BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00008981
         (933 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]   369   e-147
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]   296   e-124
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   297   e-117
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   233   1e-99
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   243   1e-99
gb|EXB32317.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       235   1e-98
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise...   244   3e-98
gb|EXB53890.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       235   3e-98
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   233   1e-97
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   233   1e-97
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   231   1e-97
gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tu...   229   2e-97
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   231   3e-97
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      226   3e-97
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu...   231   4e-97
ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Popu...   238   5e-97
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   230   9e-97
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   229   9e-97
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   229   9e-97
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      226   1e-96

>gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]
          Length = 1118

 Score =  369 bits (948), Expect(2) = e-147
 Identities = 172/206 (83%), Positives = 187/206 (90%)
 Frame = +2

Query: 2   SKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKL 181
           SK PF LENGVPFC N DLVPI+QP RGLELPYRLLFKVCCLVQ GCLPGPKLD NFY+L
Sbjct: 178 SKKPFFLENGVPFCENLDLVPIMQP-RGLELPYRLLFKVCCLVQTGCLPGPKLDDNFYRL 236

Query: 182 INPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPADDDLVHIHRM 361
           +NP+ FDI YLEQ+LEK+YY+KECCYDPHSWLIEQHQNY TFKKP+PP  +DDLVHIHR+
Sbjct: 237 LNPKSFDITYLEQLLEKLYYLKECCYDPHSWLIEQHQNYCTFKKPKPPAVNDDLVHIHRV 296

Query: 362 QVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESR 541
           QVTPTKVYF+GPE NVSNRVLR F +HIDNFLRVSFVEEDWSKMY++DLSPRGAG DE+ 
Sbjct: 297 QVTPTKVYFHGPEANVSNRVLRNFHDHIDNFLRVSFVEEDWSKMYASDLSPRGAGGDENT 356

Query: 542 RTKLYERTLSTLRNGIRIGSKKFEFL 619
           RTKLYER LSTLRNGI IGSKKFEFL
Sbjct: 357 RTKLYERVLSTLRNGITIGSKKFEFL 382



 Score =  180 bits (457), Expect(2) = e-147
 Identities = 90/101 (89%), Positives = 94/101 (93%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR+WMGDFSSIRNVAKYAARLGQSF SSTETLSVAQ EV++IPDVEVV NGTTYIFSDG
Sbjct: 407 DIRRWMGDFSSIRNVAKYAARLGQSFGSSTETLSVAQNEVEKIPDVEVVTNGTTYIFSDG 466

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKISVDFA +VA KCGLK  IPSAFQIRYGGYKGVVAIDP
Sbjct: 467 IGKISVDFARRVAIKCGLKSNIPSAFQIRYGGYKGVVAIDP 507


>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
          Length = 1101

 Score =  296 bits (759), Expect(2) = e-124
 Identities = 139/209 (66%), Positives = 169/209 (80%), Gaps = 3/209 (1%)
 Frame = +2

Query: 2   SKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKL 181
           S+ PF L NG PFCGN  LVPI+QPPRGLELPY+LLFKVC LVQ GCLPG KLD  F++ 
Sbjct: 241 SEEPFQLVNGAPFCGNLPLVPIVQPPRGLELPYKLLFKVCSLVQTGCLPGMKLDTEFFQC 300

Query: 182 INPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKK-PRPP--PADDDLVHI 352
           +NP ++ I Y+E  L+K+YY+KECCYDP +WL EQ++ Y+TF++ P+PP    DD LV+I
Sbjct: 301 LNPRRYAIRYIEHALDKLYYIKECCYDPVAWLREQYRKYQTFEELPKPPTISLDDGLVYI 360

Query: 353 HRMQVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDD 532
           HR+QVTPT+VYF GPEVN+SNRVLRQF  HIDNFLRVSF++E+W KMYS DLSP+ A   
Sbjct: 361 HRVQVTPTRVYFAGPEVNMSNRVLRQFSAHIDNFLRVSFIDEEWDKMYSTDLSPKVATGV 420

Query: 533 ESRRTKLYERTLSTLRNGIRIGSKKFEFL 619
            + RTKLYER LSTLRNGI IG K+F+FL
Sbjct: 421 GNGRTKLYERVLSTLRNGITIGEKRFQFL 449



