BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00011185
         (905 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU44877.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus...   178   3e-42
gb|EYU44876.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus...   178   3e-42
ref|XP_006347341.1| PREDICTED: RNA polymerase sigma factor sigA-...   157   5e-36
ref|XP_004241445.1| PREDICTED: RNA polymerase sigma factor sigA-...   155   2e-35
ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-...   155   3e-35
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      154   6e-35
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   153   8e-35
ref|XP_007029767.1| Sigma factor A isoform 2 [Theobroma cacao] g...   153   1e-34
ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao] g...   153   1e-34
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              151   3e-34
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   150   7e-34
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   150   9e-34
ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prun...   149   1e-33
ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Popu...   148   3e-33
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   148   3e-33
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   148   3e-33
ref|XP_004499501.1| PREDICTED: RNA polymerase sigma factor sigA-...   147   7e-33
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-...   146   1e-32
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   146   1e-32
ref|XP_007131471.1| hypothetical protein PHAVU_011G016400g [Phas...   145   2e-32

>gb|EYU44877.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus guttatus]
           gi|604346415|gb|EYU44878.1| hypothetical protein
           MIMGU_mgv1a004509mg [Mimulus guttatus]
          Length = 520

 Score =  178 bits (451), Expect = 3e-42
 Identities = 128/307 (41%), Positives = 161/307 (52%), Gaps = 39/307 (12%)
 Frame = +2

Query: 101 LLLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITA----TAKKS------RRPHSVKA 250
           LLL ++ +YSD+S + + CS       T+++  I ++     AKKS      R PHS++A
Sbjct: 18  LLLSSSLFYSDVSDKFVACS-------TDSHCPIASSKKPINAKKSSNFFSNRHPHSIRA 70

Query: 251 LKD----PHSPCSL----IH--------DHHPDEYLVDALLLLQKSMLEKQWNLAPEXXX 382
           LK+       PC+L    IH        D   DEYLVDA+LLLQKS+LEKQWNL+ E   
Sbjct: 71  LKEHVDAASDPCTLEPWLIHGSTLLGEEDETSDEYLVDAVLLLQKSLLEKQWNLSAESST 130

Query: 383 XXXXXXXXXXX---------SEIDEVACSGTSARWRRMESRRIRGGAD----DDEMMIPQ 523
                                +I +V CSGTSAR RRM+SR+   G +      + +  Q
Sbjct: 131 KQTVTSPRERTPAPARARARKKITQVTCSGTSARSRRMDSRKKAVGRNISNSHHDNVRKQ 190

Query: 524 WXXXXXXXXXXXXXXXXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEE 703
           W                                 +S+ LL+H +VV+LS  IKAGL LE+
Sbjct: 191 WRSIISPELL------------QNSSRRGYVKGVISEDLLTHSQVVQLSQIIKAGLLLED 238

Query: 704 RRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDN 883
           RRSRLK+RLGCEPSDE                 IECSLAREKLAMSNIRLVMSIAQRYD+
Sbjct: 239 RRSRLKERLGCEPSDEQLATSLQISRADLQSKLIECSLAREKLAMSNIRLVMSIAQRYDH 298

Query: 884 MGAEMPD 904
           MGAEM D
Sbjct: 299 MGAEMAD 305


>gb|EYU44876.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus guttatus]
          Length = 523

 Score =  178 bits (451), Expect = 3e-42
 Identities = 128/307 (41%), Positives = 161/307 (52%), Gaps = 39/307 (12%)
 Frame = +2

Query: 101 LLLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITA----TAKKS------RRPHSVKA 250
           LLL ++ +YSD+S + + CS       T+++  I ++     AKKS      R PHS++A
Sbjct: 18  LLLSSSLFYSDVSDKFVACS-------TDSHCPIASSKKPINAKKSSNFFSNRHPHSIRA 70

Query: 251 LKD----PHSPCSL----IH--------DHHPDEYLVDALLLLQKSMLEKQWNLAPEXXX 382
           LK+       PC+L    IH        D   DEYLVDA+LLLQKS+LEKQWNL+ E   
Sbjct: 71  LKEHVDAASDPCTLEPWLIHGSTLLGEEDETSDEYLVDAVLLLQKSLLEKQWNLSAESST 130

