BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00007855
         (743 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]   377   e-102
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus...   320   4e-85
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     314   2e-83
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     310   3e-82
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    310   3e-82
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    310   4e-82
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   306   5e-81
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   305   1e-80
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   287   2e-75
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...   284   2e-74
gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlise...   278   2e-72
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   278   2e-72
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   276   4e-72
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   271   2e-70
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   270   4e-70
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   270   4e-70
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   270   5e-70
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   268   1e-69
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   265   2e-68
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...   258   1e-66

>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
          Length = 1195

 Score =  377 bits (969), Expect = e-102
 Identities = 178/230 (77%), Positives = 209/230 (90%)
 Frame = +3

Query: 54  KIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTE 233
           ++GDNDMIVTQIS+GGL+  ++AK+L DYLED VGLVWRCRVKTSSTPQDSYPN+EI+TE
Sbjct: 3   QVGDNDMIVTQISIGGLEGYVTAKLLSDYLEDNVGLVWRCRVKTSSTPQDSYPNYEIDTE 62

Query: 234 SVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMR 413
           +VQRK EYEKVEPHAFVHFA+A+S+A A++LS +G L+LG  I+KV  GPQNPYRL E R
Sbjct: 63  NVQRKGEYEKVEPHAFVHFAVAQSSASAMKLSGAGDLVLGRHILKVGLGPQNPYRLRERR 122

Query: 414 RTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRG 593
           RTTTP+K+PGV++EIG ++SRDEFVVGWRGP+TG DFLVDPFNGTCQI FT+DTAFSI+G
Sbjct: 123 RTTTPYKVPGVTVEIGAMKSRDEFVVGWRGPRTGLDFLVDPFNGTCQILFTKDTAFSIKG 182

Query: 594 EARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
           EARPAVIKCNFK+EFVPREIN+IKRY DF+SVV+L  LASSP LYYRTAD
Sbjct: 183 EARPAVIKCNFKMEFVPREINQIKRYKDFSSVVVLFQLASSPLLYYRTAD 232


>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
          Length = 1196

 Score =  320 bits (819), Expect = 4e-85
 Identities = 146/233 (62%), Positives = 190/233 (81%)
 Frame = +3

Query: 45  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 224
           MG +I D +MIVTQIS+GGL  N++AKML+DY ED +GLVWRCR+KTSSTP +SYPN+EI
Sbjct: 1   MGSEISDREMIVTQISVGGLGSNVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEI 60

Query: 225 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 404
           + +S ++  +Y K++P+AFVHF +A+SA +A+E +  G L    +++KVS GPQNPYRLS
Sbjct: 61  DIDSAKQSDDYVKIQPYAFVHFVVAESANKAVEAASRGDLRFAGKLLKVSLGPQNPYRLS 120

Query: 405 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 584
           E RRTTTP+K+    +EIG LRSR+E VVGWRGP++G DFLVDPF+GTC++H  RDTAF 
Sbjct: 121 ERRRTTTPYKLSDAFVEIGSLRSREELVVGWRGPRSGVDFLVDPFSGTCKLHIKRDTAFC 180

Query: 585 IRGEARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
            +GEAR A+IKC+F+IEF PREI EIK Y DF+S++IL+ LASSP +YYRTAD
Sbjct: 181 FKGEARSAIIKCDFRIEFFPREIIEIKHYRDFSSLIILIQLASSPLIYYRTAD 233


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  314 bits (804), Expect = 2e-83
 Identities = 151/233 (64%), Positives = 188/233 (80%)
 Frame = +3

Query: 45  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 224
           MG +  + D++VTQIS+GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP F++
Sbjct: 1   MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 225 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 404
           + E VQR  +YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61  DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 405 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 584
           + RRTT PFK   VSIE+GVL S+D+FVVGWRGP+TG DFLVDPFNG C+I FT+DTAFS
Sbjct: 121 QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 585 IRGEARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
            RGEAR A+IKCNFKIEF+ REINEIK+  DFTS+VILL LASSP ++YRTAD
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTAD 233


