BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00004285
         (1455 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU33906.1| hypothetical protein MIMGU_mgv1a005451mg [Mimulus...   669   0.0  
ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   639   0.0  
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [...   637   e-180
ref|XP_007213527.1| hypothetical protein PRUPE_ppa020640mg [Prun...   630   e-178
ref|XP_002304926.2| pseudouridine synthase family protein [Popul...   627   e-177
ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chlor...   622   e-176
ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chl...   620   e-175
ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citr...   620   e-175
ref|XP_007026021.1| Pseudouridine synthase family protein [Theob...   620   e-175
ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [...   619   e-174
ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chl...   617   e-174
ref|XP_007147743.1| hypothetical protein PHAVU_006G151200g [Phas...   616   e-174
ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chlor...   615   e-173
ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chl...   615   e-173
ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   613   e-173
ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chl...   612   e-172
ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chlor...   608   e-171
gb|EPS61068.1| hypothetical protein M569_13732 [Genlisea aurea]       607   e-171
ref|XP_004158017.1| PREDICTED: RNA pseudourine synthase 6, chlor...   595   e-167
ref|XP_004145102.1| PREDICTED: RNA pseudourine synthase 6, chlor...   594   e-167

>gb|EYU33906.1| hypothetical protein MIMGU_mgv1a005451mg [Mimulus guttatus]
          Length = 483

 Score =  669 bits (1725), Expect = 0.0
 Identities = 324/426 (76%), Positives = 357/426 (83%), Gaps = 10/426 (2%)
 Frame = +3

Query: 3    RNLSSRATAPADFSTNISVPTCNN-SYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYI 179
            RN S  +TA A  ST+ S+ T NN SYPPY RLLPCPSQNGPPRVEH VV EG  VLDYI
Sbjct: 60   RNRSCESTASAYVSTDSSISTSNNNSYPPYGRLLPCPSQNGPPRVEHFVVTEGGPVLDYI 119

Query: 180  VKALNLPPLFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKT 359
             K+LN+P  FVADLIHFGAVFYALVCP PP TATPEQI  FK++TDPSLLRKRSSIKGKT
Sbjct: 120  SKSLNIPSPFVADLIHFGAVFYALVCPDPPPTATPEQINFFKEYTDPSLLRKRSSIKGKT 179

Query: 360  VREAQKTFRITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 539
             REAQKTFRI+RTDEF+E GTYLRVHVHPKRFPRCYE DW+SR+IAV ESYVVLDKPAGT
Sbjct: 180  FREAQKTFRISRTDEFVETGTYLRVHVHPKRFPRCYETDWRSRVIAVAESYVVLDKPAGT 239

Query: 540  SVGGTTDNIEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDX 719
            SVGGTTDNIEE+C TF TRALGL+APL+TTHQIDNCTEGCVVLARTKEYCSVFH KIR+ 
Sbjct: 240  SVGGTTDNIEESCVTFTTRALGLEAPLITTHQIDNCTEGCVVLARTKEYCSVFHGKIREK 299

Query: 720  XXXXXXXXXXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDI 899
                        PVS+G+ITHYMRPVNIAPRLVSED ++GWHLCQLEVLECRK+PWP+ I
Sbjct: 300  KVKKLYLALAAAPVSIGVITHYMRPVNIAPRLVSEDLVNGWHLCQLEVLECRKIPWPSSI 359

Query: 900  IEEKYRIEDCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEG 1079
             EEK R+EDCGWP+  KDFAYEC +NLLTGRTHQIRAQ AA GAPLVGD+MYMPAA+AE 
Sbjct: 360  AEEKNRVEDCGWPS--KDFAYECKVNLLTGRTHQIRAQFAACGAPLVGDSMYMPAAIAEV 417

Query: 1080 ESPGLNPFGKNKKDCSN-------VEEWIAHHGKEPIAAIGLQACRISWDDGD--HAYEA 1232
            + P LNPFGKNKK+ ++       VEEWIA HGKEPI AIGLQAC+ISWD  +  H+YEA
Sbjct: 418  DRPELNPFGKNKKEYASDDIKAVAVEEWIARHGKEPIVAIGLQACKISWDSDEEQHSYEA 477

Query: 1233 GSPWWR 1250
            G PWWR
Sbjct: 478  GRPWWR 483


>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
            gi|302144082|emb|CBI23187.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  639 bits (1648), Expect = 0.0
 Identities = 311/415 (74%), Positives = 345/415 (83%), Gaps = 7/415 (1%)
 Frame = +3

