BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00007132
         (1780 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus...   434   e-122
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   424   e-116
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   422   e-115
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   417   e-114
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   415   e-113
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   412   e-112
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   409   e-111
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   408   e-111
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   397   e-108
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   395   e-107
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   380   e-102
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ...   368   5e-99
ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phas...   367   7e-99
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-...   366   2e-98
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun...   361   5e-97
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   357   9e-96
ref|XP_007161320.1| hypothetical protein PHAVU_001G059800g [Phas...   351   7e-94
emb|CAB83107.1| sigma factor 3 [Sinapis alba]                         348   3e-93
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   348   6e-93
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   344   6e-92

>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
          Length = 478

 Score =  434 bits (1117), Expect(2) = e-122
 Identities = 214/274 (78%), Positives = 246/274 (89%), Gaps = 1/274 (0%)
 Frame = +3

Query: 771  NKKLKVARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSLSSWAEAAGVEKKELQRRLNY 950
            NK+ K ARNEA+MSSGVK VAELEK+R +LE+++G++ SLS+WAEAAG++KKELQ+ L+Y
Sbjct: 176  NKRQKTARNEADMSSGVKRVAELEKIRTKLEQETGQIASLSNWAEAAGIKKKELQQHLHY 235

Query: 951  GWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYV 1130
            GWHCRDELL ST SLVLFIARNY GLGVAFEDLIQAG +GVLQGAERFDQ+RGYKFSTYV
Sbjct: 236  GWHCRDELLRSTHSLVLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFDQSRGYKFSTYV 295

Query: 1131 QYWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSV 1310
            QYWIRKSMSTLVA+H+RG+RIP TL K +NQVHKARKAL  SNG YPDD EIAKFTGLSV
Sbjct: 296  QYWIRKSMSTLVAKHARGVRIPCTLSKVINQVHKARKALTTSNGKYPDDYEIAKFTGLSV 355

Query: 1311 AKIISASKCLRVVGSIDQKVGDF-NTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGL 1487
            AK++SASKCLRVVGSIDQK+G++  TKYMEI+ DTS  +PEEAV RQHM+ DV TLL+GL
Sbjct: 356  AKVMSASKCLRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTLLNGL 415

Query: 1488 DSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            + RE++VIILRFGLGNCQCKSLEEIGR F VSKE
Sbjct: 416  EPREKQVIILRFGLGNCQCKSLEEIGRLFRVSKE 449



 Score = 34.7 bits (78), Expect(2) = e-122
 Identities = 14/17 (82%), Positives = 17/17 (100%)
 Frame = +2

Query: 1619 MRNEESLKILNHYVYMQ 1669
            +RNE+SLKILNHYV+MQ
Sbjct: 462  LRNEDSLKILNHYVHMQ 478



 Score = 95.1 bits (235), Expect = 9e-17
 Identities = 50/91 (54%), Positives = 67/91 (73%)
 Frame = +3

Query: 252 KYFLETRELKVAVGKGSADGLYRLLGSDTQSSNDKEKSASVISSLGMQASQYRLLMKNLD 431
           K+   ++ ++VA+GKGS+D LY LL SD Q   +++K  ++ S    QAS+ RLLMKNLD
Sbjct: 4   KHVYVSKYIQVALGKGSSDSLYSLLDSDIQIPKNEDKLENLTSVQATQASKLRLLMKNLD 63

Query: 432 MLEYLFTDSDVVRLERDILEHLQRLGALRLF 524
           +LE +F DS+ VRLE DILE L+RLGALRLF
Sbjct: 64  VLEDMFADSNAVRLEGDILEQLERLGALRLF 94


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  424 bits (1089), Expect = e-116
 Identities = 246/534 (46%), Positives = 332/534 (62%), Gaps = 15/534 (2%)
 Frame = +3

Query: 33   MGFRLNIKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYVLARVSAASVLYSEAET-QNDT 209
            MGFRLN+KW                      +G+++S+   R S  SV   + E+   D 
Sbjct: 3    MGFRLNLKWD-FPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDP 61

Query: 210  SRTQVLSSSH-QLLEKYFLETRELKVAVGKGSADGLYRLLGSDTQSSNDKEKSASVISSL 386
             +    SS   Q  E  +     +K+ +GK S   L++++ + +Q+   ++ SASV    
Sbjct: 62   FKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNA-SQAPIGEDISASVAGLQ 120

Query: 387  GMQASQYRLLMKNLDMLEYLFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXX 566
              +ASQ+ LL++NLD+LE +F DS++VRLERDI+  L RLGAL+LF              
Sbjct: 121  ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180

Query: 567  XXXXXXXTENVDEPRLNDSIENHVGTVVIXXXXXXXXXXXXXXXXXXXXX---------T 719
                   TE++ E + N ++++H+  VV+                              T
Sbjct: 181  DLFSAP-TEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKT 239

Query: 720  LQEDXXXXXXXXXXXXXN---KKLKVARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSL 890
            +++              N   K+L  A+NEAEMS GVK+VA LE++R  LE++ G + SL
Sbjct: 240  IRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASL 299

Query: 891  SSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVG 1070
            S+WAEAAGV+KK LQ++L +GW+CRDELL ST SLVL+IARNY G+GVAFED++QAG +G
Sbjct: 300  SNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLG 359

Query: 1071 VLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKALR 1250
            VLQGAERFD T+GY+FSTYVQYWIRKSMSTLVARH+RG++IP TL +A+ Q+ KARKAL 
Sbjct: 360  VLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALY 419

Query: 1251 RSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKVGD-FNTKYMEIIPDTSTATP 1427
            +S+G YPDD EIAKFTGLS+AKI SA  CLRVVGS DQ   D +    +E  PDTS  +P
Sbjct: 420  KSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSP 479

Query: 1428 EEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            EE   +Q   KD++ LL GLD RER++++LR+G G  Q KSLEEIGRRF+VSKE
Sbjct: 480  EEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKE 533


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
          Length = 555

 Score =  422 bits (1085), Expect = e-115
 Identities = 250/533 (46%), Positives = 323/533 (60%), Gaps = 14/533 (2%)
 Frame = +3

Query: 33   MGFRLNIKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYVLARVSAASVLYSEAETQNDTS 212
            MGFRL++KWG                     +GR++ Y  AR     +      + +D  
Sbjct: 1    MGFRLHLKWG-FSVQPPFSSNSSSWPSSHSFKGREALYDPARSLKPFITGDCEPSHSDPF 59

Query: 213  RTQVLSSSHQLLEKYFLETRELKVAVGKGSADGLYRLLGSDTQS-SNDKEKSASVISSLG 389
            R Q   S  QL       T E+K   G+GS   +Y  +GS     S D EK   + ++  
Sbjct: 60   RVQTCLSDPQLWTSDTSVTTEIKTRNGRGSPSNVYGDIGSHKIGISPDGEKPTYLNTTKS 119

