BLASTX nr result
ID: Mentha24_contig00004443
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha24_contig00004443
(929 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EPS63634.1| hypothetical protein M569_11151 [Genlisea aurea] 313 8e-83
ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, I... 300 4e-79
ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V sub... 299 9e-79
ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, I... 291 2e-76
ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, I... 291 2e-76
ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ri... 291 2e-76
ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, I... 291 3e-76
ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V sub... 289 1e-75
ref|XP_007162116.1| hypothetical protein PHAVU_001G125200g [Phas... 285 1e-74
ref|XP_007202529.1| hypothetical protein PRUPE_ppa010980mg [Prun... 285 1e-74
ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, I... 284 3e-74
ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citr... 282 2e-73
ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III ... 281 3e-73
emb|CBI30093.3| unnamed protein product [Vitis vinifera] 280 4e-73
ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, I... 280 4e-73
ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycin... 279 1e-72
gb|AFK43162.1| unknown [Medicago truncatula] 278 2e-72
gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subun... 278 2e-72
ref|XP_007028544.1| Eukaryotic rpb5 RNA polymerase subunit famil... 277 4e-72
ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Popu... 275 2e-71
>gb|EPS63634.1| hypothetical protein M569_11151 [Genlisea aurea]
Length = 241
Score = 313 bits (801), Expect = 8e-83
Identities = 158/240 (65%), Positives = 190/240 (79%), Gaps = 12/240 (5%)
Frame = +2
Query: 71 KMTEAMDVDGAGEEVNFGSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEV 250
K+ EA + ++ N G+CLSS +D G++ESHRYYLARKTL EML+DRGFA+ ++++
Sbjct: 2 KVEEAAIDETLEDDENLGTCLSSFVDKGSLESHRYYLARKTLLEMLKDRGFAISPADIDI 61
Query: 251 SLQEFRIKHGDLPDVDTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIVQDG-L 427
+LQEFRI+H + P VD L+I++LH DDPSIK LVLFC PGIVKVN +R I + +G +
Sbjct: 62 TLQEFRIRHSESPSVDGLKITALHGDDPSIKVLVLFCGPGIVKVNQIRAIAGDVYNNGTI 121
Query: 428 SKLMLVVQGKITSQALKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLK 607
S L+LV Q KITSQALKAV +L +KVEIFQITDLLVNITKH+LKPKHQ+L+A+EK DLL
Sbjct: 122 SSLILVAQSKITSQALKAVNILKFKVEIFQITDLLVNITKHDLKPKHQILSAEEKADLLS 181
Query: 608 QYCIEEKQ-----------LPRMLQKDAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
+Y IEEKQ LPRMLQKDAIARYYGLEKGQVVKVTY GELTQLHVTYRCVW
Sbjct: 182 KYSIEEKQASKSKKASEAFLPRMLQKDAIARYYGLEKGQVVKVTYGGELTQLHVTYRCVW 241
>ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Solanum lycopersicum]
Length = 227
Score = 300 bits (769), Expect = 4e-79
Identities = 145/225 (64%), Positives = 188/225 (83%), Gaps = 1/225 (0%)
Frame = +2
Query: 83 AMDVDGAGEEVNFGSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQE 262
AMDVDG N G+CL+S +D GTVESHRY+LAR+T+ EML+DRGFA+PN E++ +LQE
Sbjct: 7 AMDVDGE----NLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQE 62
Query: 263 FRIKHGDLPDVDTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLM 439
FR K+G PDV+ LR+S++H++D + K LV+FC P VKVN++R I+++I+ ++ LS+L+
Sbjct: 63 FREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLI 122
