BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00007117
         (412 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus...   234   1e-59
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   211   9e-53
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   211   9e-53
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   205   5e-51
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   205   6e-51
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   205   6e-51
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   204   1e-50
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   200   2e-49
ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citr...   200   2e-49
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   200   2e-49
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   199   3e-49
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   198   7e-49
gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlise...   195   6e-48
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   194   1e-47
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      193   2e-47
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   189   3e-46
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha...   189   3e-46
gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]               189   3e-46
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   188   6e-46
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps...   188   8e-46

>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
          Length = 478

 Score =  234 bits (596), Expect = 1e-59
 Identities = 116/136 (85%), Positives = 125/136 (91%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DELL ST SLVLFIARNY GLGVAFEDLIQAG +GVLQGAERFDQ+RGYKFSTYVQYW+R
Sbjct: 241 DELLRSTHSLVLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFDQSRGYKFSTYVQYWIR 300

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KSMSTLVA+H+RG+RIP TLSK +NQVHKARKAL  SNG YPDD EIAKFTGLSVAK++S
Sbjct: 301 KSMSTLVAKHARGVRIPCTLSKVINQVHKARKALTTSNGKYPDDYEIAKFTGLSVAKVMS 360

Query: 50  ASKCLRVVGLIDQKIG 3
           ASKCLRVVG IDQKIG
Sbjct: 361 ASKCLRVVGSIDQKIG 376


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           tuberosum]
          Length = 555

 Score =  211 bits (537), Expect = 9e-53
 Identities = 103/136 (75%), Positives = 118/136 (86%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DELL STRSLVL++ARNY GLGVAFEDLIQAG +GVLQGA RFD TRGYKFSTYVQYW+R
Sbjct: 320 DELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIR 379

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KS+S LVA+H+RG+RIP T+ K +NQ+HKARK L RS+G +P D EIAKFTGLS A+I  
Sbjct: 380 KSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAM 439

Query: 50  ASKCLRVVGLIDQKIG 3
           ASKCLRVVG IDQK+G
Sbjct: 440 ASKCLRVVGSIDQKVG 455


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           lycopersicum]
          Length = 551

 Score =  211 bits (537), Expect = 9e-53
 Identities = 103/136 (75%), Positives = 118/136 (86%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DELL STRSLVL++ARNY GLGVAFEDLIQAG +GVLQGA RFD TRGYKFSTYVQYW+R
Sbjct: 316 DELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIR 375

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KS+S LVA+H+RG+RIP T+ K +NQ+HKARK L RS+G +P D EIAKFTGLS A+I  
Sbjct: 376 KSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAM 435

Query: 50  ASKCLRVVGLIDQKIG 3
           ASKCLRVVG IDQK+G
Sbjct: 436 ASKCLRVVGSIDQKVG 451


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  205 bits (522), Expect = 5e-51
 Identities = 100/136 (73%), Positives = 120/136 (88%)
 Frame = -3

Query: 410  DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
            DELL STRSLVL+ ARNY GLG+A EDLIQAG +GVLQGAERFD TRGY+FSTYVQ+W+R
Sbjct: 612  DELLRSTRSLVLYFARNYRGLGIAHEDLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIR 671

Query: 230  KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
            KS+S +VARH+RGI++P TLS+A+ Q+ KARKAL +S+G YPD+  IAKFTGLS+AKI S
Sbjct: 672  KSVSRIVARHARGIQVPCTLSRAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRS 731

Query: 50   ASKCLRVVGLIDQKIG 3
            A+KC+RVVG IDQKIG
Sbjct: 732  ANKCMRVVGSIDQKIG 747


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  205 bits (521), Expect = 6e-51
 Identities = 99/133 (74%), Positives = 117/133 (87%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DELL ST SLVL+IARNY G+GVAFED++QAG +GVLQGAERFD T+GY+FSTYVQYW+R
Sbjct: 325 DELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIR 384

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KSMSTLVARH+RG++IP TL++A+ Q+ KARKAL +S+G YPDD EIAKFTGLS+AKI S
Sbjct: 385 KSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRS 444