Query: 390  MQASQYRLLMKNLDMLEYLFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXXX 569
            +  S   LLMKNLD+LE +F DS++ RLERDIL  L++LGAL  F               
Sbjct: 120  LHFS---LLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSTFPK 176

Query: 570  XXXXXXTENVDEPRLNDSIENHVGTVVIXXXXXXXXXXXXXXXXXXXXX---------TL 722
                   E + E   +D + N +  VV+                               +
Sbjct: 177  VLDVPR-ELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNI 235

Query: 723  QEDXXXXXXXXXXXXX---NKKLKVARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSLS 893
            QED                NK+ K+A+NEAEMS GVK+VA+LE++R  LE+++G + + S
Sbjct: 236  QEDLQQPKFYSGKRTQASRNKRQKIAKNEAEMSRGVKLVAQLERIRSILEEETGRVATFS 295

Query: 894  SWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGV 1073
            SWAEAAG+E+KELQ+RL++GW+CRDELL STRSLVL++ARNY GLGVAFEDLIQAG +GV
Sbjct: 296  SWAEAAGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGV 355

Query: 1074 LQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKALRR 1253
            LQGA RFD TRGYKFSTYVQYWIRKS+S LVA+H+RG+RIP T+ K +NQ+HKARK L R
Sbjct: 356  LQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSR 415

Query: 1254 SNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKVGD-FNTKYMEIIPDTSTATPE 1430
            S+G +P D EIAKFTGLS A+I  ASKCLRVVGSIDQKVGD  + K +E+ PD S  +PE
Sbjct: 416  SHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPE 475

Query: 1431 EAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            E V RQ ++ ++Y+LL+ LD +E++VI  RFGL   Q KSLEEIGR + VSKE
Sbjct: 476  ETVMRQDIVDNMYSLLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKE 528


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  417 bits (1072), Expect = e-114
 Identities = 238/503 (47%), Positives = 323/503 (64%), Gaps = 15/503 (2%)
 Frame = +3

Query: 126  RGRDSSYVLARVSAASVLYSEAET-QNDTSRTQVLSSSH-QLLEKYFLETRELKVAVGKG 299
            +G+++S+   R S  SV   + E+   D  +    SS   Q  E  +     +K+ +GK 
Sbjct: 83   QGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKC 142

Query: 300  SADGLYRLLGSDTQSSNDKEKSASVISSLGMQASQYRLLMKNLDMLEYLFTDSDVVRLER 479
            S   L++++ + +Q+   ++ SASV      +ASQ+ LL++NLD+LE +F DS++VRLER
Sbjct: 143  SHGDLFKIVNA-SQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201

Query: 480  DILEHLQRLGALRLFDXXXXXXXXXXXXXXXXXXXXTENVDEPRLNDSIENHVGTVVIXX 659
            DI+  L RLGAL+LF                     TE++ E + N ++++H+  VV+  
Sbjct: 202  DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAP-TEHIRECQTNGTVDDHLDKVVVRS 260

Query: 660  XXXXXXXXXXXXXXXXXXX---------TLQEDXXXXXXXXXXXXXN---KKLKVARNEA 803
                                        T+++              N   K+L  A+NEA
Sbjct: 261  GKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEA 320

Query: 804  EMSSGVKMVAELEKLRMRLEKDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTS 983
            EMS GVK+VA LE++R  LE++ G + SLS+WAEAAGV+KK LQ++L +GW+CRDELL S
Sbjct: 321  EMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRS 380

Query: 984  TRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTL 1163
            T SLVL+IARNY G+GVAFED++QAG +GVLQGAERFD T+GY+FSTYVQYWIRKSMSTL
Sbjct: 381  THSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTL 440

Query: 1164 VARHSRGIRIPSTLGKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLR 1343
            VARH+RG++IP TL +A+ Q+ KARKAL +S+G YPDD EIAKFTGLS+AKI SA  CLR
Sbjct: 441  VARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLR 500

Query: 1344 VVGSIDQKVGD-FNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSREREVIILR 1520
            VVGS DQ   D +    +E  PDTS  +PEE   +Q   KD++ LL GLD RER++++LR
Sbjct: 501  VVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLR 560

Query: 1521 FGLGNCQCKSLEEIGRRFSVSKE 1589
            +G G  Q KSLEEIGRRF+VSKE
Sbjct: 561  YGFGEQQRKSLEEIGRRFNVSKE 583


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
            lycopersicum]
          Length = 551

 Score =  415 bits (1066), Expect = e-113
 Identities = 246/532 (46%), Positives = 318/532 (59%), Gaps = 13/532 (2%)
 Frame = +3

Query: 33   MGFRLNIKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYVLARVSAASVLYSEAETQNDTS 212
            MGFRL++KWG                     +GR++ Y  AR     +      + +D  
Sbjct: 1    MGFRLHLKWG-FSLQPPFSSNSSSWPSSHSFKGRETLYDPARSLKPFINGDCEPSHSDPF 59

Query: 213  RTQVLSSSHQLLEKYFLETRELKVAVGKGSADGLYRLLGSDTQSSNDKEKSASVISSLGM 392
            R Q   S  QL       T E K   G+GS   +Y  +GS  +   +K    +   SL  
Sbjct: 60   RVQTCLSDPQLWTSDASVTTETKTRNGRGSPSNVYGDIGS-YKIDGEKPTYLNTTKSL-- 116

Query: 393  QASQYRLLMKNLDMLEYLFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXXXX 572
                + LLMKNLD+LE +F DS++ RLERDIL  L++LGAL  F                
Sbjct: 117  ---HFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSSFPKV 173

Query: 573  XXXXXTENVDEPRLNDSIENHVGTVVIXXXXXXXXXXXXXXXXXXXXX---------TLQ 725
                  E + E   +D + N +  VV+                               +Q
Sbjct: 174  LDVPR-ELIKEVEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNIQ 232

Query: 726  EDXXXXXXXXXXXXX---NKKLKVARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSLSS 896
            ED                 K+ K+A+NEAEMS GVK+VA+LE++R  LE+++G++ + SS
Sbjct: 233  EDLQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVKLVAQLERIRSILEEETGQVATFSS 292

Query: 897  WAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVL 1076
            WA+AAG+E+KELQ+ L++GW+CRDELL STRSLVL++ARNY GLGVAFEDLIQAG +GVL
Sbjct: 293  WAKAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVL 352

Query: 1077 QGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKALRRS 1256
            QGA RFD TRGYKFSTYVQYWIRKS+S LVA+H+RG+RIP T+ K +NQ+HKARK L RS
Sbjct: 353  QGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRS 412

Query: 1257 NGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKVGD-FNTKYMEIIPDTSTATPEE 1433
            +G +P D EIAKFTGLS A+I  ASKCLRVVGSIDQKVGD  N K +E+ PD S  +PEE
Sbjct: 413  HGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTSPEE 472