Query: 440 LVVQGKITSQALKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCI 619
LV+Q ++T+ ALKAVEL +KVEIFQITDLLVNITKH LKP+H++LT EKE LLK+Y +
Sbjct: 123 LVIQNQMTNPALKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNL 182
Query: 620 EEKQLPRMLQKDAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
EEKQLPRM QKDAIARYYGLEKGQVVKVTY+ E+ + HVTYRCVW
Sbjct: 183 EEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
>ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
tuberosum]
Length = 227
Score = 299 bits (766), Expect = 9e-79
Identities = 144/225 (64%), Positives = 188/225 (83%), Gaps = 1/225 (0%)
Frame = +2
Query: 83 AMDVDGAGEEVNFGSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQE 262
AMDVDG N G+CL+S +D GTVESHRY+LAR+T+ EML+DRGFA+PN E++ +LQE
Sbjct: 7 AMDVDGD----NLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQE 62
Query: 263 FRIKHGDLPDVDTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLM 439
FR K+G PDV+ LR+S++H++D + K LV+FC P VKVN++R I+++I+ ++ LS+L+
Sbjct: 63 FREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLI 122
Query: 440 LVVQGKITSQALKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCI 619
LV+Q ++T+ A+KAVEL +KVEIFQITDLLVNITKH LKP+H++LT EKE LLK+Y +
Sbjct: 123 LVIQNQMTNPAMKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNL 182
Query: 620 EEKQLPRMLQKDAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
EEKQLPRM QKDAIARYYGLEKGQVVKVTY+ E+ + HVTYRCVW
Sbjct: 183 EEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
>ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cicer arietinum]
Length = 244
Score = 291 bits (746), Expect = 2e-76
Identities = 145/212 (68%), Positives = 177/212 (83%), Gaps = 1/212 (0%)
Frame = +2
Query: 122 GSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQEFRIKHGDLPDVDT 301
G CL + ID G+VESHRYYL+R+T EML+DRG+++P E+++SL EFR HG PDVD
Sbjct: 33 GKCLITKIDDGSVESHRYYLSRRTTLEMLKDRGYSIPPSEIQLSLHEFRQTHGHSPDVDR 92
Query: 302 LRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLMLVVQGKITSQALK 478
LR ++ H +PS + LV+F PGIVKVN+VR I +IV +D L+ L+L+VQ +ITSQALK
Sbjct: 93 LRFTATHTTNPSKRILVIFSGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQSQITSQALK 152
Query: 479 AVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCIEEKQLPRMLQKDA 658
AV LL +KVEIFQITDLLVNITKH LKPKHQVLT K+K++LLK+Y I+EKQLPRMLQ DA
Sbjct: 153 AVNLLSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKKNLLKKYNIQEKQLPRMLQTDA 212
Query: 659 IARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
IARYYGLE+GQVVKVTYTGE+TQ+HVTYRCVW
Sbjct: 213 IARYYGLERGQVVKVTYTGEITQMHVTYRCVW 244
>ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Fragaria vesca subsp. vesca]
Length = 225
Score = 291 bits (746), Expect = 2e-76
Identities = 140/221 (63%), Positives = 184/221 (83%), Gaps = 1/221 (0%)
Frame = +2
Query: 95 DGAGEEVNFGSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQEFRIK 274
+G G+EV G CLS +D G+ ESHRY+L+R+T+ EMLRDRG++VP+ E+++SLQ+FR
Sbjct: 5 NGNGDEVVAGPCLSGFVDDGSTESHRYFLSRRTVLEMLRDRGYSVPSSEIDLSLQDFRSL 64
Query: 275 HGDLPDVDTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLMLVVQ 451
HG PD D L S++H DPS + LV++C PGIVKVN++RG+ S+I +D LS L+L++Q
Sbjct: 65 HGQNPDADRLCFSTVHSSDPSERMLVIYCGPGIVKVNVIRGLHSQIANKDTLSGLILILQ 124
Query: 452 GKITSQALKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCIEEKQ 631
G+ITSQALK ++L P+KVEIFQITDLLVNITKH LKP+HQVLT + K+ LLK++ IEEKQ