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  310 bits (795), Expect = 3e-82
 Identities = 149/233 (63%), Positives = 187/233 (80%)
 Frame = +3

Query: 45  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 224
           MG +  + +++VTQIS+GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP ++I
Sbjct: 1   MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 225 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 404
           + E VQR   YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61  DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 405 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 584
           + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 585 IRGEARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
            RGEAR A+IKCNFKIEF+ REINEIK+  DFTS+VIL  LASSP ++YRTAD
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTAD 233


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  310 bits (794), Expect = 3e-82
 Identities = 148/233 (63%), Positives = 187/233 (80%)
 Frame = +3

Query: 45  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 224
           MG +  + D++VTQIS+GG D +++AKML +YLE++VG VWRCR+K S+TP DSYP ++I
Sbjct: 1   MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60

Query: 225 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 404
           + E V R  +YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61  DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 405 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 584
           + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 585 IRGEARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
            RGEAR A+IKCNFKIEF+ REINEIK+  DFTS+VIL  LASSP ++YRTAD
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTAD 233


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  310 bits (793), Expect = 4e-82
 Identities = 149/233 (63%), Positives = 186/233 (79%)
 Frame = +3

Query: 45  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 224
           MG +  + +++VTQIS GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP ++I
Sbjct: 1   MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 225 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 404
           + E VQR   YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61  DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 405 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 584
           + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNGTC+I FT+DTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180

Query: 585 IRGEARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
            RGEAR A+IKCNFKIEF+ REINEIK+  DFTS+VILL LASSP ++YRTAD
Sbjct: 181 FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTAD 233


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  306 bits (784), Expect = 5e-81
 Identities = 147/233 (63%), Positives = 185/233 (79%)
 Frame = +3

Query: 45  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 224
           MG +  + +++VTQIS+GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP ++I
Sbjct: 1   MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 225 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 404
           + E VQR   YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61  DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120

Query: 405 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 584
           + RRTT PFK   VS+E+GVL S+ +FVVGWRGP+TG DFLVDPFNGTC+I FT+DT FS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180

Query: 585 IRGEARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
            RGEAR A+IKCNFKIEF+ REINEIK+  DF S+VILL LASSP ++YRTAD
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTAD 233


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  305 bits (780), Expect = 1e-80
 Identities = 144/233 (61%), Positives = 186/233 (79%)
 Frame = +3

Query: 45  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 224
           MG +  + D++VTQIS+GG D +++AKML +YLE++VG VWRCR+K S+TP DSYP +++
Sbjct: 1   MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60

Query: 225 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 404
           +   V R  +YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61  DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120

Query: 405 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 584
           + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNG C+I FT+DTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180

Query: 585 IRGEARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
            RGEA+ A+IKCNFKIEF+ REINEIK++ DFTS+VILL LASSP ++YRTAD
Sbjct: 181 FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTAD 233


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
           tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
           tuberosum]
          Length = 1198

 Score =  287 bits (735), Expect = 2e-75
 Identities = 138/233 (59%), Positives = 176/233 (75%)
 Frame = +3

Query: 45  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 224
           MG +  + D++VTQIS+GG   +++AKML + LED+VG VWRCR+KTSSTP DSYP ++I
Sbjct: 1   MGSEGSEKDLVVTQISVGGFSNDVNAKMLSECLEDQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 225 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 404
           + E+V+R   Y KVEPHAFVHFA ++SA  AL  +    L L  + +KVS GP+NP+ ++
Sbjct: 61  DVENVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENPFNMN 120

Query: 405 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 584
           + RRT  PFK   V +EIGVL S D+FVVGWRGP +G +FLVDPFNGTC+I FTRDTAF 
Sbjct: 121 KRRRTIMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFC 180