Query: 1434 AVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
             V RQ ++ ++Y LL+ LD +E++VI  RFGL   Q KSLEEIGR + VSKE
Sbjct: 473  FVMRQDIVDNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKE 524


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553989|gb|ESR64003.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  412 bits (1059), Expect = e-112
 Identities = 236/534 (44%), Positives = 322/534 (60%), Gaps = 15/534 (2%)
 Frame = +3

Query: 33   MGFRLNIKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYVLARVSAASVLYSEAET--QND 206
            MGFRLN+KW                      RGR+ S+  AR+S  S +  ++ +  Q+ 
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSV-RGREGSFNSARLSFLSTISEDSASYFQDP 61

Query: 207  TSRTQVLSSSHQLLEKYFLETRELKVAVGKGSADGLYRLLGSDTQSSNDKEKSASVISSL 386
                     + Q +E  + ET E++                         +KS S I   
Sbjct: 62   VKAYTCSFVNTQTVENDYSETEEIR-------------------------QKSTSCIGQD 96

Query: 387  GMQASQYRLLMKNLDMLEYLFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXX 566
                S +RLLM+NLD+LE  F DSD +RLER+IL+ L +LGAL+LF+             
Sbjct: 97   ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 567  XXXXXXXTENVDEPRLNDSIENHVGTVVIXXXXXXXXXXXXXXXXXXXXXT--------- 719
                     + +E ++NDS + H+G +++                     T         
Sbjct: 157  DLSDV----HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEA 212

Query: 720  LQEDXXXXXXXXXXXXXN---KKLKVARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSL 890
            LQE              N   ++L +ARNEAEMS GV++VA LE+++  LEK+SG+  SL
Sbjct: 213  LQEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAASL 272

Query: 891  SSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVG 1070
            + WA+AAGV ++ L++ L +GW+CR+EL+ STR LVLF+ARNY GLG+ F DL+QAG VG
Sbjct: 273  NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332

Query: 1071 VLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKALR 1250
            VLQGAERFD TRGYKFSTYVQYWIRKS+S +VARH+RGI+IP  L + ++++ KARKAL 
Sbjct: 333  VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392

Query: 1251 RSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKVGD-FNTKYMEIIPDTSTATP 1427
             S+G YP+D EIAK+TGLS+A+I SAS+CLR+VGSIDQK+GD  N KY+E  PD S  +P
Sbjct: 393  NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452

Query: 1428 EEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            +E V RQHM KDV+ +L+ LDSRER+V++LR+GL + + KSLEEIG+ F VSKE
Sbjct: 453  KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKE 506


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  409 bits (1052), Expect = e-111
 Identities = 244/533 (45%), Positives = 323/533 (60%), Gaps = 15/533 (2%)
 Frame = +3

Query: 36   GFRLNIKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYVLARVSAASVLYSEAE-TQNDTS 212
            GFRLN+K                       RGR+++   +R+S  SV+  E +    D  
Sbjct: 4    GFRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHRDPL 63

Query: 213  RTQVLSSSHQLLEKYFLETRELKVAVGKGSADGLYRLLGSDTQSSNDKEKSASVISSLGM 392
            +T   S + Q +E    +    KV  GK S  GL  +  ++     D   S S   S   
Sbjct: 64   KTYAYSYAVQTVENEHSQGEGFKVNFGKRSHFGLNIIGDAEVSLKEDIFVSPS---STKE 120

Query: 393  QASQYRLLMKNLDMLEYLFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXXXX 572
            + S++ LL++NL++LE  F DSD  +LE DIL  L +LGAL+LF+               
Sbjct: 121  RTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLEV 180

Query: 573  XXXXXTENVDEPRLND-SIENHVGTVVIXXXXXXXXXXXXXXXXXXXXXTLQ-------- 725
                 TE + E  +N  SI N +  VV                      +          
Sbjct: 181  SDVH-TEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPI 239

Query: 726  ----EDXXXXXXXXXXXXXNKKLKVARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSLS 893
                E              +++L +ARNEAEM+ G+K++A+LEK+R  LE+++  + SLS
Sbjct: 240  QSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLS 299

Query: 894  SWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGV 1073
             WAEAAG++ K LQ++L++GW+CRDEL+ STRSLVL+ ARNY G G+A EDL+QAG +GV
Sbjct: 300  CWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGV 359

Query: 1074 LQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKALRR 1253
            L+GAERFD TRGY+FSTYVQYWIRKSMS +V+R +RGI+IP TL +A+ Q+ KARKAL  
Sbjct: 360  LEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTT 419

Query: 1254 SNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKVGD-FNTKYMEIIPDTSTATPE 1430
            SNG YPDD EIAK+TGLS+AKI SAS+CLRVVGSIDQK+G+  N KY+E +PDTS  +PE
Sbjct: 420  SNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPE 479

Query: 1431 EAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            E V RQHMI+D++ LL  LDSRER+V+ILRFGL + Q KSLEEIGR F VSKE
Sbjct: 480  EVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKE 532


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  408 bits (1049), Expect = e-111
 Identities = 234/534 (43%), Positives = 321/534 (60%), Gaps = 15/534 (2%)
 Frame = +3

Query: 33   MGFRLNIKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYVLARVSAASVLYSEAET--QND 206
            MGFRLN+KW                      RGR+ S+  AR+S  S +  ++ +  Q+ 
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSV-RGREGSFNSARLSFLSTISEDSASYFQDP 61

Query: 207  TSRTQVLSSSHQLLEKYFLETRELKVAVGKGSADGLYRLLGSDTQSSNDKEKSASVISSL 386
                     + Q +E  + ET E++                         +KS S I   
Sbjct: 62   VKAYTCSFVNTQTVENDYSETEEIR-------------------------QKSTSCIGQD 96

Query: 387  GMQASQYRLLMKNLDMLEYLFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXX 566
                S +RLLM+NLD+LE  F DSD +RLER+IL+ L +LGAL+LF+             
Sbjct: 97   ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156

Query: 567  XXXXXXXTENVDEPRLNDSIENHVGTVVIXXXXXXXXXXXXXXXXXXXXXT--------- 719
                     + +E +++DS + H+G +++                     T         
Sbjct: 157  DLSDV----HTEEQKMDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLSLPSEA 212

Query: 720  LQEDXXXXXXXXXXXXXN---KKLKVARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSL 890
            LQE              N   ++L +ARNEAEMS GV++VA LE+++  LEK+SG+   L
Sbjct: 213  LQEGLKQPTIFSAERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARL 272

Query: 891  SSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVG 1070
            + WA+AAGV ++ L++ L +GW+CR+EL+ STR LVLF+ARNY GLG+ F DL+QAG VG
Sbjct: 273  NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332

Query: 1071 VLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKALR 1250
            VLQGAERFD TRGYKFSTYVQYWIRKS+S +VARH+RGI+IP  L + ++++ KARKAL 
Sbjct: 333  VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392