Query: 24   TAPADFSTNISVPTCNNSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIVKALNLPP 203
            TA +D +   SV    N YP Y RLLPCPSQNGPPRVEHLVV EG  VLDYI KAL+LPP
Sbjct: 63   TASSDSANTSSV----NGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLPP 118

Query: 204  LFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTVREAQKTF 383
            LFVADLIHFGAV+YALVCP PP +ATPEQ++ FK+ T PS+LRKR SIKGKT+REAQKTF
Sbjct: 119  LFVADLIHFGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKTF 178

Query: 384  RITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDN 563
            RIT  +EF+EAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDN
Sbjct: 179  RITDVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDN 238

Query: 564  IEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXXXXXXXXX 743
            IEE+CATFATRALGL  PL TTHQIDNCTEGCVVLARTKEYCSVFH KIR+         
Sbjct: 239  IEESCATFATRALGLTTPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRA 298

Query: 744  XXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDIIEEKYRIE 923
                P+ +GI+THYMRPVNIAPRL+SEDFI GW+LCQLEVLEC++VPWP+ +IEEKY IE
Sbjct: 299  LAAAPMPIGIVTHYMRPVNIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCIE 358

Query: 924  DCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGESPGLNPF 1103
            D GWP K+   A++C +NLLTGRTHQIRAQLAA GAP+VGD+MYMPAA+AE  SPGLNPF
Sbjct: 359  DRGWPLKNS--AFKCKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPF 416

Query: 1104 GKNKKDCSN-------VEEWIAHHGKEPIAAIGLQACRISWDDGDHAYEAGSPWW 1247
            GK KK  +        V EWIA HGKEP  AIGLQAC+ISWDDG+H Y+AGSPWW
Sbjct: 417  GKYKKKYTTENDRETAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471


>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 476

 Score =  637 bits (1642), Expect = e-180
 Identities = 307/411 (74%), Positives = 342/411 (83%), Gaps = 7/411 (1%)
 Frame = +3

Query: 39   FSTNISVPTCNNSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIVKALNLPPLFVAD 218
            ++TN S   C N    Y+RLLPCPS N PPR+EHLVV+E   VLDYI KAL+LPPLFVAD
Sbjct: 67   YTTNTS---CVNGNSDYDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICKALDLPPLFVAD 123

Query: 219  LIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTVREAQKTFRITRT 398
            LI FGAV YALVCP PP TATPEQI+ F+KFT PS+L+KRSSIKGKTVREAQKTFRIT  
Sbjct: 124  LIDFGAVHYALVCPRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVREAQKTFRITHV 183

Query: 399  DEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEETC 578
            D++LEAGTYLRVHVHPKRFPRCY+IDWKSRIIAVT+ YVVLDKPAGTSVGGT DNIEE+C
Sbjct: 184  DQYLEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADNIEESC 243

Query: 579  ATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXXXXXXXXXXXXXP 758
            ATFATRALGL  PL TTHQIDNCTEGCVVLAR+KEYCSVFH KIR+             P
Sbjct: 244  ATFATRALGLTTPLKTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAASP 303

Query: 759  VSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDIIEEKYRIEDCGWP 938
            V VG+I +YMRPVNIAPRL+SE+F++GWHLCQLEVLECRKVPWP+  IEEKY +EDCGWP
Sbjct: 304  VPVGVIKNYMRPVNIAPRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVEDCGWP 363

Query: 939  TKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGESPGLNPFGKNKK 1118
            +  KDFAYEC +NLLTGRTHQIRAQLAA GAPLVGD+MYMPAAVAE  +PGLNPFGK++K
Sbjct: 364  S--KDFAYECKINLLTGRTHQIRAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGKHRK 421

Query: 1119 DCSN-------VEEWIAHHGKEPIAAIGLQACRISWDDGDHAYEAGSPWWR 1250
              +N       V EW+A HGKEP  AIGLQAC ISWD+G H Y+AGSPWWR
Sbjct: 422  QYTNESDESMAVAEWVAQHGKEPKVAIGLQACEISWDEGKHIYKAGSPWWR 472


>ref|XP_007213527.1| hypothetical protein PRUPE_ppa020640mg [Prunus persica]
            gi|462409392|gb|EMJ14726.1| hypothetical protein
            PRUPE_ppa020640mg [Prunus persica]
          Length = 477

 Score =  630 bits (1625), Expect = e-178
 Identities = 297/400 (74%), Positives = 334/400 (83%), Gaps = 7/400 (1%)
 Frame = +3