Query: 585 IRGEARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
            +GE + AVIKCNFKIEF+ REINEI    DF S+V+LL L SSP ++YRTAD
Sbjct: 181 FKGEGKHAVIKCNFKIEFLLREINEINECKDFASLVLLLQLTSSPLVFYRTAD 233


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
           gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
           6 [Solanum lycopersicum]
          Length = 1197

 Score =  284 bits (727), Expect = 2e-74
 Identities = 137/233 (58%), Positives = 176/233 (75%)
 Frame = +3

Query: 45  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 224
           MG +  D +++VTQIS+GG   +++AKML +YLE++VG VWRCR+KTSSTP DSYP ++I
Sbjct: 1   MGSEDSDMNIVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 225 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 404
           + E V+R   Y KVEPHAFVHFA ++SA  AL  +    L L  + +KVS GP+N + ++
Sbjct: 61  DVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120

Query: 405 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 584
           E RRT  P+K   V +EIGVL S D+FVVGWRGP +G +FLVDPFNG C+I FTRDTAF 
Sbjct: 121 ERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFC 180

Query: 585 IRGEARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
            +GE + AVIKCNFKIEF+ REINEI    DF+S+V+LL LASSP ++YRTAD
Sbjct: 181 FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTAD 233


>gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlisea aurea]
          Length = 1195

 Score =  278 bits (710), Expect = 2e-72
 Identities = 126/227 (55%), Positives = 173/227 (76%)
 Frame = +3

Query: 63  DNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQ 242
           D D +VTQIS+ G++ +++AKML+D+ +  +G VWRCR+KTSS P DSYPN++I+   VQ
Sbjct: 1   DEDSVVTQISVAGIEDHVTAKMLVDFFQKNIGFVWRCRLKTSSLPPDSYPNYDIDISRVQ 60

Query: 243 RKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTT 422
              +YE+ + HA+VHFA+ K A  A + + SG L +G + ++V  GPQNP+R++E RRT 
Sbjct: 61  GNNDYERAKRHAYVHFAIPKCAKLAADAAASGRLTMGQKQLRVGLGPQNPHRMNERRRTI 120

Query: 423 TPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEAR 602
           + +K+  VS+E+G ++S++EF VGWRGP +G DF+VDP+NGTC+I F RDTAFSI  E R
Sbjct: 121 SSYKLFDVSVEVGSMKSQNEFYVGWRGPSSGVDFIVDPYNGTCKIQFERDTAFSITDEDR 180

Query: 603 PAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
             V+KCNFKIEF PREI EIKRY DF S++I+L L SSP +YYRTAD
Sbjct: 181 LVVMKCNFKIEFTPREIIEIKRYRDFYSLIIMLQLFSSPLIYYRTAD 227


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
           gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
           6 [Gossypium hirsutum]
          Length = 1196

 Score =  278 bits (710), Expect = 2e-72
 Identities = 132/226 (58%), Positives = 176/226 (77%), Gaps = 1/226 (0%)
 Frame = +3

Query: 69  DMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 245
           + +VTQ+S+GG D+++ A+ LM YLE++VGLVWRCR+KTS TP +SYPNFEI +T  +QR
Sbjct: 9   ETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQR 68

Query: 246 KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 425
           K  Y+KVEPHAFVHFA  ++   A++ +    L   +Q++KVS GP+NPY L+  RR TT
Sbjct: 69  KDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDTT 128

Query: 426 PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 605
           PFK+P VS+EIG L S DEF+VGWRGP +G +FLVDPF+ TC+  F+RDTAFS +G    
Sbjct: 129 PFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNEH 188

Query: 606 AVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
           AVIKC+FK+EF+ REINE+K+Y++ T  V+LL LASSP ++YRTAD
Sbjct: 189 AVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTAD 234


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1198

 Score =  276 bits (707), Expect = 4e-72
 Identities = 130/226 (57%), Positives = 178/226 (78%), Gaps = 1/226 (0%)
 Frame = +3