Query: 1251 RSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKVGD-FNTKYMEIIPDTSTATP 1427
             S+G YP+D EIAK+TGLS+A+I SAS+CLR+VGSIDQK+GD  N KY+E  PD S  +P
Sbjct: 393  NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSP 452

Query: 1428 EEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            +E V RQHM KDV+ +L+ LDSRER+V++LR+GL + + KSLEEIG+ F VSKE
Sbjct: 453  KEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKE 506


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
            gi|462419859|gb|EMJ24122.1| hypothetical protein
            PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  397 bits (1020), Expect = e-108
 Identities = 236/535 (44%), Positives = 323/535 (60%), Gaps = 16/535 (2%)
 Frame = +3

Query: 33   MGFRLNIKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYVLARVSAASVLYSEAETQN-DT 209
            +GFRLN+K G                     RGR+ S+  AR+S  SV+  E E  + D 
Sbjct: 3    LGFRLNLKCGFPVHSSHWQTTSPSKISSTSVRGREGSFNSARLSFLSVISEEGEASSKDP 62

Query: 210  SRTQVL-SSSHQLLEKYFLETRELKVAVGKGSADGLYRLLGSDTQSSNDKEKSASVISSL 386
             +     S+S Q+LE    E  E+K A         +R +      +         ISS 
Sbjct: 63   LKVYTFPSASPQILEDGVSELEEVKTA---------FRRVPKSFSDNQMPVAEGKFISSK 113

Query: 387  GMQA---SQYRLLMKNLDMLEYLFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXX 557
            G++A   S + LL++NL++LE  F  SDV++LE++IL  L RLGAL+LFD          
Sbjct: 114  GLEACTASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTS 173

Query: 558  XXXXXXXXXXTENVDEPRLNDSIENHVGTVVIXXXXXXXXXXXXXXXXXXXXX------- 716
                      T  V+E ++    +N+VG +++                            
Sbjct: 174  SFLDLSDIP-TVPVEEGKMERKEDNNVGEIIVRSGKKEERRSRKRTSDNAIVSSNSLPPK 232

Query: 717  TLQEDXXXXXXXXXXXXXN---KKLKVARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPS 887
            T+ +              N   ++L +++NEAEMS GVK++A+LE+++  LEK++G++ +
Sbjct: 233  TIWKGLKKPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVAT 292

Query: 888  LSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKV 1067
            L  WAEAAGV +K L + L +GW+C+DEL+ STRSLVL++ARNY GLGVA +DL+QAG +
Sbjct: 293  LRCWAEAAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNL 352

Query: 1068 GVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKAL 1247
            G+LQGAERFD +RGY+FSTYVQYWIRKSMS LVA+H+RG++IP TL KA+NQ+ KARKA 
Sbjct: 353  GLLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKAN 412

Query: 1248 RRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKVGDFNT-KYMEIIPDTSTAT 1424
              S+  YPDD EIAK TGLS+A+I SAS CLRVVGS+D K+ + +   YME  PDTS  +
Sbjct: 413  YNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKS 472

Query: 1425 PEEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            PEE V RQHM KD++ LL GL+ RER+V++LR+GL N   KSLEEIGR F VSKE
Sbjct: 473  PEETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKE 527


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
            gi|222854562|gb|EEE92109.1| hypothetical protein
            POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  395 bits (1014), Expect = e-107
 Identities = 234/532 (43%), Positives = 318/532 (59%), Gaps = 13/532 (2%)
 Frame = +3

Query: 33   MGFRLNIKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYVLARVSAASVLYSEAETQNDTS 212
            +GFRL  KWG                     RG ++S   AR+S  SV+  E +  N  S
Sbjct: 3    VGFRLTPKWGSPMQSHSATNSTSMFSSFS-ARGMEASVNQARLSFLSVVSEEGDILNKHS 61

Query: 213  -RTQVLSSSHQLLEKYFLETRELKVAVGKGSADGLYRLLGSDTQSSNDKEKSASVISSLG 389
             ++   SS+ Q +E   L+   LK+ V K S   +  ++G+D + S ++E S S      
Sbjct: 62   FKSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNMMGND-KVSVEEEISTSHTRLRE 120

Query: 390  MQASQYRLLMKNLDMLEYLFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXXX 569
               S+   L+ NLD LE L  D D ++LERDIL  L RLGAL  F+              
Sbjct: 121  RMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLD 180

Query: 570  XXXXXXTENVDEPRLNDSIENHVGTVVIXXXXXXXXXXXXXXXXXXXXX----------T 719
                  TEN  E + +  + +  G  V+                               T
Sbjct: 181  LSAVP-TENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKT 239

Query: 720  LQEDXXXXXXXXXXXXXNKKLK-VARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSLSS 896
            +Q +             + +   +ARNEA+M+ GVK+ ++LE++R  LE+++G++ SLS 
Sbjct: 240  VQNNLPKPTFVKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSC 299

Query: 897  WAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVL 1076
            WAEA G++KK LQ++L +GW+CRDEL+ +T SLVL+IARNY G+G+A EDLIQAG +G+L
Sbjct: 300  WAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLL 359

Query: 1077 QGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKALRRS 1256
            QGAERFD TRGY+FSTYVQYWIRKSM  +V RH+RGI+IP  L +++N++ KARKAL  S
Sbjct: 360  QGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNS 419

Query: 1257 NGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKVGDFN-TKYMEIIPDTSTATPEE 1433
            +G YPDD E+AKFTGLS+AKI SA KCLRVV S+DQK+G+ +  KY E IPD S   PEE
Sbjct: 420  HGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEE 479

Query: 1434 AVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            AV RQHM +++Y LL GLDSRE++V++LR+G  + Q KSL EIGR F VSKE
Sbjct: 480  AVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKE 531


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  380 bits (976), Expect = e-102
 Identities = 225/478 (47%), Positives = 292/478 (61%), Gaps = 16/478 (3%)
 Frame = +3

Query: 204  DTSRTQVLSSSHQLLEKYFLETRELKVAVGKGSADGLYRLLGSD-TQSSNDKEKSASVIS 380
            D  +    S++ Q LEK  LE  E+KV +GKGS    + L   D T      +KS+S  S
Sbjct: 347  DPLKAYASSAAPQTLEKGCLEIEEMKVNIGKGSQAHSHSLTMIDKTHELIGGDKSSSRTS 406

Query: 381  SLGMQASQYRLLMKNLDMLEYLFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXX 560
                +AS Y LLM+NLD+LE  F DSDV+ LER+IL  L R GAL+LF+           
Sbjct: 407  PQACKASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKLFN--TCLSRTLKA 464

Query: 561  XXXXXXXXXTENVDEPRLNDSIENHVGTVVIXXXXXXXXXXXXXXXXXXXXXTLQEDXXX 740
                       N  +  +N S++     +V+                     T+      
Sbjct: 465  SNILDLSDVPANSGDCNMNLSVDGQKDNIVV--CSRKKKQRKKIRERALENPTIISTQLM 522