 Score =  176 bits (446), Expect(2) = e-124
 Identities = 86/101 (85%), Positives = 94/101 (93%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR+WMGDFSSIRNVAKYAARLGQSFSSSTETL VAQ EV+RIPDVEVVR+GTTYIFSDG
Sbjct: 474 DIRRWMGDFSSIRNVAKYAARLGQSFSSSTETLKVAQYEVERIPDVEVVRDGTTYIFSDG 533

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA KCG++  +PSAFQIRYGGYKGVVA+DP
Sbjct: 534 IGKISSDFARRVATKCGIRDGVPSAFQIRYGGYKGVVAVDP 574


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  297 bits (761), Expect(2) = e-117
 Identities = 137/209 (65%), Positives = 171/209 (81%), Gaps = 3/209 (1%)
 Frame = +2

Query: 2   SKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKL 181
           S++PF LE GVPF  N DLVPI++PP  ++LPY LLFKVC LVQ GCLPGPKLD++F+ L
Sbjct: 238 SETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPGPKLDRSFFDL 297

Query: 182 INPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHI 352
           +NP K DI Y+E  LEK+YY+KECCY+P +WL EQ++ YRT K+    PA   DD LV++
Sbjct: 298 VNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPAICLDDGLVYV 357

Query: 353 HRMQVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDD 532
           HR+QVTPT+VYF GPEVNVSNRVLR +R++IDNFLRVSFV+E+W KMYS DLSPR A  D
Sbjct: 358 HRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYSTDLSPRVAAGD 417

Query: 533 ESRRTKLYERTLSTLRNGIRIGSKKFEFL 619
           E++RTKLYER +S LR+G+RIG +KF+FL
Sbjct: 418 ENKRTKLYERVISILRDGVRIGDRKFDFL 446



 Score =  151 bits (382), Expect(2) = e-117
 Identities = 75/100 (75%), Positives = 85/100 (85%)
 Frame = +1

Query: 634 IRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDGI 813
           IR+WMGDFSSIRNVAKYAARLGQSF SSTETLSV++ E++ I DV   +NGT Y FSDGI
Sbjct: 472 IREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDV---KNGTEYTFSDGI 528

Query: 814 GKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           GKIS DFA +VA KCG++   PSAFQIRYGGYKGVVA+DP
Sbjct: 529 GKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDP 568


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
           family protein [Populus trichocarpa]
          Length = 1133

 Score =  233 bits (594), Expect(2) = 1e-99
 Identities = 112/209 (53%), Positives = 149/209 (71%), Gaps = 3/209 (1%)
 Frame = +2

Query: 2   SKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKL 181
           ++  F LE+G+ F  N DLVPI+ P  G+ LPY +LF+V  LVQNGCL G  LD  FY+L
Sbjct: 248 NEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRL 307

Query: 182 INPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHI 352
           ++P +  +  +E  LEK+Y++KECCY+P  W  EQ++ Y T   P   P    D  LV++
Sbjct: 308 VDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYV 367

Query: 353 HRMQVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDD 532
           +++Q+TP KV+F GPEVNVSNRVLRQ+R  IDNFLRVSFV+E+  K++S D+SPR +  +
Sbjct: 368 YKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSRN 427

Query: 533 ESRRTKLYERTLSTLRNGIRIGSKKFEFL 619
           E RRT +Y R LSTL+NGI IG KKFEFL
Sbjct: 428 ELRRTAIYNRILSTLQNGIVIGDKKFEFL 456



 Score =  158 bits (399), Expect(2) = 1e-99
 Identities = 76/108 (70%), Positives = 86/108 (79%)
 Frame = +1

Query: 610 RVSXXXXDIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGT 789
           R+     DIR WMG F  IRNVA+YAARLGQSF SSTETLSV+  E++ IPD+EV R GT
Sbjct: 474 RLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGT 533

Query: 790 TYIFSDGIGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
            Y+FSDGIGKIS +FA KVA KCG KG+ PSAFQIRY GYKGVVA+DP
Sbjct: 534 RYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDP 581