Query: 69  DMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 245
           + +VTQ+SLGG D +++AK L++YLE ++GLVWRCR+KTS TP +SYPNFEI +   + R
Sbjct: 9   ETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITR 68

Query: 246 KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 425
             +Y +VEPHAFVHFAL +SA  A++ ++   L L ++ +K S GP+NP+ L++ RR TT
Sbjct: 69  TEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTT 128

Query: 426 PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 605
           PFK+ GV +EIG L SRDEF VGWRGP TG DFLVDPF+GTC+  F+R+TAFS +  A  
Sbjct: 129 PFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEH 188

Query: 606 AVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
           AVIKC+FK+EF+ R+INEIK+YT+ + +V+LL LAS+P+++YRTAD
Sbjct: 189 AVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTAD 234


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
           gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
           6 [Theobroma cacao]
          Length = 1197

 Score =  271 bits (693), Expect = 2e-70
 Identities = 127/228 (55%), Positives = 177/228 (77%), Gaps = 1/228 (0%)
 Frame = +3

Query: 63  DNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESV 239
           + D +VTQ+S+GG  ++++AK LM+Y +++VG+VWRCR+KTS TP +SYPNFEI ++  +
Sbjct: 7   EKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDSTVI 66

Query: 240 QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 419
           QR  +Y+KVEPHAFVHFA   +A  A++ +    L+  +Q++KVS GP+NPY L+  RR 
Sbjct: 67  QRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRN 126

Query: 420 TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 599
           TTPFK+  V ++IG + SRDEF VGWRGP  G DFLVDPF+GTC+  F+RDTAFS +G  
Sbjct: 127 TTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTT 186

Query: 600 RPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
             AVIKC+FK+EF+ R+INEIK+YT+ + +V+ L LASSP+++YRTAD
Sbjct: 187 EYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTAD 234


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
           sinensis]
          Length = 1025

 Score =  270 bits (690), Expect = 4e-70
 Identities = 126/225 (56%), Positives = 169/225 (75%), Gaps = 1/225 (0%)
 Frame = +3

Query: 72  MIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRK 248
           ++  Q+S GG D+N+ A  L+ YLE++VG VWRCR+KTS TP +SYP+F + NT  V++ 
Sbjct: 10  LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVRKT 69

Query: 249 TEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTP 428
            +YEKVEPHAFVHFA+     RA++ +    L L  Q +KVS GP+NP+RL++  RT+TP
Sbjct: 70  DDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTP 129

Query: 429 FKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPA 608
           FK+P V +EIG L SRDEF V WRGP +G DFLVDPF+GTC+  FTRD AF+++     A
Sbjct: 130 FKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHA 189

Query: 609 VIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
           VIKC FK+EF+ REIN +K+Y++F+ V ILL LASSP+++YRTAD
Sbjct: 190 VIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTAD 234


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
           sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
           sinensis]
          Length = 1197

 Score =  270 bits (690), Expect = 4e-70
 Identities = 126/225 (56%), Positives = 169/225 (75%), Gaps = 1/225 (0%)
 Frame = +3

Query: 72  MIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRK 248
           ++  Q+S GG D+N+ A  L+ YLE++VG VWRCR+KTS TP +SYP+F + NT  V++ 
Sbjct: 10  LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVRKT 69

Query: 249 TEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTP 428
            +YEKVEPHAFVHFA+     RA++ +    L L  Q +KVS GP+NP+RL++  RT+TP
Sbjct: 70  DDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTP 129

Query: 429 FKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPA 608
           FK+P V +EIG L SRDEF V WRGP +G DFLVDPF+GTC+  FTRD AF+++     A
Sbjct: 130 FKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHA 189

Query: 609 VIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
           VIKC FK+EF+ REIN +K+Y++F+ V ILL LASSP+++YRTAD
Sbjct: 190 VIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTAD 234