Query: 741  XXXXXXXXXXNKKLKVARNEAEMSSGVKMVAELE-------KLRMRLEK-------DSGE 878
                        K+  A+  ++  S    +A  E       K+   LE+       ++G 
Sbjct: 523  PSNTLHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERIRTTLEEETGR 582

Query: 879  MPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQA 1058
              SLS WAEAAGV +K LQ+ L +GW+CRDELL STRSLVL+ ARNY GLG+A EDLIQA
Sbjct: 583  AASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGLGIAHEDLIQA 642

Query: 1059 GKVGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKAR 1238
            G +GVLQGAERFD TRGY+FSTYVQ+WIRKS+S +VARH+RGI++P TL +A+ Q+ KAR
Sbjct: 643  GSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLSRAIVQIQKAR 702

Query: 1239 KALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKVGD-FNTKYMEIIPDTS 1415
            KAL +S+G YPD+  IAKFTGLS+AKI SA+KC+RVVGSIDQK+GD  N KY+E IPD S
Sbjct: 703  KALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEFIPDLS 762

Query: 1416 TATPEEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
              +PE+ V RQHM +D++ LL+GLD+RER+V++LR+GL     KSLEEIGR F VSKE
Sbjct: 763  VRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKE 820


>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max]
          Length = 551

 Score =  368 bits (944), Expect = 5e-99
 Identities = 218/500 (43%), Positives = 303/500 (60%), Gaps = 14/500 (2%)
 Frame = +3

Query: 132  RDSSYVLARVSAASVLYSEAET-QNDTSRTQVLSSSH-QLLEKYFLETRELKVAVGKGSA 305
            R++ +   R+S  S  Y E E  Q D  R    SSS  + LE   L   E +V  GK S 
Sbjct: 40   RETCFNFTRLSFPSTFYEEGEALQKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSL 99

Query: 306  DGLYRLLGSDTQSSNDKEKSASVISSLGMQASQYRLLMKNLDMLEYLFTDSDVVRLERDI 485
              +++++ +      +    +    S   +A  +RLLM+NL +LE  F DS+ +RLE+ I
Sbjct: 100  SSVHKMIDNTQMPFGEVSTVSKKFESF--RAQHFRLLMENLCVLEETFVDSEALRLEKAI 157

Query: 486  LEHLQRLGALRLFDXXXXXXXXXXXXXXXXXXXXTENVDEPRLNDSIENHVGTVVIXXXX 665
            +  L +LGAL LF+                              D ++++   VV+    
Sbjct: 158  ILQLGKLGALELFNVCLSRSLGTSLV--------------SNYADKVDDYKDKVVVQSSK 203

Query: 666  XXXXXXXXXXXXXXXXXTL--------QEDXXXXXXXXXXXXXNKKLK---VARNEAEMS 812
                             +         QED             N K K   VA+ EAEMS
Sbjct: 204  KKENKTRRKREFVSTAVSSQSLTLKANQEDLLGFSASLVKRAPNTKNKRILVAKREAEMS 263

Query: 813  SGVKMVAELEKLRMRLEKDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRS 992
             GVK++AELEK+R  +E+D+  + SLS+WAEA+GV++K LQ+ L+ G++C+DEL+ STRS
Sbjct: 264  KGVKVLAELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLHRGYYCQDELIRSTRS 323

Query: 993  LVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVAR 1172
            LVL++AR Y G+G+A +DL+QAG VGVLQGAERFD TRGYKFSTYVQYWIRKS+  +VAR
Sbjct: 324  LVLYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVAR 383

Query: 1173 HSRGIRIPSTLGKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVG 1352
            ++RGI IP +L +A+NQ+ KARKA++ ++   PDD EIAK TGLS+ KI SAS CLR+V 
Sbjct: 384  YARGIVIPWSLNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVA 443

Query: 1353 SIDQKVGDF-NTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSREREVIILRFGL 1529
            SIDQKVGD+   +YME++PD +  +PE+AV +QHM KDV+ LL GL+ RER+++ LRFGL
Sbjct: 444  SIDQKVGDYLGVEYMELLPDATIESPEDAVMKQHMRKDVHDLLKGLNLRERKILTLRFGL 503

Query: 1530 GNCQCKSLEEIGRRFSVSKE 1589
             + Q +SL++IG  F VSKE
Sbjct: 504  NDNQPRSLQDIGTLFKVSKE 523


>ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phaseolus vulgaris]
            gi|561034783|gb|ESW33313.1| hypothetical protein
            PHAVU_001G059800g [Phaseolus vulgaris]
          Length = 538

 Score =  367 bits (943), Expect = 7e-99
 Identities = 213/490 (43%), Positives = 296/490 (60%), Gaps = 4/490 (0%)
 Frame = +3

Query: 132  RDSSYVLARVSAASVLYSEAET-QNDTSRTQVLSSSHQLLEKYFLETRELKVAVGKGSAD 308
            +++ +   ++S  +  Y E E  Q D  R    S+    LE   L   E  V  GK S  
Sbjct: 37   KETCFNCTKLSLPTTSYEEGEALQKDFGRVYAFSAL-DTLENESLGREETGVNKGKRSLS 95

Query: 309  GLYRLLGSDTQSSNDKEKSASVISSLGMQASQYRLLMKNLDMLEYLFTDSDVVRLERDIL 488
            G++ +   DTQ    +  S S           +RLLMKNLD+LE  F DS+ +RLE+ I 
Sbjct: 96   GVHEMF-DDTQMPFGEVSSVSKKFE-SFTPQHFRLLMKNLDVLEEAFADSEALRLEKAIR 153

Query: 489  EHLQRLGALRLFDXXXXXXXXXXXXXXXXXXXXTENVDEPRLNDSIENHVGTVVIXXXXX 668
              L++LGAL +F+                      +  + +     +  +G   +     
Sbjct: 154  LQLEKLGALEIFNVYLSLVTDYADKVHNKGKCVVPSSKKKQNKTRRKREIGVTAVSSQSL 213

Query: 669  XXXXXXXXXXXXXXXXTLQEDXXXXXXXXXXXXXN---KKLKVARNEAEMSSGVKMVAEL 839
                              QED             N   K++ VA+ EAEM+ GVK++AEL
Sbjct: 214  TLKVN-------------QEDLLGFSVSVVKRATNSKNKRMMVAKREAEMAKGVKVLAEL 260

Query: 840  EKLRMRLEKDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNY 1019
            EK+R  LE+D+  +  L+ WAEA+GV++K LQ+ L++G++CRDEL+ S+RSLVL++AR Y
Sbjct: 261  EKIRTALEEDTKRVVCLNHWAEASGVDEKVLQQLLHHGYYCRDELVRSSRSLVLYLARKY 320