Sbjct: 125 GQITSQALKTLDLYPFKVEIFQITDLLVNITKHVLKPQHQVLTEQAKQALLKKFNIEEKQ 184
Query: 632 LPRMLQKDAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
LPR+ QKDAIA+YYGLE+GQVVKVTY+G++T+ HVTYRCVW
Sbjct: 185 LPRISQKDAIAKYYGLERGQVVKVTYSGDITKGHVTYRCVW 225
>ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase
II, putative [Ricinus communis]
Length = 238
Score = 291 bits (746), Expect = 2e-76
Identities = 147/233 (63%), Positives = 186/233 (79%), Gaps = 6/233 (2%)
Frame = +2
Query: 74 MTEAMDVDG--AGEEVNF---GSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNC 238
+T A++ +G A E N G C SS D GT E+HRYYL+R+T+ EMLRDRG++VP+
Sbjct: 6 VTAAVNGNGTDASERFNMEGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSS 65
Query: 239 EVEVSLQEFRIKHGDLPDVDTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV- 415
E+++SLQEFR HG PD+D L+ S+ H DPS + LVLF PGI+KV+ +R I +IV
Sbjct: 66 EIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVN 125
Query: 416 QDGLSKLMLVVQGKITSQALKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKE 595
+D L+ L+LV+Q +IT+QA+KAV+L +KVE+FQITDLLVNITKH LKPKHQVLT +EK+
Sbjct: 126 KDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQ 185
Query: 596 DLLKQYCIEEKQLPRMLQKDAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
LLK YCIEEKQLPR+L+KDAIARYYGLEKGQVVKVTY+GE+T+ HVTYRCVW
Sbjct: 186 KLLKDYCIEEKQLPRLLRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238
>ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Solanum lycopersicum]
Length = 227
Score = 291 bits (745), Expect = 3e-76
Identities = 142/227 (62%), Positives = 182/227 (80%), Gaps = 4/227 (1%)
Frame = +2
Query: 86 MDVDGAGEEV---NFGSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSL 256
MDV+G+ EV N CL+S +D GTVESHRY+LARKT+ EML+DRGFA+PN E+E +L
Sbjct: 1 MDVNGSAMEVDVVNVSPCLTSFVDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIETTL 60
Query: 257 QEFRIKHGDLPDVDTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSK 433
QEFR K+G PDV+ LRIS++H+ D + K LV+FC P VK+N++R I+S+I+ ++ LS+
Sbjct: 61 QEFREKYGQRPDVERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRNILSQIMNKESLSR 120
Query: 434 LMLVVQGKITSQALKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQY 613
L+L+++ +T+ A+K VE P+K EIFQITDLLVNITKH LKPKH++LT EKE LLK+Y
Sbjct: 121 LILIIENPMTNPAMKVVEDSPFKTEIFQITDLLVNITKHVLKPKHELLTNAEKEQLLKKY 180
Query: 614 CIEEKQLPRMLQKDAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
+EEKQLPRM QKDAIARYYGLEKGQVVKVTY E+ + H TYRCVW
Sbjct: 181 NLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHATYRCVW 227
>ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
tuberosum]
Length = 227
Score = 289 bits (739), Expect = 1e-75
Identities = 140/227 (61%), Positives = 182/227 (80%), Gaps = 4/227 (1%)
Frame = +2
Query: 86 MDVDGAGEEV---NFGSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSL 256
MDV+G+ EV N CL+S +D GTVESHRY+LARKT+ EML+DRGFA+PN E++ +L
Sbjct: 1 MDVNGSAMEVDVVNVSPCLASFVDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIDTTL 60
Query: 257 QEFRIKHGDLPDVDTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSK 433
QEFR K+G PD + LRIS++H+ D + K LV+FC P VK+N++R I+S+I+ ++ LS+
Sbjct: 61 QEFREKYGQRPDAERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRSILSQIMNKESLSR 120
Query: 434 LMLVVQGKITSQALKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQY 613
L+L+++ +T+ A+K VE P+K EIFQITDLLVNITKH LKPKH++LT EKE LLK+Y