Query: 50  ASKCLRVVGLIDQ 12
           A  CLRVVG  DQ
Sbjct: 445 AGNCLRVVGSTDQ 457


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  205 bits (521), Expect = 6e-51
 Identities = 99/133 (74%), Positives = 117/133 (87%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DELL ST SLVL+IARNY G+GVAFED++QAG +GVLQGAERFD T+GY+FSTYVQYW+R
Sbjct: 375 DELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIR 434

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KSMSTLVARH+RG++IP TL++A+ Q+ KARKAL +S+G YPDD EIAKFTGLS+AKI S
Sbjct: 435 KSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRS 494

Query: 50  ASKCLRVVGLIDQ 12
           A  CLRVVG  DQ
Sbjct: 495 AGNCLRVVGSTDQ 507


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  204 bits (518), Expect = 1e-50
 Identities = 100/136 (73%), Positives = 118/136 (86%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DEL+ STRSLVL+ ARNY G G+A EDL+QAG +GVL+GAERFD TRGY+FSTYVQYW+R
Sbjct: 324 DELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIR 383

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KSMS +V+R +RGI+IP TLS+A+ Q+ KARKAL  SNG YPDD EIAK+TGLS+AKI S
Sbjct: 384 KSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIES 443

Query: 50  ASKCLRVVGLIDQKIG 3
           AS+CLRVVG IDQKIG
Sbjct: 444 ASRCLRVVGSIDQKIG 459


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  200 bits (508), Expect = 2e-49
 Identities = 95/136 (69%), Positives = 118/136 (86%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           +EL+ STR LVLF+ARNY GLG+ F DL+QAG VGVLQGAERFD TRGYKFSTYVQYW+R
Sbjct: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KS+S +VARH+RGI+IP  L++ ++++ KARKAL  S+G YP+D EIAK+TGLS+A+I S
Sbjct: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417

Query: 50  ASKCLRVVGLIDQKIG 3
           AS+CLR+VG IDQKIG
Sbjct: 418 ASECLRIVGSIDQKIG 433


>ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553990|gb|ESR64004.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 442

 Score =  200 bits (508), Expect = 2e-49
 Identities = 95/136 (69%), Positives = 118/136 (86%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           +EL+ STR LVLF+ARNY GLG+ F DL+QAG VGVLQGAERFD TRGYKFSTYVQYW+R
Sbjct: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KS+S +VARH+RGI+IP  L++ ++++ KARKAL  S+G YP+D EIAK+TGLS+A+I S
Sbjct: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417

Query: 50  ASKCLRVVGLIDQKIG 3
           AS+CLR+VG IDQKIG
Sbjct: 418 ASECLRIVGSIDQKIG 433


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553989|gb|ESR64003.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  200 bits (508), Expect = 2e-49
 Identities = 95/136 (69%), Positives = 118/136 (86%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           +EL+ STR LVLF+ARNY GLG+ F DL+QAG VGVLQGAERFD TRGYKFSTYVQYW+R
Sbjct: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KS+S +VARH+RGI+IP  L++ ++++ KARKAL  S+G YP+D EIAK+TGLS+A+I S
Sbjct: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417

Query: 50  ASKCLRVVGLIDQKIG 3
           AS+CLR+VG IDQKIG
Sbjct: 418 ASECLRIVGSIDQKIG 433


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
           gi|222854562|gb|EEE92109.1| hypothetical protein
           POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  199 bits (506), Expect = 3e-49
 Identities = 95/136 (69%), Positives = 116/136 (85%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DEL+ +T SLVL+IARNY G+G+A EDLIQAG +G+LQGAERFD TRGY+FSTYVQYW+R
Sbjct: 323 DELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIR 382

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KSM  +V RH+RGI+IP  LS+++N++ KARKAL  S+G YPDD E+AKFTGLS+AKI S
Sbjct: 383 KSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIES 442

Query: 50  ASKCLRVVGLIDQKIG 3
           A KCLRVV  +DQKIG
Sbjct: 443 AQKCLRVVASLDQKIG 458


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
           subsp. vesca]
          Length = 545