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  243 bits (620), Expect(2) = 1e-99
 Identities = 115/211 (54%), Positives = 154/211 (72%), Gaps = 5/211 (2%)
 Frame = +2

Query: 2   SKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKL 181
           S+  F LE G  +  + DLVPI+ PP G+ LPY +LFK+  LVQNGC+ GP LD NFY+L
Sbjct: 250 SEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRL 309

Query: 182 INPEK--FDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLV 346
           ++P +    I+ +E  L+K+Y++KECCY+P  WL +Q++ Y T +     PA   DD LV
Sbjct: 310 VDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLV 369

Query: 347 HIHRMQVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAG 526
           ++HR+QVTP++VYF GPE+NVSNRVLR FR  IDNFLR+SF++ED  K++S DLSPRG+ 
Sbjct: 370 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 429

Query: 527 DDESRRTKLYERTLSTLRNGIRIGSKKFEFL 619
             +  RT++Y R LSTLRNGI IG +KFEFL
Sbjct: 430 ATDITRTRIYTRILSTLRNGILIGDRKFEFL 460



 Score =  147 bits (372), Expect(2) = 1e-99
 Identities = 72/101 (71%), Positives = 83/101 (82%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           +IR+WMG+F  IRNVAKYAARLGQSFSSS ETLSV  +E++ IPDV++    T Y+FSDG
Sbjct: 485 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 544

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGK+S +FA KVA KCGLK   PSAFQIRYGGYKGVVA DP
Sbjct: 545 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP 585


>gb|EXB32317.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 862

 Score =  235 bits (599), Expect(2) = 1e-98
 Identities = 112/205 (54%), Positives = 151/205 (73%), Gaps = 3/205 (1%)
 Frame = +2

Query: 14  FSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINPE 193
           FSL+ G PF  + DLVP++ PP+G+ LPY++LFKV  LVQ+GCLP   LD NF++L++P 
Sbjct: 233 FSLQQGCPFSSSSDLVPMVVPPKGIILPYKILFKVNSLVQHGCLPAEVLDLNFFRLVDPS 292

Query: 194 KFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKK-PRPPPA--DDDLVHIHRMQ 364
           +  +  +E  L+K+Y++K+CCYDP  WL +Q+  Y T  + P+ P    +D LV++HR+Q
Sbjct: 293 RIPLECIESALDKLYHLKDCCYDPLRWLKKQYIKYNTSGQIPKMPTIALEDGLVYVHRVQ 352

Query: 365 VTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESRR 544
           VTPTKVYF GPE+N+SNRVLR +   IDNFLRVSFV+E+  K+ S DL  RG+  +  RR
Sbjct: 353 VTPTKVYFCGPEINLSNRVLRNYPKDIDNFLRVSFVDENLDKLSSTDLCARGSSANGKRR 412

Query: 545 TKLYERTLSTLRNGIRIGSKKFEFL 619
           T+LY+R L TLRNGI IG KKFEFL
Sbjct: 413 TRLYDRILFTLRNGILIGDKKFEFL 437



 Score =  153 bits (386), Expect(2) = 1e-98
 Identities = 73/101 (72%), Positives = 83/101 (82%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMGDF  I+NVA+YAARLGQSF SS ET  V ++EV+ IPD+EV R+G  Y FSDG
Sbjct: 462 DIRNWMGDFHDIKNVARYAARLGQSFGSSHETFRVGRDEVELIPDIEVKRDGKNYCFSDG 521

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA+KCGL  Y PSAFQIRYGGYKGVVA+DP
Sbjct: 522 IGKISEDFAKEVAKKCGLNRYTPSAFQIRYGGYKGVVAVDP 562


>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
          Length = 1095

 Score =  244 bits (623), Expect(2) = 3e-98
 Identities = 112/203 (55%), Positives = 150/203 (73%), Gaps = 1/203 (0%)
 Frame = +2

Query: 14  FSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINPE 193
           F L+ G  F  N  L PI+ PPRGL LPY ++FK+C LVQ GC+PGP+LD NFY+++NP+
Sbjct: 241 FHLQEGYSFSQNSVLAPIVGPPRGLSLPYNIVFKICSLVQMGCIPGPELDANFYRMVNPQ 300