Sbjct: 121 LILIIENPMTNPAMKVVEDSPFKTEIFQITDLLVNITKHVLKPKHELLTNTEKEQLLKKY 180
Query: 614 CIEEKQLPRMLQKDAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
+E+KQLPRM QKDAIARYYGLEKGQVVKVTY E+ + HVTYRCVW
Sbjct: 181 NLEDKQLPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHVTYRCVW 227
>ref|XP_007162116.1| hypothetical protein PHAVU_001G125200g [Phaseolus vulgaris]
gi|561035580|gb|ESW34110.1| hypothetical protein
PHAVU_001G125200g [Phaseolus vulgaris]
Length = 242
Score = 285 bits (730), Expect = 1e-74
Identities = 143/228 (62%), Positives = 180/228 (78%), Gaps = 3/228 (1%)
Frame = +2
Query: 80 EAMDVDGAGEEVN--FGSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVS 253
E + +GA +E CLS ID GTVESHRYYL+R+T EML+DRG+++P+ E+++S
Sbjct: 15 ELAEQEGAEQEETEQVKGCLSKFIDDGTVESHRYYLSRRTTLEMLKDRGYSIPSNEIDLS 74
Query: 254 LQEFRIKHGDLPDVDTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLS 430
L +FR HG PD D LR+S H +PS + LV+FC PG+VKV +R I +IV +D LS
Sbjct: 75 LSQFRHMHGHSPDPDRLRLSLAHATNPSKRILVIFCGPGVVKVTAIRNIAGQIVNRDTLS 134
Query: 431 KLMLVVQGKITSQALKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQ 610
L+L+V+ +TSQALKAV L +KVEIFQITDLLVNITKH LKPKHQVLT ++K++LLK+
Sbjct: 135 GLILIVENHVTSQALKAVGLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKK 194
Query: 611 YCIEEKQLPRMLQKDAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
+ IEEKQLPRMLQ DAIARYYGLE+GQVVKVTY+GE+TQ+HVTYRCVW
Sbjct: 195 FNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEITQMHVTYRCVW 242
>ref|XP_007202529.1| hypothetical protein PRUPE_ppa010980mg [Prunus persica]
gi|462398060|gb|EMJ03728.1| hypothetical protein
PRUPE_ppa010980mg [Prunus persica]
Length = 228
Score = 285 bits (730), Expect = 1e-74
Identities = 134/212 (63%), Positives = 176/212 (83%), Gaps = 1/212 (0%)
Frame = +2
Query: 122 GSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQEFRIKHGDLPDVDT 301
G CL+ +D G+ ESHRYYL+R+T+ EM+RDRG++VP+ E+++SLQ+FR HG PDV+
Sbjct: 17 GPCLTGYVDDGSPESHRYYLSRRTVLEMIRDRGYSVPSSEIDLSLQDFRALHGQNPDVER 76
Query: 302 LRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLMLVVQGKITSQALK 478
LR S+ H+ DPS + +V++C PGIVKVN++RG+ S+I +D L+ L+L+ Q +ITSQALK
Sbjct: 77 LRFSATHRTDPSDRIMVIYCGPGIVKVNVIRGLHSQIANKDTLNGLILITQNQITSQALK 136
Query: 479 AVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCIEEKQLPRMLQKDA 658
+EL P+K EIFQITDLLVNITKH LKPKH VLT +EK+ LLK+Y IEE QLPR+ +KDA
Sbjct: 137 TMELYPFKTEIFQITDLLVNITKHVLKPKHHVLTEQEKQKLLKKYNIEENQLPRLSRKDA 196
Query: 659 IARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
IA+YYGLEKGQVVKVTYTG++T+ HVTYRC+W
Sbjct: 197 IAQYYGLEKGQVVKVTYTGDITESHVTYRCIW 228
>ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1-like
[Cucumis sativus]
Length = 227
Score = 284 bits (727), Expect = 3e-74
Identities = 142/227 (62%), Positives = 176/227 (77%), Gaps = 4/227 (1%)
Frame = +2
Query: 86 MDVDGAGEEVN---FGSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSL 256
M+ DG E N FG+CLSS ID GT ESHRY+L+R+T+ EML+DRG+ + + ++ SL
Sbjct: 1 MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60
Query: 257 QEFRIKHGDLPDVDTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSK 433
Q+FR G PDVD L++S+ H DPS + LV+FC G VKVN +R I +I +D L
Sbjct: 61 QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
Query: 434 LMLVVQGKITSQALKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQY 613