Query: 72   NSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIVKALNLPPLFVADLIHFGAVFYAL 251
            N YP Y RLLPCPS NGPPRVEHLVV EG  VL+YI K L+LPP FVADLIHFGAV+YAL
Sbjct: 78   NGYPEYTRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKTLDLPPQFVADLIHFGAVYYAL 137

Query: 252  VCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTVREAQKTFRITRTDEFLEAGTYLR 431
            VCP PP TATPEQ++ FK+ T PS+L+ R+SIKGKTVREAQKTFRIT  DEF+EAGTYLR
Sbjct: 138  VCPKPPPTATPEQMRVFKEVTAPSVLKNRASIKGKTVREAQKTFRITHADEFVEAGTYLR 197

Query: 432  VHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEETCATFATRALGLD 611
            VHVHPKRFPRCY+IDWKSRIIAV+E +VVLDKPAGT+VGGTTDNIEE+CATFATRALGL 
Sbjct: 198  VHVHPKRFPRCYDIDWKSRIIAVSEEFVVLDKPAGTTVGGTTDNIEESCATFATRALGLT 257

Query: 612  APLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXXXXXXXXXXXXXPVSVGIITHYMR 791
             PL TTHQIDNCTEGCVVLARTKEYCSVFH KIR+             PV  GIITHYMR
Sbjct: 258  TPLNTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALAAAPVPTGIITHYMR 317

Query: 792  PVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDIIEEKYRIEDCGWPTKHKDFAYECT 971
            P+N+APRL+SEDFI  W LCQLEV+EC+++PWPN ++EEKY +EDCGWP+  KD+AYEC 
Sbjct: 318  PINVAPRLISEDFIERWSLCQLEVMECKEIPWPNAVVEEKYCVEDCGWPS--KDYAYECK 375

Query: 972  LNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGESPGLNPFGKNKKDCSN------- 1130
            +NLLTGRTHQ+RAQLAA GAP+VGD+MYMPAAVAE ESPGLNPFG+ KK  +        
Sbjct: 376  INLLTGRTHQVRAQLAACGAPIVGDSMYMPAAVAEMESPGLNPFGQYKKHYTTENDKETA 435

Query: 1131 VEEWIAHHGKEPIAAIGLQACRISWDDGDHAYEAGSPWWR 1250
            V EWIA HGKEP  AIGLQAC+ISWDDG H +EA +PWWR
Sbjct: 436  VAEWIARHGKEPNVAIGLQACQISWDDGKHTFEARAPWWR 475


>ref|XP_002304926.2| pseudouridine synthase family protein [Populus trichocarpa]
            gi|550340110|gb|EEE85437.2| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 470

 Score =  627 bits (1618), Expect = e-177
 Identities = 303/425 (71%), Positives = 342/425 (80%), Gaps = 10/425 (2%)
 Frame = +3

Query: 6    NLSSRATAPADFSTNISVPTCN---NSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDY 176
            +LS R  +      +I+  T     N YP Y RLLPCPS N PPR+EHLVV E   VLDY
Sbjct: 44   SLSKRKLSCESLKQDIACTTATSSVNGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDY 103

Query: 177  IVKALNLPPLFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGK 356
            I KAL+LPPLFVADLIHFGAV YALVCP PP TATPEQI+ F++ T PS+L+KR+SIKGK
Sbjct: 104  ICKALDLPPLFVADLIHFGAVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGK 163

Query: 357  TVREAQKTFRITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAG 536
            TVREAQKTFRIT  D+FLEAG YLRVHVHPKRFPRCY+IDWKSRII VTES+VVLDKPAG
Sbjct: 164  TVREAQKTFRITHVDQFLEAGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAG 223

Query: 537  TSVGGTTDNIEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRD 716
            TSVGGTTDNIEE+CATFATRALGL APL TTHQIDNCTEGCVVLART+E CSVFH KIR+
Sbjct: 224  TSVGGTTDNIEESCATFATRALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIRE 283

Query: 717  XXXXXXXXXXXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPND 896
                         PV +G++ HYMRP+N+APRLVSE+FI GWHLCQLEV+EC++VPWP+ 
Sbjct: 284  KTVKKLYIALAASPVPIGVVNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDA 343

Query: 897  IIEEKYRIEDCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAE 1076
            ++EEKY ++DCGWP+  KD AYEC +NLLTGRTHQIRAQLAA GAPLVGD+MYMPAAVAE
Sbjct: 344  VMEEKYCVQDCGWPS--KDHAYECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAE 401