Query: 194 KFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPP-PADDDLVHIHRMQVT 370
             DI Y+E  LEKI+Y+KECCYDP  WL  Q++ Y+T K   P    +  LV++ R+Q+T
Sbjct: 301 LVDIRYIEHALEKIFYLKECCYDPVKWLESQYRRYQTSKPSSPTISLEGGLVYVRRVQIT 360

Query: 371 PTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESRRTK 550
           P++VYF GPE+NVSNRVLRQ+++ ID+FLRVSFV+EDW K++S  LS +     E  +T+
Sbjct: 361 PSRVYFTGPEINVSNRVLRQYKDRIDDFLRVSFVDEDWDKLFSLTLSSK----TEIGKTR 416

Query: 551 LYERTLSTLRNGIRIGSKKFEFL 619
           +YER LS LR GIRIG K+F+FL
Sbjct: 417 IYERILSVLREGIRIGDKRFDFL 439



 Score =  142 bits (358), Expect(2) = 3e-98
 Identities = 70/101 (69%), Positives = 79/101 (78%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR+WMGDF SIRNVAKYAARLGQSF SSTETL+V ++E   IPD+       TY FSDG
Sbjct: 464 DIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLTVQRDEYLLIPDITRQTGDKTYTFSDG 523

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA KC     +PSAFQIRYGG+KGVVA+DP
Sbjct: 524 IGKISADFARRVAAKCRFTHRVPSAFQIRYGGFKGVVAVDP 564


>gb|EXB53890.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 885

 Score =  235 bits (600), Expect(2) = 3e-98
 Identities = 111/205 (54%), Positives = 148/205 (72%), Gaps = 3/205 (1%)
 Frame = +2

Query: 14  FSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINPE 193
           FSL+ G PF  + DLVP + P +G+ LPY++LFKV  LVQ+GCLP   LD  F++L++P 
Sbjct: 57  FSLQQGSPFSSSSDLVPTVVPSQGINLPYKILFKVNSLVQHGCLPAKALDLKFFRLVDPS 116

Query: 194 KFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRT---FKKPRPPPADDDLVHIHRMQ 364
           +  + Y+E  LEK++++K+CCY+P  WL +Q+  Y       K R    DD LV++HR+Q
Sbjct: 117 RIQLEYIESALEKLHHLKDCCYNPLRWLKKQYIKYNRSGQIPKLRTITLDDGLVYVHRVQ 176

Query: 365 VTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESRR 544
           VTPTKVYF GPE+N+SNRVLR +   I+NFLRVSFV+ED  K+ S DLS  G+ ++  RR
Sbjct: 177 VTPTKVYFCGPEINLSNRVLRNYHEDINNFLRVSFVDEDLDKLSSTDLSAHGSSENGKRR 236

Query: 545 TKLYERTLSTLRNGIRIGSKKFEFL 619
           T+LY+R LSTLRNGI IG KKFEFL
Sbjct: 237 TRLYDRILSTLRNGILIGDKKFEFL 261



 Score =  151 bits (381), Expect(2) = 3e-98
 Identities = 72/101 (71%), Positives = 83/101 (82%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR+WMGDF  I+NVAKYAARLGQSF SS ET  V + EV+ IPD++V R+G  Y FSDG
Sbjct: 286 DIRKWMGDFRCIKNVAKYAARLGQSFGSSHETFRVGRHEVELIPDIQVERDGKNYCFSDG 345

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA+KCGL  + PSAFQIRYGGYKGVVA+DP
Sbjct: 346 IGKISEDFAREVAKKCGLNRFTPSAFQIRYGGYKGVVAVDP 386


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  233 bits (594), Expect(2) = 1e-97
 Identities = 113/206 (54%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
 Frame = +2

Query: 17  SLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINP 190
           +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP LD  F++L++P
Sbjct: 207 TLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALDVYFFRLVDP 266

Query: 191 EKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHIHRM 361
           ++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+   DD LV++ R+
Sbjct: 267 QRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRV 326

Query: 362 QVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESR 541
            VTP KVYF GPEVNVSNRVLR +   IDNFLRVSFV+E+W K+YS DL P+ A      
Sbjct: 327 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPK-ASTGNGI 385