Query: 383 XXXXXXXXXXX---------SEIDEVACSGTSARWRRMESRRIRGGAD----DDEMMIPQ 523
                                +I +V CSGTSAR RRM+SR+   G +      + +  Q
Sbjct: 131 KQTVTSPRERTPAPARARARKKITQVTCSGTSARSRRMDSRKKAVGRNISNSHHDNVRKQ 190

Query: 524 WXXXXXXXXXXXXXXXXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEE 703
           W                                 +S+ LL+H +VV+LS  IKAGL LE+
Sbjct: 191 WRSIISPELL------------QNSSRRGYVKGVISEDLLTHSQVVQLSQIIKAGLLLED 238

Query: 704 RRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDN 883
           RRSRLK+RLGCEPSDE                 IECSLAREKLAMSNIRLVMSIAQRYD+
Sbjct: 239 RRSRLKERLGCEPSDEQLATSLQISRADLQSKLIECSLAREKLAMSNIRLVMSIAQRYDH 298

Query: 884 MGAEMPD 904
           MGAEM D
Sbjct: 299 MGAEMAD 305


>ref|XP_006347341.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1
           [Solanum tuberosum] gi|565361192|ref|XP_006347342.1|
           PREDICTED: RNA polymerase sigma factor sigA-like isoform
           X2 [Solanum tuberosum]
          Length = 505

 Score =  157 bits (397), Expect = 5e-36
 Identities = 114/289 (39%), Positives = 149/289 (51%), Gaps = 22/289 (7%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITATAKKS--------RRPHSVKALKD 259
           +L ++ YYSDL+ EKL CS GD     N   ++I A    +        R+  SVKA+K+
Sbjct: 15  ILSSSFYYSDLT-EKLACS-GDHALICNPTWNVINAKKSSNYSTGYVSNRKKQSVKAVKE 72

Query: 260 PHSPCSLIHDHHP--------------DEYLVDALLLLQKSMLEKQWNLAPEXXXXXXXX 397
             +  S   D  P              +E  V+ LLLLQKSMLEKQWNL+ E        
Sbjct: 73  HVNIASNHSDVEPMVEMFKKLQNESFSEEDSVEVLLLLQKSMLEKQWNLSAEKTLAAFPP 132

Query: 398 XXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXXXXX 577
                  ++ ++ CSGTSAR RRM++R+         + IP+                  
Sbjct: 133 NEKNCKKKM-QITCSGTSARRRRMDTRK--------RVQIPKTSAAANSASKRLRSVVGP 183

Query: 578 XXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEXX 757
                Q          V+Q+LL+H EVV+LS KIK GL LEE+++ LK+RLGCEPSD+  
Sbjct: 184 EL--QQNRLRGYMKGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCEPSDDQL 241

Query: 758 XXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
                          +ECSLAREKLAMSN+RLVMSIAQRYD+MG EM D
Sbjct: 242 AVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMAD 290


>ref|XP_004241445.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
           lycopersicum]
          Length = 505

 Score =  155 bits (393), Expect = 2e-35
 Identities = 114/289 (39%), Positives = 148/289 (51%), Gaps = 22/289 (7%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITATAKKS--------RRPHSVKALKD 259
           +L ++ YYSDL+ EKL CS GD     N   ++I A    +        R+  SVKA+K+
Sbjct: 15  ILSSSFYYSDLT-EKLACS-GDHALICNPTRNVINAKKSSNYSAGYVSNRKKQSVKAVKE 72

Query: 260 PHSPCSLIHDHHP--------------DEYLVDALLLLQKSMLEKQWNLAPEXXXXXXXX 397
             +  S   D  P               E  V+ LLLLQKSMLEKQWNL+ E        
Sbjct: 73  HVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWNLSAEKTLEAFPP 132

Query: 398 XXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXXXXX 577
                  ++ ++ CSGTSAR RRM++R+         + IP+                  
Sbjct: 133 NEKNCKKKM-QITCSGTSARRRRMDTRK--------RVQIPKASAEANSASKRLRSVVGP 183

Query: 578 XXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEXX 757
                Q          V+Q+LL+H EVV+LS KIK GL LEE+++ LK+RLGCEPSD+  
Sbjct: 184 EL--QQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCEPSDDQL 241

Query: 758 XXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
                          +ECSLAREKLAMSN+RLVMSIAQRYD+MG EM D
Sbjct: 242 AVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMAD 290


>ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
           lycopersicum]
          Length = 509

 Score =  155 bits (391), Expect = 3e-35
 Identities = 119/293 (40%), Positives = 147/293 (50%), Gaps = 26/293 (8%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAG------DLPTNTNTYT----SIITATAKKSRRPHSVKAL 253
           LL ++ YYSDL+ EKL CS+        +PT  N  +    S  + +   SR+  SVKAL
Sbjct: 16  LLSSSFYYSDLN-EKLSCSSDHSLPCHQVPTVKNVISAKKSSDYSPSCVSSRKLQSVKAL 74

Query: 254 K-------DPHSPCSLIH---------DHHPDEYLVDALLLLQKSMLEKQWNLAPEXXXX 385
           K       DP    S            D   D+  V+ LLLLQKSMLEKQWNL+ E    
Sbjct: 75  KEHVDIASDPSDVQSWFERFEQLQNESDDEEDDS-VEVLLLLQKSMLEKQWNLSAEETLT 133

Query: 386 XXXXXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXX 565
                          +ACSGTSAR RRM+SR+           I                
Sbjct: 134 ASTQRKKNCKKM--HIACSGTSARRRRMDSRQRVLAQKSSATPISATKPLRSILGPDLL- 190

Query: 566 XXXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPS 745
                    Q          VS++LL+H EV++LS KIK GL +EE++SRLK+RLGCEPS
Sbjct: 191 ---------QNRLKGYVKGIVSEELLTHTEVLQLSKKIKVGLHVEEQKSRLKERLGCEPS 241

Query: 746 DEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
           D+                 IECSLARE+L+MSN+RLVMSIAQRYDNMGAEM D
Sbjct: 242 DDQLAVSLKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMAD 294


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  154 bits (388), Expect = 6e-35
 Identities = 116/291 (39%), Positives = 150/291 (51%), Gaps = 24/291 (8%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGD------LPTNTNTYT----SIITATAKKSRRPHSVKAL 253
           LL ++ YYSDL+ EKL C++        +P+  N  T    S  + +   SR+  S K+L
Sbjct: 16  LLSSSFYYSDLN-EKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSPSCVSSRKSQSAKSL 74

Query: 254 K-------DPHSPCS-------LIHDHHPDEYLVDALLLLQKSMLEKQWNLAPEXXXXXX 391
           K       DP    S       L ++   ++  V+ LLLLQKSMLEKQWNL+ E      
Sbjct: 75  KEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLEKQWNLSLEQTLTAS 134

Query: 392 XXXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXXX 571
                   S+   + CSGTSAR RRM+SR+     D      P                 
Sbjct: 135 PQHEKK--SKKMHITCSGTSARRRRMDSRQ--RVLDRHSSATPTSAAKPLRSIIGPELL- 189

Query: 572 XXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDE 751
                  Q          VS++LL+H EV++LS KI+ GL LEE++SRLK+RLGCEPSD+
Sbjct: 190 -------QNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSDD 242

Query: 752 XXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
                            IECSLARE+LAMSN+RLVMSIAQRYDN+GAEM D
Sbjct: 243 QLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMAD 293


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
           vinifera]
          Length = 497

 Score =  153 bits (387), Expect = 8e-35
 Identities = 114/289 (39%), Positives = 141/289 (48%), Gaps = 22/289 (7%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDL---------PTNTNTYTSIITATAKKSRRPHSVKALK 256
           LL ++ +YSD+ AEKL     D+         P N  +       T   +R   S+KALK
Sbjct: 16  LLASSHHYSDV-AEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYTPSSNRSIQSMKALK 74

Query: 257 DPHSPCSLIHDHHPD-----------EYLVDALLLLQKSMLEKQWNLA-PEXXXXXXXXX 400
           +     S      PD           EYLV+A LLLQKSMLEKQWNL+  E         
Sbjct: 75  EHVESASAPSTADPDLSSSSSEVEDEEYLVEAFLLLQKSMLEKQWNLSFEEEEEEEEEDM 134

Query: 401 XXXXXSEIDEVACSGTSARWRRMESR-RIRGGADDDEMMIPQWXXXXXXXXXXXXXXXXX 577
                 +  EV CSGTSAR RR+  R R+        +                      
Sbjct: 135 GKKARQKRREVTCSGTSARQRRISGRKRVMNEKSKSRVRAALGV---------------- 178