Query: 1020 WGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHSRGIRIPS 1199
             G+G+A +DL+QAG VGVLQGAERFD TRGYKFSTYVQYWIRKS+  +V R+SRG+ IP 
Sbjct: 321  RGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVERYSRGVIIPW 380

Query: 1200 TLGKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKVGDF 1379
            +L +A+ Q+ KARK L+ ++   PDDCEIAK TGLS+ KI SAS CLR+V SIDQKVG+F
Sbjct: 381  SLNRAIKQIQKARKVLKSTHKKSPDDCEIAKMTGLSLDKIKSASNCLRIVASIDQKVGNF 440

Query: 1380 NTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEE 1559
            + +Y E++PDT+  +PE  V +QHM KDV+ LL GL+SRER+++ LRFGL + Q KSL++
Sbjct: 441  SIEYNELLPDTTIESPENGVLKQHMKKDVHDLLKGLNSRERQILSLRFGLIDNQPKSLQD 500

Query: 1560 IGRRFSVSKE 1589
            IG  F VSKE
Sbjct: 501  IGTLFKVSKE 510


>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
          Length = 545

 Score =  366 bits (939), Expect = 2e-98
 Identities = 212/500 (42%), Positives = 303/500 (60%), Gaps = 13/500 (2%)
 Frame = +3

Query: 129  GRDSSYVLARVSAASVLYSEAET-QNDTSRTQVLSSSH-QLLEKYFLETRELKVAVGKGS 302
            GR+  +   R+S  S +Y E ET Q D  +T   SSS  ++ E   L+    KV  GK S
Sbjct: 34   GREVFFNPTRLSLLSTVYEEGETLQKDFGKTFAFSSSALEVPEMDLLQGEVTKVNKGKRS 93

Query: 303  ADGLYRLLGSDTQSSNDKEKSASVISSLGMQASQYRLLMKNLDMLEYLFTDSDVVRLERD 482
               ++ ++ +               + L      + LLM+NL +LE  F DS+ +RLE+D
Sbjct: 94   LSSVHEIIDN---------------TQLPFGEPHFGLLMENLGILEETFADSEAMRLEKD 138

Query: 483  ILEHLQRLGALRLFDXXXXXXXXXXXXXXXXXXXXTENVDEPRLNDSIENHVGTVVIXXX 662
            I+  L++LGAL LF+                     E+V E + N  ++N+ G VV+   
Sbjct: 139  IVLKLEKLGALELFNVCLTRSFGTSTESNCTDVVL-EHVKEKKRNFKVDNYTGKVVVQSK 197

Query: 663  XXXXXXXXXXXXXXXXXX----TLQEDXXXXXXXXXXXXX-------NKKLKVARNEAEM 809
                                   L+++                    N++  +A+ E EM
Sbjct: 198  RKENRTRRKQASVAITTSFQSLPLEDNNQEGPLRLPASLVKRVSNTNNRRAVIAQREVEM 257

Query: 810  SSGVKMVAELEKLRMRLEKDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTR 989
            S GVK++AELEK++  +E+D+ +  SLSSWAEA+GV++  LQR+L +G++CRDEL+ STR
Sbjct: 258  SKGVKVLAELEKMKTAIEEDTKQAVSLSSWAEASGVDENVLQRQLYHGYYCRDELIRSTR 317

Query: 990  SLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVA 1169
            SLVL+ AR Y G+G+A EDL+Q G +GVLQGAERFD TRGY+FSTYVQYWIRKSMS +VA
Sbjct: 318  SLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSMSRMVA 377

Query: 1170 RHSRGIRIPSTLGKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVV 1349
            R++RGI IP ++ KA++Q+ KARK L+ ++  YPDD EIAK TGLS+ +I SAS C+R+V
Sbjct: 378  RYARGITIPWSMNKAISQIQKARKLLKSTSMKYPDDHEIAKMTGLSLDRIRSASHCMRIV 437

Query: 1350 GSIDQKVGDFNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSREREVIILRFGL 1529
             S++QK+GD   +YM  + D S  +PEE V +QH+ KD++ +L  LDSRER+++ILRFGL
Sbjct: 438  SSMNQKMGDRGIEYMGYMADMSIESPEETVMKQHIRKDIHDILQSLDSRERQILILRFGL 497

Query: 1530 GNCQCKSLEEIGRRFSVSKE 1589
             + Q KSLE IG+ + VSKE
Sbjct: 498  NDHQPKSLEYIGKIYKVSKE 517


>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
            gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor
            [Medicago truncatula]
          Length = 549

 Score =  361 bits (927), Expect = 5e-97
 Identities = 213/501 (42%), Positives = 305/501 (60%), Gaps = 14/501 (2%)
 Frame = +3

Query: 129  GRDSSYVLARVSAASVLYSEAET-QNDTSRTQVLSSSHQLLEKYFLETREL-KVAVGKGS 302
            GR++ +   R+S  S +Y E ET Q D  +T   SS+ +  EK  L+  EL KV  GK S
Sbjct: 42   GRETLFNPVRLSLLSTVYEEGETLQKDFRKTFAFSSALEAPEKDLLQGGELTKVNKGKRS 101

Query: 303  ADGLYRLLGSDTQSSNDKEKSASVISSLGMQASQYRLLMKNLDMLEYLFTDSDVVRLERD 482
               ++ ++ +               S L  + S + LLM+NL +LE  F DS+ +RLE++
Sbjct: 102  LSSVHEMIDN---------------SHLPFEESHFGLLMENLGVLEETFADSEALRLEKN 146

Query: 483  ILEHLQRLGALRLFDXXXXXXXXXXXXXXXXXXXXTENVDEPRLNDSIENHVGTVVIXXX 662
            I+  L++LGAL LF+                     E V+E + N  ++++ G V++   
Sbjct: 147  IILQLEKLGALELFNVCLTTSFGTSCISNCTHKVL-EQVEENKRNHKVDDYTGKVIVHSS 205

Query: 663  XXXXXXXXXXXXXXXXXXTL-------QEDXXXXXXXXXXXXX----NKKLKVARNEAEM 809
                              +        QED                 NK+  +A+ E EM
Sbjct: 206  KRKENRRRKRGSVSIAPSSRSLPLDDNQEDPLRSSPASFVKRASNTKNKRAVIAQREVEM 265

Query: 810  SSGVKMVAELEKLRMRLEKDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTR 989
            S GVK++AELEK+R  +E+D+ ++ SLSSWAE +GV++K LQ++L +G++CRDEL+ STR
Sbjct: 266  SKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCRDELIRSTR 325

Query: 990  SLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVA 1169
            SLVL+ AR Y G+G+A EDL+Q G +GVLQGAERFD T+GY+FSTYVQYWIRKSMS +VA
Sbjct: 326  SLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRKSMSRMVA 385

Query: 1170 RHSRGIRIPSTLGKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVV 1349
            +++RGI +P ++ KA++Q+ KARK L+ +   YP+D EIAK TGLS+ KI+SAS CLR V
Sbjct: 386  KYARGITVPWSMNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTV 445

Query: 1350 GSIDQKVGDFNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSREREVIILRFGL 1529
             S+ + +     +YM  +PD S  +PEE V +QH+ KD++ +L  LDSRER++IILRFGL
Sbjct: 446  SSMYRGI-----EYMGHMPDLSIESPEETVMKQHIKKDIHDILQSLDSRERQIIILRFGL 500

Query: 1530 G-NCQCKSLEEIGRRFSVSKE 1589
              + Q KSLE IG+ F VSKE
Sbjct: 501  NDDHQPKSLEYIGKIFKVSKE 521


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
            subsp. vesca]
          Length = 545

 Score =  357 bits (916), Expect(2) = 9e-96
 Identities = 173/274 (63%), Positives = 230/274 (83%), Gaps = 1/274 (0%)
 Frame = +3

Query: 771  NKKLKVARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSLSSWAEAAGVEKKELQRRLNY 950
            +++L +A+NEAEMS GVK++A+LE+L++ LEK++G++P+L  WAEAAGV++K LQ++L++
Sbjct: 243  SRRLMMAKNEAEMSVGVKVIADLERLKVTLEKETGKVPTLRCWAEAAGVDEKVLQQQLHF 302

Query: 951  GWHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYV 1130
            GW+C+DEL+ STRSLVL++ARNY GLGVA +DL+QAG +G+LQGAERFD +RGY+FSTYV
Sbjct: 303  GWYCQDELVRSTRSLVLYLARNYRGLGVALDDLLQAGNLGLLQGAERFDPSRGYRFSTYV 362

Query: 1131 QYWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSV 1310
            QYWIRKSMS LVA+H+RGI+IP+TL KA+N++ KARKA   S+  YPDD EIAK TGLS+
Sbjct: 363  QYWIRKSMSRLVAQHARGIKIPNTLSKAINRIQKARKANYNSHMKYPDDEEIAKITGLSL 422

Query: 1311 AKIISASKCLRVVGSIDQKVGDFNT-KYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGL 1487
            AKI SAS+CLRVVGS+D K+ + +   YME  PD +  TPEE+V RQHM  D++ LL+GL
Sbjct: 423  AKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVETPEESVMRQHMKNDIHVLLEGL 482

Query: 1488 DSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            +SRE++V+ LR+GL  C  KSLEEIGR F VSKE
Sbjct: 483  NSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKE 516



 Score = 22.7 bits (47), Expect(2) = 9e-96
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 1619 MRNEESLKILNHYV 1660
            +RNEES K L+HY+
Sbjct: 529  LRNEESNKNLSHYL 542



 Score = 75.9 bits (185), Expect = 6e-11
 Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
 Frame = +3

Query: 33  MGFRLNIKWGGXXXXXXXXXXXXXXXXXXXCRGRDSSYVLARVSAASVLYSEAETQN-DT 209
           +GFRLN+K G                     RGR+ S+  A +S  SV+  E ET + D 
Sbjct: 3   LGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVRGREGSFSSAGLSFLSVISEECETSSKDP 62

Query: 210 SRTQVL-SSSHQLLEKYFLETRELKVAVGKGSADGLYRLLGSDTQSSNDKEKSASVISSL 386
            +     S+S QLL+    E  E K+   + S  G   ++          +K  S +SS 
Sbjct: 63  LKVYTCPSASPQLLDDGLSEMEE-KMNPRRMSKSGSANMID---------DKEYSFMSSA 112

Query: 387 GMQASQYRLLMKNLDMLEYLFTDSDVVRLERDILEHLQRLGALRLFD 527
           G++ S Y LL++NL++LE  F DS V +LE++IL  L RLGAL+LF+
Sbjct: 113 GLRTSHYTLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFE 159


>ref|XP_007161320.1| hypothetical protein PHAVU_001G059800g [Phaseolus vulgaris]
            gi|561034784|gb|ESW33314.1| hypothetical protein
            PHAVU_001G059800g [Phaseolus vulgaris]
          Length = 529

 Score =  351 bits (900), Expect = 7e-94
 Identities = 209/490 (42%), Positives = 289/490 (58%), Gaps = 4/490 (0%)
 Frame = +3

Query: 132  RDSSYVLARVSAASVLYSEAET-QNDTSRTQVLSSSHQLLEKYFLETRELKVAVGKGSAD 308
            +++ +   ++S  +  Y E E  Q D  R    S+    LE   L   E  V  GK S  
Sbjct: 37   KETCFNCTKLSLPTTSYEEGEALQKDFGRVYAFSAL-DTLENESLGREETGVNKGKRSLS 95

Query: 309  GLYRLLGSDTQSSNDKEKSASVISSLGMQASQYRLLMKNLDMLEYLFTDSDVVRLERDIL 488
            G++ +   DTQ    +  S S           +RLLMKNLD+LE  F DS+ +RLE+ I 
Sbjct: 96   GVHEMF-DDTQMPFGEVSSVSKKFE-SFTPQHFRLLMKNLDVLEEAFADSEALRLEKAIR 153

Query: 489  EHLQRLGALRLFDXXXXXXXXXXXXXXXXXXXXTENVDEPRLNDSIENHVGTVVIXXXXX 668
              L++LGAL +F+                      +  + +     +  +G   +     
Sbjct: 154  LQLEKLGALEIFNVYLSLVTDYADKVHNKGKCVVPSSKKKQNKTRRKREIGVTAVSSQSL 213

Query: 669  XXXXXXXXXXXXXXXXTLQEDXXXXXXXXXXXXXN---KKLKVARNEAEMSSGVKMVAEL 839
                              QED             N   K++ VA+ EAEM+ GVK++AEL
Sbjct: 214  TLKVN-------------QEDLLGFSVSVVKRATNSKNKRMMVAKREAEMAKGVKVLAEL 260

Query: 840  EKLRMRLEKDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRDELLTSTRSLVLFIARNY 1019
            EK+R  LE+D+  +  L+ WAEA+GV++K LQ+ L++G++CRDEL+ S+RSLVL++AR Y
Sbjct: 261  EKIRTALEEDTKRVVCLNHWAEASGVDEKVLQQLLHHGYYCRDELVRSSRSLVLYLARKY 320

Query: 1020 WGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHSRGIRIPS 1199
             G+G+A +DL+QAG VGVLQGAERFD TRGYKFSTYVQYWIRKS+  +V R+SRG+ IP 
Sbjct: 321  RGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVERYSRGVIIPW 380

Query: 1200 TLGKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKVGDF 1379
            +L +A+ Q+ KARK L+ ++   PDDCEIAK TGLS+ KI SAS CLR+V SIDQK    
Sbjct: 381  SLNRAIKQIQKARKVLKSTHKKSPDDCEIAKMTGLSLDKIKSASNCLRIVASIDQK---- 436

