +QVY     RSDKFKTG +  +++ I+ E   E+  GR
Sbjct: 143  MLPRHARIQRMTYASKVKIQVKVQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGR 202

Query: 2168 LPVMVKSDLCWMSTREERDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVAKEPTWSIAY 1989
            LPVMVKSDLCWM   E+ D EFD GGYF++KGAEKTFIAQEQ+ LKRLWV   P W IAY
Sbjct: 203  LPVMVKSDLCWMKDAEKDDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAY 262

Query: 1988 RPVSKRKRVFIKMV--PKVEHLVAGEKILTAYFYVAEIPVWLMFFALGVPNDREVVKLIG 1815
            +   KR R+ IK+V   + E +  G+  LT YF   E+PVW++FFALGV +D+E+V LIG
Sbjct: 263  KSQMKRNRMVIKLVGNSRSEEVENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIG 322

Query: 1814 LDPEEDDIANILMPSIHDADKKFDGFRXXXXXX-----------------VEELISTYLF 1686
               ++  I NIL  S+ DAD+K   FR                       ++E +  Y+F
Sbjct: 323  CGNDDVRIQNILFASVRDADEKCGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVF 382

Query: 1685 PHLTSRGQKASFLAYMVKCLLEAYRGRRKVDNRDDMRNKXXXXXXXXXXXXXRVHIKHAE 1506
            P ++   +KA FLAYMVK LL AY GRRK DNRDD RNK             +VH+ HA 
Sbjct: 383  PGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHAR 442

Query: 1505 RRMVKAMQRDLYKDREVQSIDHYLDASIITNGLSRAFSTGAWVHPFKRMERIAGVVASLR 1326
            +RM KA+QRDLY DR+V+ I+HYLDASIITNGL RAFSTGAW HP+KRMERI+GVVA++ 
Sbjct: 443  KRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVG 502

Query: 1325 RTNPLQAVCDLRRTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGI 1146
            RTNPLQ + +LRR RQQV YTG+VGDARYPHPSHWGKVCFL+TPDGENCGLVKNL+  G+
Sbjct: 503  RTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGL 562

Query: 1145 VSTNILEHA-NLLKKFHESGM-ELVDDTSCLLNGKHRVFLDGDWVGVCKDSSSFVAKLRR 972
            VST++ +   ++L K  + GM ELVDDTS  L    +V L+GDWVGVC DSSSFVA+LR 
Sbjct: 563  VSTDVTDVTESILLKLVDCGMQELVDDTSTHLGSMDKVLLNGDWVGVCPDSSSFVAELRS 622

Query: 971  RRRKLEVPYQIEIKRDKHHGEVRIFADAGRILRPLFVVQNLKKIKDLKG-HFSFQSLLSS 795
            RRR+ E+P+Q+EIKRD+   EVRI++DAGRILRPL VV NL KIK  K   +SFQSLL  
Sbjct: 623  RRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDK 682

Query: 794  GIVEFIGPEEEEDCQTAWGIDYLFTAELENPPVKYSHCEFDSSFLLGLSTGIIPFANHDH 615
            G++E IGPEEEEDC TAWG++YLF  E +   VKY+HCE D SFLLGLS  ++PFANHDH
Sbjct: 683  GVIELIGPEEEEDCCTAWGVEYLFGKEGKRS-VKYTHCELDMSFLLGLSCSLVPFANHDH 741

Query: 614  ARRVLYQSAKHSQQAIGYSTTNPSIRVDTNSHQLYYPQRSLFRTMLSDCLGKSRYSDHHK 435
            ARRVLYQS KHS QAIG+STTNP+IRVDT SHQL+YPQ+ LFRTM SDCLGK  +S    
Sbjct: 742  ARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQS 801

Query: 434  GMVPRPDFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENSEGA 255
             + P+ +F+NGQ AIVAVNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYK+E++N E +
Sbjct: 802  KIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESS 861

Query: 254  GKRLKADEIVSFGKIQSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAAAGVDHSIKLKH 75
             K+ K ++IV+F K+QSKIGRVDSLDDDGFPY+GANLQ+GDI+IGK A +G D+S+KLKH
Sbjct: 862  DKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKH 921

Query: 74   TERGMVQKVVLSANDEGKNFAVVS 3
            TERG VQKVVLS+NDEGKNFAVVS
Sbjct: 922  TERGYVQKVVLSSNDEGKNFAVVS 945