L+L+VQ +IT+QA+KAVEL +KVEIFQITDLLVNITKH LKP HQVLT +EK+ LLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
Query: 614 CIEEKQLPRMLQKDAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
IEEKQLPRML+ DAIARYYGLEKGQVVKVTY G++T+ H+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227
>ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citrus clementina]
gi|568879109|ref|XP_006492520.1| PREDICTED: DNA-directed
RNA polymerase V subunit 5A-like isoform X1 [Citrus
sinensis] gi|557544341|gb|ESR55319.1| hypothetical
protein CICLE_v10021999mg [Citrus clementina]
Length = 236
Score = 282 bits (721), Expect = 2e-73
Identities = 141/211 (66%), Positives = 176/211 (83%), Gaps = 1/211 (0%)
Frame = +2
Query: 125 SCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQEFRIKHGDLPDVDTL 304
SCLS +D G+ +S RYYL+R+T+ EML+DRG+AV E+ +S+Q+FR +G PDVD L
Sbjct: 26 SCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL 85
Query: 305 RISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLMLVVQGKITSQALKA 481
RIS H+ DPS + LV+FC PGIVKVN++R IIS+IV +D L+ L+L++Q +ITSQA KA
Sbjct: 86 RISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA 145
Query: 482 VELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCIEEKQLPRMLQKDAI 661
V L +KVE+FQITDLLVNITKH LKPKHQVLT +EKE LLK+Y IEEKQLPRML+KDAI
Sbjct: 146 VGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
Query: 662 ARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
A+YYGLE+GQVVKVTY+GE+T+ HVTYRCVW
Sbjct: 206 AQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
>ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula] gi|124359979|gb|ABN07995.1| RNA
polymerase subunit, RPB5; RNA polymerase Rpb5,
N-terminal [Medicago truncatula]
gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases
I, II, and III subunit RPABC1 [Medicago truncatula]
Length = 248
Score = 281 bits (718), Expect = 3e-73
Identities = 138/210 (65%), Positives = 176/210 (83%), Gaps = 1/210 (0%)
Frame = +2
Query: 128 CLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQEFRIKHGDLPDVDTLR 307
CL + D G++ESHRYYL+R+T+ EML+DRG+++P+ E+++SL +FR HG PDVD LR
Sbjct: 39 CLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLR 98
Query: 308 ISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLMLVVQGKITSQALKAV 484
+++ H +PS + LV+F PGIVKVN VR I +IV ++ L+ L+L+VQ +ITSQALKAV
Sbjct: 99 LTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAV 158
Query: 485 ELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCIEEKQLPRMLQKDAIA 664
LL +KVEIFQITDLLVN TKH LKPKHQVLT K+K++LLK+Y I+EKQLPRMLQ DAIA
Sbjct: 159 NLLSFKVEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIA 218
Query: 665 RYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
RYYGL++GQVVKVTYTGE+TQ+HVTYRCVW
Sbjct: 219 RYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248
>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 280 bits (717), Expect = 4e-73
Identities = 139/210 (66%), Positives = 170/210 (80%), Gaps = 1/210 (0%)
Frame = +2
Query: 128 CLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQEFRIKHGDLPDVDTLR 307
CLSS +D G +ESHRYYLAR+TL EMLRDRG+++P ++++SLQ+FR + PD D LR
Sbjct: 121 CLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLR 180
Query: 308 ISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLMLVVQGKITSQALKAV 484
IS+ + DPS K LV+FC P +VKVN +R I ++IV +D LSKL+LV+Q ITSQALKAV
Sbjct: 181 ISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAV 240