Query: 542 RTKLYERTLSTLRNGIRIGSKKFEFL 619
           RT +YER LSTLR G  IG KKFEFL
Sbjct: 386 RTNIYERILSTLRKGFVIGDKKFEFL 411



 Score =  151 bits (382), Expect(2) = 1e-97
 Identities = 76/101 (75%), Positives = 87/101 (86%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMGDFS I+NVAKYAARLGQSF SS ETLSV + E++ IPDV+V  +GT+Y+FSDG
Sbjct: 436 DIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTSYVFSDG 493

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA KCGL+ Y PSAFQIRYGGYKGVVA+DP
Sbjct: 494 IGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDP 533


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  233 bits (594), Expect(2) = 1e-97
 Identities = 113/206 (54%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
 Frame = +2

Query: 17  SLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINP 190
           +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP LD  F++L++P
Sbjct: 233 TLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALDVYFFRLVDP 292

Query: 191 EKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHIHRM 361
           ++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+   DD LV++ R+
Sbjct: 293 QRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRV 352

Query: 362 QVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESR 541
            VTP KVYF GPEVNVSNRVLR +   IDNFLRVSFV+E+W K+YS DL P+ A      
Sbjct: 353 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPK-ASTGNGI 411

Query: 542 RTKLYERTLSTLRNGIRIGSKKFEFL 619
           RT +YER LSTLR G  IG KKFEFL
Sbjct: 412 RTNIYERILSTLRKGFVIGDKKFEFL 437



 Score =  151 bits (382), Expect(2) = 1e-97
 Identities = 76/101 (75%), Positives = 87/101 (86%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMGDFS I+NVAKYAARLGQSF SS ETLSV + E++ IPDV+V  +GT+Y+FSDG
Sbjct: 462 DIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTSYVFSDG 519

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA KCGL+ Y PSAFQIRYGGYKGVVA+DP
Sbjct: 520 IGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDP 559


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  231 bits (590), Expect(2) = 1e-97
 Identities = 110/209 (52%), Positives = 151/209 (72%), Gaps = 3/209 (1%)
 Frame = +2

Query: 2   SKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKL 181
           S+  F LE+G  +  N +LVPI+ P  G++LPY +LFK+  LVQNGC+PGP LD NFY+L
Sbjct: 247 SEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPALDANFYRL 306

Query: 182 INPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHI 352
           +NP + D  Y++  LEK+YY+KECC++P  WL+EQ++ Y   KK    P    DD LV++
Sbjct: 307 VNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISLDDGLVNV 366

Query: 353 HRMQVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDD 532
            R+Q+TP++VYF GPE+NVSNRVLR F + IDNFLR++FV+E+  K++S DL  R     
Sbjct: 367 RRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLLTR----- 421

Query: 533 ESRRTKLYERTLSTLRNGIRIGSKKFEFL 619
            +R T++Y R LSTL+NGI IG K+FEFL
Sbjct: 422 -NRITEIYGRILSTLKNGIVIGDKQFEFL 449



 Score =  152 bits (385), Expect(2) = 1e-97
 Identities = 75/101 (74%), Positives = 85/101 (84%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMG+FS IRNVAKYAARLGQSFSSSTETLSVA++E++ I DVE+ R+G  Y+FSDG
Sbjct: 474 DIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSDG 533

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS  FA KVA KC L G  PSAFQIR GG+KGVVA+DP
Sbjct: 534 IGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDP 574


>gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
          Length = 1050

 Score =  229 bits (585), Expect(2) = 2e-97
 Identities = 111/206 (53%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
 Frame = +2

Query: 17  SLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINP 190
           +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP L+  F++L++P
Sbjct: 89  TLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDP 148

Query: 191 EKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHIHRM 361
           ++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+   DD LV++ R+
Sbjct: 149 QRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRV 208

Query: 362 QVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESR 541
            VTP KVYF GPEVNVSNRVLR +   IDNFLRVSFV+E+W K+YS +L P+ A      
Sbjct: 209 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPK-ASTGNGI 267