Query: 1077 GESPGLNPFGKNKKDCSN-------VEEWIAHHGKEPIAAIGLQACRISWDDGDHAYEAG 1235
              SPG NPFGK KK  ++       VEEW+  HGKEP  AIGLQAC+ISWDDG H Y AG
Sbjct: 402  MVSPGCNPFGKYKKQYTSEDDKAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAG 461

Query: 1236 SPWWR 1250
            SPWWR
Sbjct: 462  SPWWR 466


>ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
            sativus]
          Length = 475

 Score =  622 bits (1605), Expect = e-176
 Identities = 307/429 (71%), Positives = 346/429 (80%), Gaps = 13/429 (3%)
 Frame = +3

Query: 3    RNLSSRATA-PADFS-TNISVPTCNNS----YPPYERLLPCPSQNGPPRVEHLVVIEGCT 164
            R+L S+++A P   S T+++V T  NS    YP Y RLLPCPS + PPRVEH+VV+E   
Sbjct: 45   RSLGSKSSAFPCKSSITDVTVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGP 104

Query: 165  VLDYIVKALNLPPLFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSS 344
            V++YI K+LNLPPL+VADLIHFGAV+YALVCP PP TATPEQI+ FKKFT+PS L+ R S
Sbjct: 105  VMEYICKSLNLPPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKS 164

Query: 345  IKGKTVREAQKTFRITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLD 524
            IKGKTVREAQKTFRIT  DEF+E GTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLD
Sbjct: 165  IKGKTVREAQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLD 224

Query: 525  KPAGTSVGGTTDNIEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHA 704
            KPAGTSVGGTTDNIEE+CATFATRALGL +PL TTHQIDNCTEGCV+ ARTKEYCS+FH 
Sbjct: 225  KPAGTSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHG 284

Query: 705  KIRDXXXXXXXXXXXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVP 884
            KIR+             PV +GIITHYMRP+NIAPRLVS+D I GW +CQLEVLECR+V 
Sbjct: 285  KIREKKVMKLYLALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVS 344

Query: 885  WPNDIIEEKYRIEDCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPA 1064
            WP+  IE KYR+EDCGWP+K K  AYEC +NLLTGRTHQIRAQLA  GAPLVGD+MYMPA
Sbjct: 345  WPDADIEAKYRVEDCGWPSKKK--AYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPA 402

Query: 1065 AVAEGESPGLNPFGKNKKDCSN-------VEEWIAHHGKEPIAAIGLQACRISWDDGDHA 1223
             VAE  SPGLNPFGK KK+ +N       V EW A HGKEP  AIGLQA  ISWD  +H+
Sbjct: 403  VVAEMGSPGLNPFGKCKKEYTNEEDKETAVAEWSALHGKEPAVAIGLQAYEISWDSREHS 462

Query: 1224 YEAGSPWWR 1250
            Y AG+PWWR
Sbjct: 463  YNAGTPWWR 471


>ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Glycine max]
          Length = 478

 Score =  620 bits (1599), Expect = e-175
 Identities = 291/426 (68%), Positives = 344/426 (80%), Gaps = 11/426 (2%)
 Frame = +3

Query: 6    NLSSRATAPADFST----NISVPTCNNSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLD 173
            N ++     A+FST    N++  + ++S+P Y+RLLPCPS   PPR+EHLV+ EG  VL+
Sbjct: 54   NSNTALAGEAEFSTTDAGNLTATSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLE 113

Query: 174  YIVKALNLPPLFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKG 353
             I KAL+LPPL+V+DLI FGAV+YALVCP PP  AT EQI+ FK+ T+PS+LRKR+SIKG
Sbjct: 114  LICKALDLPPLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKG 173

Query: 354  KTVREAQKTFRITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPA 533
            KTVREAQKTFR+T  D+F+E GTYLRVHVHPKRFPR YEIDW+SRIIAV ESYVVLDKPA
Sbjct: 174  KTVREAQKTFRVTHVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPA 233

Query: 534  GTSVGGTTDNIEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIR 713
            GTSVGGTTDNIEE+CATFATRALG+  PLMTTHQIDNCTEGCVVLARTK+YCS+FH KIR
Sbjct: 234  GTSVGGTTDNIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKDYCSIFHGKIR 293