 Score =  198 bits (503), Expect = 7e-49
 Identities = 97/135 (71%), Positives = 118/135 (87%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DEL+ STRSLVL++ARNY GLGVA +DL+QAG +G+LQGAERFD +RGY+FSTYVQYW+R
Sbjct: 308 DELVRSTRSLVLYLARNYRGLGVALDDLLQAGNLGLLQGAERFDPSRGYRFSTYVQYWIR 367

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KSMS LVA+H+RGI+IP+TLSKA+N++ KARKA   S+  YPDD EIAK TGLS+AKI S
Sbjct: 368 KSMSRLVAQHARGIKIPNTLSKAINRIQKARKANYNSHMKYPDDEEIAKITGLSLAKISS 427

Query: 50  ASKCLRVVGLIDQKI 6
           AS+CLRVVG +D KI
Sbjct: 428 ASRCLRVVGSVDHKI 442


>gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlisea aurea]
          Length = 463

 Score =  195 bits (495), Expect = 6e-48
 Identities = 92/136 (67%), Positives = 113/136 (83%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           D+LL S+RSLV+FIARNYWGLG+AFEDLIQAG + VL+GAERFDQ+RGYKFSTYVQYW+R
Sbjct: 235 DQLLKSSRSLVVFIARNYWGLGIAFEDLIQAGNMAVLRGAERFDQSRGYKFSTYVQYWIR 294

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KSMS LVA HSRGIRIP T++K +NQV  ARK L  + G  P D E+AK TG+S+ +I S
Sbjct: 295 KSMSMLVANHSRGIRIPGTMNKVINQVQNARKQLCAATGRTPSDLEVAKLTGISLERIRS 354

Query: 50  ASKCLRVVGLIDQKIG 3
           A +C RVVG +D+++G
Sbjct: 355 AGRCPRVVGSVDRRVG 370


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
           gi|462419859|gb|EMJ24122.1| hypothetical protein
           PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  194 bits (493), Expect = 1e-47
 Identities = 95/135 (70%), Positives = 116/135 (85%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DEL+ STRSLVL++ARNY GLGVA +DL+QAG +G+LQGAERFD +RGY+FSTYVQYW+R
Sbjct: 319 DELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLGLLQGAERFDHSRGYRFSTYVQYWIR 378

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           KSMS LVA+H+RG++IP TLSKA+NQ+ KARKA   S+  YPDD EIAK TGLS+A+I S
Sbjct: 379 KSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMKYPDDEEIAKITGLSLARIRS 438

Query: 50  ASKCLRVVGLIDQKI 6
           AS CLRVVG +D K+
Sbjct: 439 ASTCLRVVGSVDHKM 453


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  193 bits (490), Expect = 2e-47
 Identities = 91/136 (66%), Positives = 114/136 (83%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DELL S RSLVL+++R Y GLGVA EDL+QAG +G+LQGAERFD TRGY+FSTYVQYW+R
Sbjct: 313 DELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIR 372

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNGTYPDDCEIAKFTGLSVAKIIS 51
           K+MS LV+RH RGI++P+TLS  +N+V KARK L+RS G +PDD E++K TGLS+ KI S
Sbjct: 373 KAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKS 432

Query: 50  ASKCLRVVGLIDQKIG 3
           A  CLR+VG +DQK+G
Sbjct: 433 ADNCLRIVGSLDQKVG 448


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323785|gb|EFH54206.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  189 bits (481), Expect = 3e-46
 Identities = 93/137 (67%), Positives = 116/137 (84%), Gaps = 1/137 (0%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DELL STRSLVLF+ARNY GLG+A EDLIQAG VGVLQGAERFD TRGYKFSTYVQYW+R
Sbjct: 331 DELLKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIR 390

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNG-TYPDDCEIAKFTGLSVAKII 54
           KSMS +V+RH+RG+ IPS++ + +NQ+ KARK L+ S+G  YP D +I+K T LSV KI 
Sbjct: 391 KSMSMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIR 450