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  270 bits (689), Expect = 5e-70
 Identities = 128/228 (56%), Positives = 173/228 (75%), Gaps = 1/228 (0%)
 Frame = +3

Query: 63  DNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESV 239
           + DM+VTQIS+GG D+ ++A  L  YLED +G V RCR+KTSSTP +SYP+FEI +T  +
Sbjct: 7   EKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKI 66

Query: 240 QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 419
           +R  +Y+KVEPHAFVHF   ++A  AL+ +    L L  + +KVS GP+ P+ L++ RRT
Sbjct: 67  ERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRT 126

Query: 420 TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 599
           T PFK P V +EIG+L SRDE+  GWRGP +G DFLVDPF+GTC+  FT+DTAFS +G  
Sbjct: 127 TFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMP 186

Query: 600 RPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
           + AVIKCNFK+EF+ REINE+++  D +S+++LL L+SSP +YYRTAD
Sbjct: 187 KHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTAD 234


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223545464|gb|EEF46969.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 1203

 Score =  268 bits (686), Expect = 1e-69
 Identities = 130/234 (55%), Positives = 173/234 (73%), Gaps = 1/234 (0%)
 Frame = +3

Query: 45  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 224
           M  K  + + +VTQ+S GG DK+++A+ L+ YL++++G VWRCR+KTS TP +SYPNFEI
Sbjct: 1   METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 225 -NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRL 401
            +T  +QR   Y +VEPHAFVHFA   SA  A   +    L    + +KVS GP+NP+ L
Sbjct: 61  TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 402 SEMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAF 581
           ++ RRTT PFK+  V +EIG L SRDEF+VGWRGP +G DFLVDPF+G C+  FTRDTAF
Sbjct: 121 NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 582 SIRGEARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
           S +G    AVI+C+FK+EF+ R+INEIK+YTD + +VILL LAS+P ++YRTAD
Sbjct: 181 SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTAD 234


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1200

 Score =  265 bits (676), Expect = 2e-68
 Identities = 126/226 (55%), Positives = 174/226 (76%), Gaps = 1/226 (0%)
 Frame = +3

Query: 69  DMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 245
           + +VTQ+S+GG D +++AK L++YL+  +GLVWRCR+KTS TP +SYPNFEI +   ++R
Sbjct: 9   ETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKIER 68

Query: 246 KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 425
             +Y +V PHAFVHFAL +SA  A+  S    L L ++ +KVS GP+NP+ L++ RRTTT
Sbjct: 69  TEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTT 128

Query: 426 PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 605
           PFK+  V  EIG L SRDEF VGWRGP +G DFLVDPF+GTC+  F+R+TAFS++  +  
Sbjct: 129 PFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEH 188

Query: 606 AVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
           AVIKC+FK+EF+ R+INEI +YT+ + +V+LL LAS+P ++YRTAD
Sbjct: 189 AVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTAD 234


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
           gi|462422376|gb|EMJ26639.1| hypothetical protein
           PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  258 bits (660), Expect = 1e-66
 Identities = 126/233 (54%), Positives = 165/233 (70%)
 Frame = +3

Query: 45  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 224
           M ++  +N  +VTQ+S GG   +  AK L+ YLED++GLV+RCR+KTS TP +S+PNFEI
Sbjct: 1   MEFEGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI 60

Query: 225 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 404
           NT  V+R  +Y +VEPHAFVHF    S   A++ +    L   ++ +KVS GP+NPY L+
Sbjct: 61  NTADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLN 120

Query: 405 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 584
             RRT TPFK+  V +EIG L  +DEF   WRGP  G DF+VDPF+GTC+  FT DTAFS
Sbjct: 121 RRRRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFS 180

Query: 585 IRGEARPAVIKCNFKIEFVPREINEIKRYTDFTSVVILLLLASSPQLYYRTAD 743
            +G  + AVIKC+FK+EF+ REI EIK+YTD + +VILL L SSP + YRTAD
Sbjct: 181 FKGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTAD 233