Query: 542 RTKLYERTLSTLRNGIRIGSKKFEFL 619
           RT +YER LSTLR G  IG KKFEFL
Sbjct: 268 RTNIYERILSTLRKGFVIGDKKFEFL 293



 Score =  154 bits (388), Expect(2) = 2e-97
 Identities = 77/101 (76%), Positives = 88/101 (87%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMGDFS I+NVAKYAARLGQSF SSTETLSV + E++ IPDV+V  +GT+Y+FSDG
Sbjct: 318 DIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKV--HGTSYVFSDG 375

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA KCGL+ Y PSAFQIRYGGYKGVVA+DP
Sbjct: 376 IGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDP 415


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
           tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
           tuberosum]
          Length = 1115

 Score =  231 bits (589), Expect(2) = 3e-97
 Identities = 112/206 (54%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
 Frame = +2

Query: 17  SLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINP 190
           +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP L+  F++L++P
Sbjct: 241 TLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDP 300

Query: 191 EKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHIHRM 361
           ++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+   DD LV++ R+
Sbjct: 301 QRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRV 360

Query: 362 QVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESR 541
            VTP KVYF GPEVNVSNRVLR +   IDNFLRVSFV+E+W K+YS DL P+ A      
Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPK-ASTGNGI 419

Query: 542 RTKLYERTLSTLRNGIRIGSKKFEFL 619
           RT +YER LSTLR G  IG KKFEFL
Sbjct: 420 RTNIYERILSTLRKGFVIGDKKFEFL 445



 Score =  152 bits (383), Expect(2) = 3e-97
 Identities = 76/101 (75%), Positives = 88/101 (87%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMGDFS I+NVAKYAARLGQSF SSTETLSV + E++ IPDV+V  +GT+Y+FSDG
Sbjct: 470 DIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKV--HGTSYVFSDG 527

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA KCGL+ + PSAFQIRYGGYKGVVA+DP
Sbjct: 528 IGKISADFARRVASKCGLQ-HTPSAFQIRYGGYKGVVAVDP 567


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  226 bits (575), Expect(2) = 3e-97
 Identities = 106/203 (52%), Positives = 149/203 (73%), Gaps = 3/203 (1%)
 Frame = +2

Query: 20  LENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINPEKF 199
           LE+G  +  N  LVPI+ P R ++LP+ +LFKV  LVQNGC+PGP LD  FY+L++P + 
Sbjct: 253 LESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRM 312

Query: 200 DIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHIHRMQVT 370
              Y++  LEK+YY++ECCY+P  WL E+++N+   +K +  P    D+ LV++ R+Q+T
Sbjct: 313 HKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQIT 372

Query: 371 PTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESRRTK 550
           P++VYF GPE+NVSNRVLRQF N IDNFLR+SFV+E+  K++S ++  RG      RRT 
Sbjct: 373 PSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQARG------RRTG 426

Query: 551 LYERTLSTLRNGIRIGSKKFEFL 619
           +Y+R LSTLRNGI IG+K+FEFL
Sbjct: 427 IYKRILSTLRNGIVIGNKRFEFL 449



 Score =  157 bits (397), Expect(2) = 3e-97
 Identities = 75/101 (74%), Positives = 88/101 (87%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMG+FS IRNVAKYAARLGQSFSSSTETLSV+++E+  IPD+E++++G  Y+FSDG
Sbjct: 474 DIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDG 533

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS +FA KVA KC LKG  PSAFQIR GG+KGVVAIDP
Sbjct: 534 IGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDP 574


>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 841

 Score =  231 bits (589), Expect(2) = 4e-97
 Identities = 112/206 (54%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
 Frame = +2

Query: 17  SLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINP 190
           +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP L+  F++L++P
Sbjct: 241 TLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDP 300

Query: 191 EKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHIHRM 361
           ++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+   DD LV++ R+
Sbjct: 301 QRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRV 360

Query: 362 QVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESR 541
            VTP KVYF GPEVNVSNRVLR +   IDNFLRVSFV+E+W K+YS DL P+ A      
Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPK-ASTGNGI 419

Query: 542 RTKLYERTLSTLRNGIRIGSKKFEFL 619
           RT +YER LSTLR G  IG KKFEFL
Sbjct: 420 RTNIYERILSTLRKGFVIGDKKFEFL 445