Query: 1380 NTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEE 1559
                 E++PDT+  +PE  V +QHM KDV+ LL GL+SRER+++ LRFGL + Q KSL++
Sbjct: 437  -----ELLPDTTIESPENGVLKQHMKKDVHDLLKGLNSRERQILSLRFGLIDNQPKSLQD 491

Query: 1560 IGRRFSVSKE 1589
            IG  F VSKE
Sbjct: 492  IGTLFKVSKE 501


>emb|CAB83107.1| sigma factor 3 [Sinapis alba]
          Length = 567

 Score =  348 bits (894), Expect = 3e-93
 Identities = 199/449 (44%), Positives = 277/449 (61%), Gaps = 2/449 (0%)
 Frame = +3

Query: 249  EKYFLETRELKVAVGKGSADGLYRLLGSDTQSSNDKEKSASVISSLGMQASQYRLLMKNL 428
            E  ++E ++ K  +G         L+G    S+     S S++        QY LL KNL
Sbjct: 109  ENVYVELKDPKENIGMC-------LVGDQMSSAEKAHLSRSML--------QYNLLGKNL 153

Query: 429  DMLEYLFTDSDVVRLERDILEHLQRLGALRLFDXXXXXXXXXXXXXXXXXXXXTENVDEP 608
              LE  F   D +R+ERDI+  +++LGA  LF+                     E VD+ 
Sbjct: 154  LALEQTFVALDSLRMERDIMLQMRKLGAAELFNTCLSRSRVSSATSCLPDTGTPELVDDT 213

Query: 609  RLNDSIENHVGTVVIXXXXXXXXXXXXXXXXXXXXXTLQEDXXXXXXXXXXXXXNKKLKV 788
                    H    +                      T  E               K+ ++
Sbjct: 214  TQEQKTFVHSTRKL---RKKARTGNGDQGSSTISSRTTWEGIDVPRVRKPSKYRKKRERI 270

Query: 789  ARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSLSSWAEAAGVEKKELQRRLNYGWHCRD 968
            +RNEAEMS GVK+VA++E++R +LE+++G++ S+S WAEAAG+ +K L   L++GW+CRD
Sbjct: 271  SRNEAEMSQGVKIVADMERIRTKLEEETGKVASMSCWAEAAGMNQKLLMHNLHFGWYCRD 330

Query: 969  ELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWIRK 1148
            EL+ STRSLVLF+ARNY GLG+A EDLIQAG VGVLQGAERFD TRGYKFSTYV+YWIRK
Sbjct: 331  ELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVRYWIRK 390

Query: 1149 SMSTLVARHSRGIRIPSTLGKAVNQVHKARKALRRSNG-TYPDDCEIAKFTGLSVAKIIS 1325
            SMST+V+RH+RG+ IP+++ + ++Q+ KARK L+ S G  YP D EI+K TG S+ KI +
Sbjct: 391  SMSTMVSRHARGVHIPASIIRTMSQIQKARKTLKTSQGIKYPADEEISKLTGYSLKKIRA 450

Query: 1326 ASKCLRVVGSIDQKVGD-FNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGLDSRER 1502
            A++CL+VVGSID+KVGD F T+++E  PD +  +PEEAV RQ    +V+ LL+GL+ RE+
Sbjct: 451  ANQCLKVVGSIDKKVGDCFTTRFLEFTPDPTMESPEEAVMRQSARGEVHNLLEGLEPREK 510

Query: 1503 EVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            +V++LR+GL +   KSLEEIG+   VSKE
Sbjct: 511  QVMVLRYGLQDYSPKSLEEIGKILRVSKE 539


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297323785|gb|EFH54206.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  348 bits (892), Expect = 6e-93
 Identities = 171/274 (62%), Positives = 229/274 (83%), Gaps = 2/274 (0%)
 Frame = +3

Query: 774  KKLKVARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSLSSWAEAAGVEKKELQRRLNYG 953
            K+ ++++NEAEMS+GVK+VA++E++R +LE++SG++ SLS WAEAAG+ +K L R L+YG
Sbjct: 267  KRERISKNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYG 326

Query: 954  WHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQ 1133
            W+CRDELL STRSLVLF+ARNY GLG+A EDLIQAG VGVLQGAERFD TRGYKFSTYVQ
Sbjct: 327  WYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQ 386

Query: 1134 YWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKALRRSNG-TYPDDCEIAKFTGLSV 1310
            YWIRKSMS +V+RH+RG+ IPS++ + +NQ+ KARK L+ S+G  YP D +I+K T LSV
Sbjct: 387  YWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSV 446

Query: 1311 AKIISASKCLRVVGSIDQKVGD-FNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGL 1487
             KI +A++CL+VVGSI++KVGD F+TK++E  PDT+  +PEEAV RQ   +D++ LL+GL
Sbjct: 447  KKIRAANQCLKVVGSIEKKVGDCFSTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGL 506

Query: 1488 DSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            + RE++V++LR+GL N + KSLEEIG+   VSKE
Sbjct: 507  EPREKQVMVLRYGLQNYRPKSLEEIGKLLRVSKE 540


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  344 bits (883), Expect = 6e-92
 Identities = 170/274 (62%), Positives = 226/274 (82%), Gaps = 2/274 (0%)
 Frame = +3

Query: 774  KKLKVARNEAEMSSGVKMVAELEKLRMRLEKDSGEMPSLSSWAEAAGVEKKELQRRLNYG 953
            K+ +++RNE EMS+GVK+VA++E++R +LE++SG++ SLS WA AAG+ +K L R L+YG
Sbjct: 270  KRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYG 329

Query: 954  WHCRDELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQ 1133
            W+CRDEL+ STRSLVLF+ARNY G+G+A EDLIQAG VGVLQGAERFD TRGYKFSTYVQ
Sbjct: 330  WYCRDELVKSTRSLVLFLARNYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQ 389

Query: 1134 YWIRKSMSTLVARHSRGIRIPSTLGKAVNQVHKARKALRRSNG-TYPDDCEIAKFTGLSV 1310
            YWIRKSMST+V+RH+RG+ IPS++ + +N + KARK L+ S+G  Y  D EIAK TG SV
Sbjct: 390  YWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSV 449

Query: 1311 AKIISASKCLRVVGSIDQKVGD-FNTKYMEIIPDTSTATPEEAVFRQHMIKDVYTLLDGL 1487
             KI +A++CL+VVGSID+KVGD F TK++E  PDT+  +PEEAV RQ   +D++ LL+GL
Sbjct: 450  KKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGL 509

Query: 1488 DSREREVIILRFGLGNCQCKSLEEIGRRFSVSKE 1589
            + RE++V++LR+GL + + KSLEEIG+ F VSKE
Sbjct: 510  EPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSKE 543