Query: 578 XXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEXX 757
                +          VS++LL+H +VV LS+KIKAGL LE+ +SRLK+R+G EP+DE  
Sbjct: 179 -----ENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQV 233

Query: 758 XXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
                          IECSLAREKLAMSN+RLVMSIAQRYDNMGAEM D
Sbjct: 234 AASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD 282


>ref|XP_007029767.1| Sigma factor A isoform 2 [Theobroma cacao]
           gi|508718372|gb|EOY10269.1| Sigma factor A isoform 2
           [Theobroma cacao]
          Length = 450

 Score =  153 bits (386), Expect = 1e-34
 Identities = 118/292 (40%), Positives = 142/292 (48%), Gaps = 25/292 (8%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITATAKKS-----------RRPHSVKA 250
           LL ++  YSD+  EKL  +     ++  T ++     AKKS           RR  S+KA
Sbjct: 16  LLSSSFSYSDI-IEKLSYANDYGSSHHQTSSTKSLIVAKKSSNCSQSLPSSNRRAQSIKA 74

Query: 251 LKDPHSPCSLIHDHHPD--------------EYLVDALLLLQKSMLEKQWNLAPEXXXXX 388
           LK+     S++    P               +Y V+ALLLLQKSMLEKQW L+ E     
Sbjct: 75  LKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSMLEKQWTLSFERTVFT 134

Query: 389 XXXXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXX 568
                         V CSG SAR RR  ++R        +++I                 
Sbjct: 135 ESPSRKIHKKI--PVTCSGVSARQRRFNTKR--------KILIQNKSIIQPNAKQLRSLI 184

Query: 569 XXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSD 748
                    K         VS +LLSH EVVRLS KIKAGL+LEE R RLK+RLGCEPSD
Sbjct: 185 SPELLQSRLKGYVKGV---VSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKERLGCEPSD 241

Query: 749 EXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
           E                 IECSLAREKLAMSN+RLVMSIAQRYDNMGAEM D
Sbjct: 242 EQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSD 293


>ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao]
           gi|508718371|gb|EOY10268.1| Sigma factor A isoform 1
           [Theobroma cacao]
          Length = 508

 Score =  153 bits (386), Expect = 1e-34
 Identities = 118/292 (40%), Positives = 142/292 (48%), Gaps = 25/292 (8%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITATAKKS-----------RRPHSVKA 250
           LL ++  YSD+  EKL  +     ++  T ++     AKKS           RR  S+KA
Sbjct: 16  LLSSSFSYSDI-IEKLSYANDYGSSHHQTSSTKSLIVAKKSSNCSQSLPSSNRRAQSIKA 74

Query: 251 LKDPHSPCSLIHDHHPD--------------EYLVDALLLLQKSMLEKQWNLAPEXXXXX 388
           LK+     S++    P               +Y V+ALLLLQKSMLEKQW L+ E     
Sbjct: 75  LKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSMLEKQWTLSFERTVFT 134

Query: 389 XXXXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXX 568
                         V CSG SAR RR  ++R        +++I                 
Sbjct: 135 ESPSRKIHKKI--PVTCSGVSARQRRFNTKR--------KILIQNKSIIQPNAKQLRSLI 184

Query: 569 XXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSD 748
                    K         VS +LLSH EVVRLS KIKAGL+LEE R RLK+RLGCEPSD
Sbjct: 185 SPELLQSRLKGYVKGV---VSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKERLGCEPSD 241

Query: 749 EXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
           E                 IECSLAREKLAMSN+RLVMSIAQRYDNMGAEM D
Sbjct: 242 EQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSD 293


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  151 bits (382), Expect = 3e-34
 Identities = 113/288 (39%), Positives = 140/288 (48%), Gaps = 21/288 (7%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDL---------PTNTNTYTSIITATAKKSRRPHSVKALK 256
           LL ++ +YSD+ AEKL     D+         P N  +       T   +R   S+KALK
Sbjct: 87  LLASSHHYSDV-AEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYTPSSNRSIQSMKALK 145

Query: 257 DPHSPCSLIHDHHPD-----------EYLVDALLLLQKSMLEKQWNLAPEXXXXXXXXXX 403
           +     S      PD           EYLV+A LLLQKSMLEKQWNL+            
Sbjct: 146 EHVESASAPSTADPDLSSSSSEVEDEEYLVEAFLLLQKSMLEKQWNLS------------ 193

Query: 404 XXXXSEIDEVACSGTSARWRRMESR-RIRGGADDDEMMIPQWXXXXXXXXXXXXXXXXXX 580
                +  EV CSGTSAR RR+  R R+        +                       
Sbjct: 194 FKARQKRREVTCSGTSARQRRISGRKRVMNEKSKSRVRAALGV----------------- 236

Query: 581 XPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEXXX 760
               +          VS++LL+H +VV LS+KIKAGL LE+ +SRLK+R+G EP+DE   
Sbjct: 237 ----ENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVA 292

Query: 761 XXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
                         IECSLAREKLAMSN+RLVMSIAQRYDNMGAEM D
Sbjct: 293 ASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD 340


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 508

 Score =  150 bits (379), Expect = 7e-34
 Identities = 114/291 (39%), Positives = 137/291 (47%), Gaps = 24/291 (8%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITATAKKS----------RRPHSVKAL 253
           LL +T YYSDL+ +    +   L     T T  +    K S          R   S+KAL
Sbjct: 15  LLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPSFPSSNRNTQSIKAL 74

Query: 254 KDPHSPCSL-------------IHDHHPD-EYLVDALLLLQKSMLEKQWNLAPEXXXXXX 391
           K+     S              + +   D +Y V+ALLLLQKSMLEKQWNL+ E      
Sbjct: 75  KEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLEKQWNLSFERTDSSD 134

Query: 392 XXXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXXX 571
                        V CSG SAR RR+  RR         +    +               
Sbjct: 135 SPSRKSQKKI--PVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQLKSAVSPELL--- 189

Query: 572 XXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDE 751
                  Q          VS++LLSH EVVRLS  IKAGL+LE+ +SRLK+RLGC+PSDE
Sbjct: 190 -------QNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPSDE 242

Query: 752 XXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
                            I CSLAREKLAMSN+RLVMSIAQRYDNMGAEM D
Sbjct: 243 QVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD 293


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
           gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
           polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  150 bits (378), Expect = 9e-34
 Identities = 113/290 (38%), Positives = 146/290 (50%), Gaps = 23/290 (7%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDL-PTNTNTYTSIITATAKKSRRP-------HS---VKA 250
           LL ++SYYSD + + L  +   L  T  ++  S++ A +  +  P       HS   +KA
Sbjct: 16  LLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSPRYPSSNRHSQQCIKA 75

Query: 251 LKDP------------HSPCSLIHDHHPDEYLVDALLLLQKSMLEKQWNLAPEXXXXXXX 394
           +K+             H+  S   +    +Y V+ALLLLQKSMLEKQW+L+ E       
Sbjct: 76  VKEHVETPSSPIAEPWHNTTSWEDEETELKYTVEALLLLQKSMLEKQWSLSFEQTVSTDT 135

Query: 395 XXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXXXX 574
                       V CSG SAR RRM S+R         + + Q                 
Sbjct: 136 PKEKTLKKV--PVTCSGVSARQRRMSSKR---KIQSKHVFMAQPKISKQLRPTISPELLQ 190

Query: 575 XXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEX 754
                + K         +S++LLSH EVVRLS KIK GL LEER++RLKQRLGCEPS++ 
Sbjct: 191 NRLKGYVKGL-------LSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEPSEDQ 243

Query: 755 XXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
                           +E SLAREKLAMSN+RLVMSIAQRYDNMGAEM D
Sbjct: 244 LAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD 293


>ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
           gi|462415485|gb|EMJ20222.1| hypothetical protein
           PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  149 bits (377), Expect = 1e-33
 Identities = 115/293 (39%), Positives = 144/293 (49%), Gaps = 26/293 (8%)
 Frame = +2

Query: 104 LLGATSYYSDLSAE--KLVCSAGDLPTNTNTYTSIITATAKK--------SRRPH-SVKA 250
           LL ++ YYSD++ +   L    G L  + ++  +++TA            S RP  S++A
Sbjct: 16  LLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCSSRFPSSNRPQQSIRA 75

Query: 251 LKDPHSPCSL--------------IHDHHPD-EYLVDALLLLQKSMLEKQWNLAPEXXXX 385
           LK+     S               + +   D EY V+ALLLLQKSMLEKQWNL+ E    
Sbjct: 76  LKEHVQTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKSMLEKQWNLSFEKKVL 135

Query: 386 XXXXXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXX 565
                          V CSG SAR RRM S + +       +M P               
Sbjct: 136 RDSTSKTTDKKI--PVTCSGVSARQRRMTSTKRKTFNKSTCVMHPSTNKPLRAIVSPELL 193

Query: 566 XXXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPS 745
                    Q          +S+ LL+H EVVRLS KIK GL++EE +SRLK+RLGCEPS
Sbjct: 194 ---------QNHVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLKERLGCEPS 244

Query: 746 DEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
           DE                 IEC LAREKLAMSN+RLVMSIAQRYDNMGAEM D
Sbjct: 245 DEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMAD 297


>ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Populus trichocarpa]
           gi|550316904|gb|ERP49007.1| hypothetical protein
           POPTR_0019s06020g [Populus trichocarpa]
          Length = 451

 Score =  148 bits (373), Expect = 3e-33
 Identities = 117/292 (40%), Positives = 143/292 (48%), Gaps = 25/292 (8%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITATAKKS-----------RRPHSVKA 250
           LL ++ YYSDL+ EKL        T   T T+     AKKS           R  HS+KA
Sbjct: 16  LLSSSFYYSDLT-EKLSNVNDHGITYYPTATTKNVIVAKKSSNYGPSFPSSNRNSHSIKA 74

Query: 251 LKDPHSPCSL---------IHDHHPDE-----YLVDALLLLQKSMLEKQWNLAPEXXXXX 388
           LK+     S            D   +E     Y V+ALLLLQKSMLEKQWNL+ E     
Sbjct: 75  LKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLEKQWNLSFERTNSS 134

Query: 389 XXXXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXX 568
                    ++   V CSG SAR RR+ +RR      +    + Q               
Sbjct: 135 DSTSKKN--NKKIPVTCSGVSARQRRVNNRRKN---QNQSKFMSQSSDFKFLRSVSSPDL 189

Query: 569 XXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSD 748
                  + K         VS ++L H EVVRLS  I+AGL+ E+ +SRLK+RLGCEPSD
Sbjct: 190 LQNRLKGYVKGV-------VSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSD 242

Query: 749 EXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
           E                 I+CSLAREKLAMSN+RLVMSIAQ+YDNMGAEM D
Sbjct: 243 EQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMAD 294


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
          Length = 503

 Score =  148 bits (373), Expect = 3e-33
 Identities = 112/292 (38%), Positives = 144/292 (49%), Gaps = 25/292 (8%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITATAKKS-----------RRPHSVKA 250
           LL ++ +YSD+  EKL   +    T+     +     AKKS           ++  S+KA
Sbjct: 15  LLSSSYHYSDI-IEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPTFPASNQQNQSIKA 73

Query: 251 LKDPHSPCSLIHD-----HHPDE---------YLVDALLLLQKSMLEKQWNLAPEXXXXX 388
           LK+       I D     ++ ++         Y V+ALLLLQKSMLEKQWNL+ E     
Sbjct: 74  LKEHVDDAPTIADPWFQSYNSNDLEVESSEMGYSVEALLLLQKSMLEKQWNLSFEREVLT 133

Query: 389 XXXXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXX 568
                     ++  V CSG SAR RRM ++R         M +                 
Sbjct: 134 ENSSKGKKCRKV-AVTCSGVSARQRRMNTKRKTAIKTCGAMQLKSKISPELL-------- 184

Query: 569 XXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSD 748
                   Q          VS++LLSH EVV LS KIK GL+LEE +SRLK++LGCEPSD
Sbjct: 185 --------QHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEPSD 236

Query: 749 EXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
           +                 IECSLAREKLAMSN+RLVMSIAQ+YDN+GAEM D
Sbjct: 237 DQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGD 288


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
           gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
           1 family protein [Populus trichocarpa]
          Length = 509