 Score =  151 bits (382), Expect(2) = 4e-97
 Identities = 76/101 (75%), Positives = 87/101 (86%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMGDFS I+NVAKYAARLGQSF SS ETLSV + E++ IPDV+V  +GT+Y+FSDG
Sbjct: 470 DIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTSYVFSDG 527

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA KCGL+ Y PSAFQIRYGGYKGVVA+DP
Sbjct: 528 IGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDP 567


>ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
           gi|550329580|gb|EEF02020.2| hypothetical protein
           POPTR_0010s11560g [Populus trichocarpa]
          Length = 1119

 Score =  238 bits (606), Expect(2) = 5e-97
 Identities = 119/207 (57%), Positives = 149/207 (71%), Gaps = 5/207 (2%)
 Frame = +2

Query: 14  FSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINPE 193
           F LE G  FC   DLVPI+   +G ELPY ++FKV  LVQ+GCLPGP LD  F++LINP 
Sbjct: 247 FILEKGSTFCCKSDLVPILSAAQGSELPYDIVFKVNSLVQHGCLPGPALDARFFRLINPS 306

Query: 194 KFDIA--YLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHIHR 358
           K  IA  Y++  LEK+ ++KECCYDP  WL EQ+Q Y T  +   PPA   DD LV + R
Sbjct: 307 KIRIAHAYIQHALEKLSHLKECCYDPARWLREQYQKYLTTGRLPTPPAIAVDDGLVFLRR 366

Query: 359 MQVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDES 538
           +Q+TPTK+YF GP+VN+SNRVLR++   IDNFLRVSFV+ED  K++SA++SPR     E 
Sbjct: 367 VQITPTKLYFCGPDVNLSNRVLRKYPGDIDNFLRVSFVDEDLDKLFSANISPRTFSAIEG 426

Query: 539 RRTKLYERTLSTLRNGIRIGSKKFEFL 619
           R+T +Y+R LS  RNGI IGSKKFEFL
Sbjct: 427 RQTNIYQRILSVQRNGITIGSKKFEFL 453



 Score =  144 bits (364), Expect(2) = 5e-97
 Identities = 66/101 (65%), Positives = 81/101 (80%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR+WMGDF  I+NVAKYAARLGQSFSSS E+ ++ + E++ IPD+EV   G  Y+FSDG
Sbjct: 478 DIREWMGDFREIKNVAKYAARLGQSFSSSRESFNIDRHEIEIIPDIEVKSGGVNYVFSDG 537

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS + A  +ARK G + + PSAFQIRYGGYKGVVA+DP
Sbjct: 538 IGKISAELADSIARKLGFRSFTPSAFQIRYGGYKGVVAVDP 578


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  230 bits (586), Expect(2) = 9e-97
 Identities = 111/206 (53%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
 Frame = +2

Query: 17  SLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINP 190
           +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP L+ NF++L++P
Sbjct: 241 TLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDP 300

Query: 191 EKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHIHRM 361
           ++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+   DD LV++ R+
Sbjct: 301 QRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRV 360

Query: 362 QVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESR 541
            VTP KVYF GPEVNVSNRVLR +   IDNFLRVSFV+E+W K+YS DL P+ A      
Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPK-ASTGNGI 419

Query: 542 RTKLYERTLSTLRNGIRIGSKKFEFL 619
           RT +Y R LSTL+ G  IG KKFEFL
Sbjct: 420 RTNIYVRILSTLQKGFVIGDKKFEFL 445



 Score =  151 bits (382), Expect(2) = 9e-97
 Identities = 76/101 (75%), Positives = 87/101 (86%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMGDFS I+NVAKYAARLGQSF SS ETLSV + E++ IPDV+V  +GT+Y+FSDG
Sbjct: 470 DIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKV--HGTSYVFSDG 527

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA KCGL+ Y PSAFQIRYGGYKGVVA+DP
Sbjct: 528 IGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDP 567


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  229 bits (585), Expect(2) = 9e-97
 Identities = 111/206 (53%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
 Frame = +2

Query: 17  SLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINP 190
           +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP L+  F++L++P
Sbjct: 241 TLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDP 300