Query: 53  SASKCLRVVGLIDQKIG 3
           +A++CL+VVG I++K+G
Sbjct: 451 AANQCLKVVGSIEKKVG 467


>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
           gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
           polymerase sigma factor sigC; Short=Sigma factor C;
           Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
           sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
           Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
           [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
           [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
           factor SigC [Arabidopsis thaliana]
           gi|7630012|emb|CAB88354.1| sigma factor SigC
           [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1|
           At3g53920 [Arabidopsis thaliana]
           gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit
           C [Arabidopsis thaliana]
          Length = 571

 Score =  189 bits (480), Expect = 3e-46
 Identities = 94/137 (68%), Positives = 115/137 (83%), Gaps = 1/137 (0%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DEL+ STRSLVLF+ARNY GLG+A EDLIQAG VGVLQGAERFD TRGYKFSTYVQYW+R
Sbjct: 334 DELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIR 393

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNG-TYPDDCEIAKFTGLSVAKII 54
           KSMST+V+RH+RG+ IPS++ + +N + KARK L+ S+G  Y  D EIAK TG SV KI 
Sbjct: 394 KSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIR 453

Query: 53  SASKCLRVVGLIDQKIG 3
           +A++CL+VVG ID+K+G
Sbjct: 454 AANQCLKVVGSIDKKVG 470


>gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
          Length = 291

 Score =  189 bits (480), Expect = 3e-46
 Identities = 94/137 (68%), Positives = 115/137 (83%), Gaps = 1/137 (0%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DEL+ STRSLVLF+ARNY GLG+A EDLIQAG VGVLQGAERFD TRGYKFSTYVQYW+R
Sbjct: 54  DELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIR 113

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNG-TYPDDCEIAKFTGLSVAKII 54
           KSMST+V+RH+RG+ IPS++ + +N + KARK L+ S+G  Y  D EIAK TG SV KI 
Sbjct: 114 KSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIR 173

Query: 53  SASKCLRVVGLIDQKIG 3
           +A++CL+VVG ID+K+G
Sbjct: 174 AANQCLKVVGSIDKKVG 190


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  188 bits (478), Expect = 6e-46
 Identities = 93/137 (67%), Positives = 115/137 (83%), Gaps = 1/137 (0%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DEL+ STRSLVLF+ARNY G+G+A EDLIQAG VGVLQGAERFD TRGYKFSTYVQYW+R
Sbjct: 334 DELVKSTRSLVLFLARNYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIR 393

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNG-TYPDDCEIAKFTGLSVAKII 54
           KSMST+V+RH+RG+ IPS++ + +N + KARK L+ S+G  Y  D EIAK TG SV KI 
Sbjct: 394 KSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIR 453

Query: 53  SASKCLRVVGLIDQKIG 3
           +A++CL+VVG ID+K+G
Sbjct: 454 AANQCLKVVGSIDKKVG 470


>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
           gi|482559522|gb|EOA23713.1| hypothetical protein
           CARUB_v10016920mg [Capsella rubella]
          Length = 581

 Score =  188 bits (477), Expect = 8e-46
 Identities = 93/137 (67%), Positives = 114/137 (83%), Gaps = 1/137 (0%)
 Frame = -3

Query: 410 DELLTSTRSLVLFIARNYWGLGVAFEDLIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVR 231
           DELL STRSLVLF+ARNY GLG+A EDLIQAG VGVLQGAERFD  RGYKFSTYVQYW+R
Sbjct: 344 DELLKSTRSLVLFLARNYRGLGIAHEDLIQAGFVGVLQGAERFDHARGYKFSTYVQYWIR 403

Query: 230 KSMSTLVARHSRGIRIPSTLSKAVNQVHKARKALRRSNG-TYPDDCEIAKFTGLSVAKII 54
           KSMS +V+RH+RG+ IPS++ + +NQ+ KARK L+ S+G  YP D EI+K T LSV KI 
Sbjct: 404 KSMSMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEEISKLTSLSVKKIR 463

Query: 53  SASKCLRVVGLIDQKIG 3
           +A++CL+VVG I+ K+G
Sbjct: 464 AANQCLKVVGSIENKVG 480