Query: 485 ELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCIEEKQLPRMLQKDAIA 664
+L ++VE FQITDLLVNITKH LKPKH+VLT +EK LLK+Y + EKQLPRMLQ+DAIA
Sbjct: 241 DLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQDAIA 300
Query: 665 RYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
RYYGLEKGQVVKV Y GE+T HVTYRCVW
Sbjct: 301 RYYGLEKGQVVKVIYNGEITGSHVTYRCVW 330
>ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 280 bits (717), Expect = 4e-73
Identities = 139/210 (66%), Positives = 170/210 (80%), Gaps = 1/210 (0%)
Frame = +2
Query: 128 CLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQEFRIKHGDLPDVDTLR 307
CLSS +D G +ESHRYYLAR+TL EMLRDRG+++P ++++SLQ+FR + PD D LR
Sbjct: 20 CLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLR 79
Query: 308 ISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLMLVVQGKITSQALKAV 484
IS+ + DPS K LV+FC P +VKVN +R I ++IV +D LSKL+LV+Q ITSQALKAV
Sbjct: 80 ISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAV 139
Query: 485 ELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCIEEKQLPRMLQKDAIA 664
+L ++VE FQITDLLVNITKH LKPKH+VLT +EK LLK+Y + EKQLPRMLQ+DAIA
Sbjct: 140 DLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQDAIA 199
Query: 665 RYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
RYYGLEKGQVVKV Y GE+T HVTYRCVW
Sbjct: 200 RYYGLEKGQVVKVIYNGEITGSHVTYRCVW 229
>ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 279 bits (713), Expect = 1e-72
Identities = 136/210 (64%), Positives = 170/210 (80%), Gaps = 1/210 (0%)
Frame = +2
Query: 128 CLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQEFRIKHGDLPDVDTLR 307
CLS +D G+VESHRYYL+R+T EML+DRG+++P+ E+++SL +FR HG PD D LR
Sbjct: 28 CLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLR 87
Query: 308 ISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLMLVVQGKITSQALKAV 484
+S H + S + LV+FC PG+VKV +R +I+ +D L+ L+L+V+ ITSQALKAV
Sbjct: 88 LSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAV 147
Query: 485 ELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCIEEKQLPRMLQKDAIA 664
L +KVEIFQITDLLVNITKH LKPKHQVLT K+K +LLK+Y IEEKQLPRMLQ DAIA
Sbjct: 148 NLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIA 207
Query: 665 RYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
RYYGLE+GQVVKVTY+GE+TQ+HVTYRCVW
Sbjct: 208 RYYGLERGQVVKVTYSGEVTQMHVTYRCVW 237
>gb|AFK43162.1| unknown [Medicago truncatula]
Length = 248
Score = 278 bits (712), Expect = 2e-72
Identities = 137/210 (65%), Positives = 175/210 (83%), Gaps = 1/210 (0%)
Frame = +2
Query: 128 CLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQEFRIKHGDLPDVDTLR 307
CL + D G++ESHRYYL+R+T+ EML+DRG+++P+ E+++SL +FR HG PDVD LR
Sbjct: 39 CLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLR 98
Query: 308 ISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLMLVVQGKITSQALKAV 484
+++ H +PS + LV+F PGIVKVN VR I +IV ++ L+ L+L+VQ +ITSQALKAV
Sbjct: 99 LTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAV 158
Query: 485 ELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCIEEKQLPRMLQKDAIA 664
LL +KVEI QITDLLVN TKH LKPKHQVLT K+K++LLK+Y I+EKQLPRMLQ DAIA
Sbjct: 159 NLLSFKVEILQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIA 218
Query: 665 RYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
RYYGL++GQVVKVTYTGE+TQ+HVTYRCVW
Sbjct: 219 RYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248
>gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
notabilis]
Length = 231
Score = 278 bits (711), Expect = 2e-72
Identities = 141/231 (61%), Positives = 180/231 (77%), Gaps = 4/231 (1%)
Frame = +2
Query: 74 MTEAMDVDGAGEEVN---FGSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEV 244
M E G G E N G+CLSSLID G+VESHRY+L+R TL EML+DRG++VP+ ++
Sbjct: 1 MEENGGSSGGGGEPNGETLGTCLSSLIDKGSVESHRYFLSRITLLEMLKDRGYSVPSSDI 60
Query: 245 EVSLQEFRIKHGDLPDVDTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QD 421
+SL +FR +G +PDVD LR S H DPS + LV+FC PG+VKV VRGI +IV ++
Sbjct: 61 NLSLHDFRQIYGQIPDVDRLRFSVTHLSDPSKRILVIFCEPGVVKVTSVRGIAGQIVNRN 120
Query: 422 GLSKLMLVVQGKITSQALKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDL 601
L+ L+LV+Q ++T+QA KAVELLP+KVEIFQITDLL+NITKH L+PKH+VLT +EK+ L
Sbjct: 121 TLTGLILVLQSQMTNQAQKAVELLPFKVEIFQITDLLINITKHLLRPKHRVLTDQEKQKL 180
Query: 602 LKQYCIEEKQLPRMLQKDAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
LK+Y IE KQLPRM + DAIARYYGLEKGQVVK+ Y+G +T ++TYRCVW
Sbjct: 181 LKKYSIEVKQLPRMSKNDAIARYYGLEKGQVVKIIYSGGITDSYITYRCVW 231
>ref|XP_007028544.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
[Theobroma cacao] gi|508717149|gb|EOY09046.1| Eukaryotic
rpb5 RNA polymerase subunit family protein isoform 1
[Theobroma cacao]
Length = 228
Score = 277 bits (709), Expect = 4e-72
Identities = 140/224 (62%), Positives = 177/224 (79%), Gaps = 1/224 (0%)
Frame = +2
Query: 86 MDVDGAGEEVNFGSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQEF 265
++ DG+ E G CLS ++D G+ ESHRYYL+R+T+ EMLRDRG+AVP E+ +SLQEF
Sbjct: 6 LEGDGSNGEA-LGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLSLQEF 64
Query: 266 RIKHGDLPDVDTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLML 442
R +G PD D LR+S+ HK DPS + LV+F PG+VKV+ +R I I ++ L+ L+L
Sbjct: 65 RAIYGQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLTGLIL 124
Query: 443 VVQGKITSQALKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCIE 622
V+Q IT+QALKA++L +KVEIFQITDLLVNITKH LKPKHQVLT +EK+ LL++Y IE
Sbjct: 125 VLQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQKYSIE 184
Query: 623 EKQLPRMLQKDAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
EKQLPR+L+KDAIARYYG E+GQVVKV Y GE+TQ HVTYRCVW
Sbjct: 185 EKQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCVW 228
>ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Populus trichocarpa]
gi|550320761|gb|EEF05018.2| hypothetical protein
POPTR_0016s03800g [Populus trichocarpa]
Length = 243
Score = 275 bits (703), Expect = 2e-71
Identities = 131/214 (61%), Positives = 175/214 (81%), Gaps = 1/214 (0%)
Frame = +2
Query: 116 NFGSCLSSLIDTGTVESHRYYLARKTLFEMLRDRGFAVPNCEVEVSLQEFRIKHGDLPDV 295
+ G CLSS +D G+ ESHRYYL+R+T+ EML+DRG++VP+ E+++SLQ+FR +G PD+
Sbjct: 30 SLGRCLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDI 89
Query: 296 DTLRISSLHKDDPSIKALVLFCPPGIVKVNMVRGIISRIV-QDGLSKLMLVVQGKITSQA 472
+ L+ S+ HK DPS + LV+FC G+VKV M+R I +I +D L+ L+LV+Q IT+QA
Sbjct: 90 ELLKFSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQA 149
Query: 473 LKAVELLPYKVEIFQITDLLVNITKHELKPKHQVLTAKEKEDLLKQYCIEEKQLPRMLQK 652
+KA++L +K+EIFQITDLLVNITKH LKPKHQVL+ + K+ LLK+Y IEEKQLPR+L+K
Sbjct: 150 MKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLKK 209
Query: 653 DAIARYYGLEKGQVVKVTYTGELTQLHVTYRCVW 754
DAI+RYYGLE+GQVVKVTY G++T HVTYRCVW
Sbjct: 210 DAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW 243