Query: 714  DXXXXXXXXXXXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPN 893
            +             P+  GIITHYMRP+N+APRL+SEDFI GWHLCQLEVLECRK+PWP 
Sbjct: 294  EKKVKKLYLALAASPLPTGIITHYMRPINMAPRLISEDFIKGWHLCQLEVLECRKIPWPT 353

Query: 894  DIIEEKYRIEDCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVA 1073
              I++KY +EDCGWP+  +D+AYEC +NLLTG+THQIRAQ AA  APL+GD+MYMPAA+A
Sbjct: 354  TAIQDKYCVEDCGWPS--QDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIA 411

Query: 1074 EGESPGLNPFGKNKKDCSNVEE-------WIAHHGKEPIAAIGLQACRISWDDGDHAYEA 1232
            +  +PGLNPFGK KKD S+  E       W+A HGKEP  AIGLQAC+ISWDD +H YEA
Sbjct: 412  DVSNPGLNPFGKYKKDFSSESEKETAVVNWMAQHGKEPSVAIGLQACQISWDDDEHFYEA 471

Query: 1233 GSPWWR 1250
            G PWWR
Sbjct: 472  GLPWWR 477


>ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citrus clementina]
            gi|557551677|gb|ESR62306.1| hypothetical protein
            CICLE_v10015055mg [Citrus clementina]
          Length = 487

 Score =  620 bits (1599), Expect = e-175
 Identities = 294/400 (73%), Positives = 335/400 (83%), Gaps = 7/400 (1%)
 Frame = +3

Query: 78   YPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIVKALNLPPLFVADLIHFGAVFYALVC 257
            YP Y RLLPCPSQN PPRVEHLVV EG  VL+YI + LNLPPLFVADLIHFGAV+YALVC
Sbjct: 83   YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142

Query: 258  PSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTVREAQKTFRITRTDEFLEAGTYLRVH 437
            P PP TATPEQ++ FK+ TDPS+L KRSSIKGKTVREAQKTFRIT  D+ +EAGTYLRVH
Sbjct: 143  PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202

Query: 438  VHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEETCATFATRALGLDAP 617
            VHPKRFPRCY+IDWKSRIIAVTES+VVLDKPAGTSVGGTTDNIEE+CATFA+RALGL  P
Sbjct: 203  VHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262

Query: 618  LMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXXXXXXXXXXXXXPVSVGIITHYMRPV 797
            L TTHQIDNCTEGCVVLART+EYCS+FH KIR+             P+ VGI+THYMRP+
Sbjct: 263  LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPI 322

Query: 798  NIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDIIEEKYRIEDCGWPTKHKDFAYECTLN 977
            NIAPRL+SEDFI GW+LCQLEV+EC+KVPWP+  + + Y IEDCGWP+  +D+AYEC + 
Sbjct: 323  NIAPRLISEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS--RDYAYECKIK 380

Query: 978  LLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGESPGLNPFGKNKKDCSN-------VE 1136
            LLTGRTHQ+RAQLAA GAP+VGD+MYMPAA+A+  SPGLNPFGK +K+ ++       V 
Sbjct: 381  LLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVI 440

Query: 1137 EWIAHHGKEPIAAIGLQACRISWDDGDHAYEAGSPWWR*K 1256
            EWI+ HGKEP  AIGLQAC ISWDDG+  YEA SPWWR K
Sbjct: 441  EWISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWRCK 480


>ref|XP_007026021.1| Pseudouridine synthase family protein [Theobroma cacao]
            gi|508781387|gb|EOY28643.1| Pseudouridine synthase family
            protein [Theobroma cacao]
          Length = 491

 Score =  620 bits (1598), Expect = e-175
 Identities = 293/398 (73%), Positives = 331/398 (83%), Gaps = 6/398 (1%)
 Frame = +3

Query: 75   SYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIVKALNLPPLFVADLIHFGAVFYALV 254
            SYP Y RLLPCPS NGPPRVEHLVV EG  VL+YI KAL+LPP+FVADLIHFGAV+YALV
Sbjct: 92   SYPEYHRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKALDLPPMFVADLIHFGAVYYALV 151

Query: 255  CPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTVREAQKTFRITRTDEFLEAGTYLRV 434
            CP PP +ATPEQI+ FK+ T PS+L KR+SI+GKTVREAQKTFRIT  D+F+EAGTYLRV
Sbjct: 152  CPQPPPSATPEQIRIFKEVTAPSVLSKRTSIRGKTVREAQKTFRITHVDQFVEAGTYLRV 211