Query: 191 EKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHIHRM 361
           ++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+   DD LV++ R+
Sbjct: 301 QRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRV 360

Query: 362 QVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESR 541
            VTP KVYF GPEVNVSNRVLR +   IDNFLRVSFV+E+W K+YS +L P+ A      
Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPK-ASTGNGI 419

Query: 542 RTKLYERTLSTLRNGIRIGSKKFEFL 619
           RT +YER LSTLR G  IG KKFEFL
Sbjct: 420 RTNIYERILSTLRKGFVIGDKKFEFL 445



 Score =  152 bits (383), Expect(2) = 9e-97
 Identities = 76/101 (75%), Positives = 87/101 (86%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMGDFS I+NVAKYAARLGQSF SS ETLSV + E++ IPDV+V  +GT+Y+FSDG
Sbjct: 470 DIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDG 527

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA KCGL+ Y PSAFQIRYGGYKGVVA+DP
Sbjct: 528 IGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDP 567


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  229 bits (585), Expect(2) = 9e-97
 Identities = 111/206 (53%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
 Frame = +2

Query: 17  SLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINP 190
           +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP L+  F++L++P
Sbjct: 89  TLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDP 148

Query: 191 EKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHIHRM 361
           ++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+   DD LV++ R+
Sbjct: 149 QRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRV 208

Query: 362 QVTPTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESR 541
            VTP KVYF GPEVNVSNRVLR +   IDNFLRVSFV+E+W K+YS +L P+ A      
Sbjct: 209 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPK-ASTGNGI 267

Query: 542 RTKLYERTLSTLRNGIRIGSKKFEFL 619
           RT +YER LSTLR G  IG KKFEFL
Sbjct: 268 RTNIYERILSTLRKGFVIGDKKFEFL 293



 Score =  152 bits (383), Expect(2) = 9e-97
 Identities = 76/101 (75%), Positives = 87/101 (86%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMGDFS I+NVAKYAARLGQSF SS ETLSV + E++ IPDV+V  +GT+Y+FSDG
Sbjct: 318 DIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDG 375

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS DFA +VA KCGL+ Y PSAFQIRYGGYKGVVA+DP
Sbjct: 376 IGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDP 415


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  226 bits (575), Expect(2) = 1e-96
 Identities = 106/203 (52%), Positives = 149/203 (73%), Gaps = 3/203 (1%)
 Frame = +2

Query: 20  LENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINPEKF 199
           LE+G  +  N  LVPI+ P R ++LP+ +LFKV  LVQNGC+PGP LD  FY+L++P + 
Sbjct: 253 LESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRM 312

Query: 200 DIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---DDDLVHIHRMQVT 370
              Y++  LEK+YY++ECCY+P  WL E+++N+   +K +  P    D+ LV++ R+Q+T
Sbjct: 313 HKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQIT 372

Query: 371 PTKVYFYGPEVNVSNRVLRQFRNHIDNFLRVSFVEEDWSKMYSADLSPRGAGDDESRRTK 550
           P++VYF GPE+NVSNRVLRQF N IDNFLR+SFV+E+  K++S ++  RG      RRT 
Sbjct: 373 PSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQARG------RRTG 426

Query: 551 LYERTLSTLRNGIRIGSKKFEFL 619
           +Y+R LSTLRNGI IG+K+FEFL
Sbjct: 427 IYKRILSTLRNGIVIGNKRFEFL 449



 Score =  155 bits (392), Expect(2) = 1e-96
 Identities = 74/101 (73%), Positives = 87/101 (86%)
 Frame = +1

Query: 631 DIRQWMGDFSSIRNVAKYAARLGQSFSSSTETLSVAQEEVKRIPDVEVVRNGTTYIFSDG 810
           DIR WMG+FS IRNVAKYAARLGQSFSSSTETLSV+++E+  IPD+E++++G  Y+F DG
Sbjct: 474 DIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDG 533

Query: 811 IGKISVDFAHKVARKCGLKGYIPSAFQIRYGGYKGVVAIDP 933
           IGKIS +FA KVA KC LKG  PSAFQIR GG+KGVVAIDP
Sbjct: 534 IGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDP 574