 Score =  148 bits (373), Expect = 3e-33
 Identities = 117/292 (40%), Positives = 143/292 (48%), Gaps = 25/292 (8%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITATAKKS-----------RRPHSVKA 250
           LL ++ YYSDL+ EKL        T   T T+     AKKS           R  HS+KA
Sbjct: 16  LLSSSFYYSDLT-EKLSNVNDHGITYYPTATTKNVIVAKKSSNYGPSFPSSNRNSHSIKA 74

Query: 251 LKDPHSPCSL---------IHDHHPDE-----YLVDALLLLQKSMLEKQWNLAPEXXXXX 388
           LK+     S            D   +E     Y V+ALLLLQKSMLEKQWNL+ E     
Sbjct: 75  LKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLEKQWNLSFERTNSS 134

Query: 389 XXXXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXX 568
                    ++   V CSG SAR RR+ +RR      +    + Q               
Sbjct: 135 DSTSKKN--NKKIPVTCSGVSARQRRVNNRRKN---QNQSKFMSQSSDFKFLRSVSSPDL 189

Query: 569 XXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSD 748
                  + K         VS ++L H EVVRLS  I+AGL+ E+ +SRLK+RLGCEPSD
Sbjct: 190 LQNRLKGYVKGV-------VSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSD 242

Query: 749 EXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
           E                 I+CSLAREKLAMSN+RLVMSIAQ+YDNMGAEM D
Sbjct: 243 EQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMAD 294


>ref|XP_004499501.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X3 [Cicer
           arietinum]
          Length = 513

 Score =  147 bits (370), Expect = 7e-33
 Identities = 92/200 (46%), Positives = 109/200 (54%)
 Frame = +2

Query: 305 YLVDALLLLQKSMLEKQWNLAPEXXXXXXXXXXXXXXSEIDEVACSGTSARWRRMESRRI 484
           Y VDALLL+QKSMLEKQW L+ E               ++  V CSG SAR RRM S+R 
Sbjct: 116 YSVDALLLMQKSMLEKQWCLSFEREVVTENSMRVKNRRKVT-VTCSGVSARQRRMNSKRK 174

Query: 485 RGGADDDEMMIPQWXXXXXXXXXXXXXXXXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVR 664
                   + +                         Q          VS++LLSH +VV+
Sbjct: 175 ISSKTGSAVQMRSAITPELL----------------QNRLKGYVKGVVSEELLSHAQVVK 218

Query: 665 LSHKIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSN 844
           LS KIKAGL+L+E +SRLK+RLGCEPSD+                 IECSLAREKL MSN
Sbjct: 219 LSQKIKAGLSLDEHKSRLKERLGCEPSDDQVATSLKISQAELRAKIIECSLAREKLTMSN 278

Query: 845 IRLVMSIAQRYDNMGAEMPD 904
           +RLVMSIAQRYDNMGAEM D
Sbjct: 279 VRLVMSIAQRYDNMGAEMAD 298


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1
           [Glycine max] gi|571478813|ref|XP_006587676.1|
           PREDICTED: RNA polymerase sigma factor sigA-like isoform
           X2 [Glycine max]
          Length = 503

 Score =  146 bits (369), Expect = 1e-32
 Identities = 111/292 (38%), Positives = 140/292 (47%), Gaps = 25/292 (8%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITATAKKS-----------RRPHSVKA 250
           LL ++ +YSD+  EKL   +    T+     +     AKKS           ++  S+KA
Sbjct: 15  LLSSSYHYSDV-IEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTPTFPASNQQNQSIKA 73

Query: 251 LKDPHSPCSLIHDHHPDE--------------YLVDALLLLQKSMLEKQWNLAPEXXXXX 388
           LK+       I D                   Y V+ALLLLQKSMLEKQWNL+ E     
Sbjct: 74  LKEHVDDAPTIADSWFQSCNSNDLEVESSEMGYSVEALLLLQKSMLEKQWNLSFEREVLT 133

Query: 389 XXXXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXX 568
                     ++  V CSG SAR RRM ++R         M +                 
Sbjct: 134 EHSSKGKKCKKV-AVTCSGVSARQRRMNTKRKTAIKTCGAMQLKSKISPELL-------- 184

Query: 569 XXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSD 748
                   Q          VS++LLSH EVV LS +IK GL+LEE +SRLK+RLGCEPSD
Sbjct: 185 --------QHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCEPSD 236

Query: 749 EXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
           +                 IEC+LAREKLAMSN+RLVMSIAQ+YDN+GAEM D
Sbjct: 237 DQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEMGD 288


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
           sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED:
           RNA polymerase sigma factor sigA-like isoform X2 [Citrus
           sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED:
           RNA polymerase sigma factor sigA-like isoform X3 [Citrus
           sinensis]
          Length = 508

 Score =  146 bits (368), Expect = 1e-32
 Identities = 105/290 (36%), Positives = 139/290 (47%), Gaps = 23/290 (7%)
 Frame = +2

Query: 104 LLGATSYYSDLSAE-KLVCSAGDLPTNTNTYTSIITATAKKSRRP---------HSVKAL 253
           LL ++ YYSD+S +   +   G   +   +  +++ A    +  P           +KAL
Sbjct: 16  LLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPSFPSSNRQTQPIKAL 75

Query: 254 KD-------------PHSPCSLIHDHHPDEYLVDALLLLQKSMLEKQWNLAPEXXXXXXX 394
           K+                P S+  +    +Y V+ALLLLQKSMLEKQWNL+ E       
Sbjct: 76  KEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLEKQWNLSFERTVLTDS 135

Query: 395 XXXXXXXSEIDEVACSGTSARWRRMESRRIRGGADDDEMMIPQWXXXXXXXXXXXXXXXX 574
                       V CSG SAR RR+ S++           +PQ                 
Sbjct: 136 PSKKTHKKV--PVTCSGVSARQRRLNSKK---KILSQNKSVPQQNGSKQLRSMISPELIQ 190

Query: 575 XXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEX 754
                + K         VS++LL+H EVVRLS KIK GL+L++ + RLK+RLGCEPS E 
Sbjct: 191 NHLKGYVKGV-------VSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQ 243

Query: 755 XXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
                           +ECSLAREKL MSN+RLVMSIAQRYDNMGA+M D
Sbjct: 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293


>ref|XP_007131471.1| hypothetical protein PHAVU_011G016400g [Phaseolus vulgaris]
           gi|561004471|gb|ESW03465.1| hypothetical protein
           PHAVU_011G016400g [Phaseolus vulgaris]
          Length = 504

 Score =  145 bits (367), Expect = 2e-32
 Identities = 110/296 (37%), Positives = 142/296 (47%), Gaps = 29/296 (9%)
 Frame = +2

Query: 104 LLGATSYYSDLSAEKLVCSAGDLPTNTNTYTSIITATAKKS-----------RRPHSVKA 250
           LL ++ +YSD+  EKL   +    T+    ++     AKKS           R+  S+K 
Sbjct: 15  LLSSSYHYSDI-IEKLSYGSDFGSTHYQIVSTKSVIVAKKSSNYTPTFPAPNRQNQSIKV 73

Query: 251 LKDPHSPCSLIHDHHPDE--------------YLVDALLLLQKSMLEKQWNLAPEXXXXX 388
           LK+     + + D                   Y V+ALLLLQKSMLEKQW+L+ E     
Sbjct: 74  LKEIVDDAATVADAWFQSLSSNDLEVESSEMGYSVEALLLLQKSMLEKQWSLSFEGEGVT 133

Query: 389 XXXXXXXXXSEIDEVACSGTSARWRRMESRRIR----GGADDDEMMIPQWXXXXXXXXXX 556
                     ++  V CSG SAR RRM ++R      GGA   +  I             
Sbjct: 134 EHSSKEKNCRKVAAVTCSGVSARQRRMNAKRKTAVKTGGAVQLKSKISPELL-------- 185

Query: 557 XXXXXXXXXPPHQKXXXXXXXYYVSQQLLSHGEVVRLSHKIKAGLALEERRSRLKQRLGC 736
                       Q          VS++LLSH +VV LS KIK GL+LEE +SR+K+RLGC
Sbjct: 186 ------------QNRLKGYVKGVVSEELLSHAQVVSLSEKIKVGLSLEEHKSRMKERLGC 233

Query: 737 EPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPD 904
           EPSD+                 +ECSLAREKLAMSN+RLVMSIAQRY+N G EM D
Sbjct: 234 EPSDDEIATSLKISSTELREKMLECSLAREKLAMSNVRLVMSIAQRYENAGTEMGD 289