Query: 435  HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEETCATFATRALGLDA 614
            HVHPKRFPRCYEIDWKSRIIAVT+SYVVLDKPAGTSVGGTTDNIEE+CATFA RALG   
Sbjct: 212  HVHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTTDNIEESCATFANRALGFST 271

Query: 615  PLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXXXXXXXXXXXXXPVSVGIITHYMRP 794
            PL TTHQIDNCTEGCVVLARTKEYCSVFH KIR+             P+ +G+ITHYMRP
Sbjct: 272  PLKTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTAAPLPIGVITHYMRP 331

Query: 795  VNIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDIIEEKYRIEDCGWPTKHKDFAYECTL 974
            +N+APRLVSEDFI GW+LCQLEV+EC+KVPWP+ +I+E Y IED GWP   KD AYEC +
Sbjct: 332  INMAPRLVSEDFIKGWYLCQLEVMECKKVPWPDYVIQENYCIEDSGWPL--KDHAYECKI 389

Query: 975  NLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGESPGLNPFGKNKKDCSN------VE 1136
            NLLTGRTHQ+RAQLAA GAP++GD+MYMP  +AE  +PGLNPFGK KK  S       + 
Sbjct: 390  NLLTGRTHQVRAQLAACGAPILGDSMYMPPTIAEIANPGLNPFGKYKKHTSENDKEIAIT 449

Query: 1137 EWIAHHGKEPIAAIGLQACRISWDDGDHAYEAGSPWWR 1250
            EWI+  GKEP  AIGLQAC+ISWDDG+H Y+A SPWWR
Sbjct: 450  EWISQFGKEPSVAIGLQACQISWDDGEHFYKARSPWWR 487


>ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542359|gb|EEF43901.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 395

 Score =  619 bits (1595), Expect = e-174
 Identities = 296/395 (74%), Positives = 328/395 (83%), Gaps = 7/395 (1%)
 Frame = +3

Query: 87   YERLLPCPSQNGPPRVEHLVVIEGCTVLDYIVKALNLPPLFVADLIHFGAVFYALVCPSP 266
            Y+RLLPCPSQN PPRVEHLVV+E   VLDYI KAL+LPPLFVADLIHFGAV YALVCP P
Sbjct: 3    YDRLLPCPSQNRPPRVEHLVVLEEGPVLDYICKALDLPPLFVADLIHFGAVHYALVCPQP 62

Query: 267  PATATPEQIKAFKKFTDPSLLRKRSSIKGKTVREAQKTFRITRTDEFLEAGTYLRVHVHP 446
            P TATPEQI+ F++FT PS+L+KR+SIKGKTVREAQKTFR++   +FLE GTYLRV+VHP
Sbjct: 63   PPTATPEQIRLFEEFTAPSVLKKRASIKGKTVREAQKTFRVSSVHQFLEVGTYLRVYVHP 122

Query: 447  KRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEETCATFATRALGLDAPLMT 626
            +RFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTT+NIEETCATFATRALGL  PL T
Sbjct: 123  RRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTNNIEETCATFATRALGLTIPLKT 182

Query: 627  THQIDNCTEGCVVLARTKEYCSVFHAKIRDXXXXXXXXXXXXXPVSVGIITHYMRPVNIA 806
            THQIDNCTEGCVVLART EYC VFH KIR+             PV VG+ITHYMRP NI 
Sbjct: 183  THQIDNCTEGCVVLARTNEYCPVFHGKIRENKVKKLYLALAACPVPVGVITHYMRPGNIP 242

Query: 807  PRLVSEDFISGWHLCQLEVLECRKVPWPNDIIEEKYRIEDCGWPTKHKDFAYECTLNLLT 986
            PRLVSE+FI GW+LCQLEVLECRKVPWP+ + EEKY +EDCGWP+  KDFAYEC +NLLT
Sbjct: 243  PRLVSEEFIEGWYLCQLEVLECRKVPWPDTVTEEKYSVEDCGWPS--KDFAYECKINLLT 300

Query: 987  GRTHQIRAQLAARGAPLVGDTMYMPAAVAEGESPGLNPFGKNKK-------DCSNVEEWI 1145
            GRTHQIRAQLAA GAPLVGD+MYMPAA+AE  +PG+NPFGK+KK       +   V EW+
Sbjct: 301  GRTHQIRAQLAACGAPLVGDSMYMPAAIAEMANPGVNPFGKHKKQYTGENDESMGVAEWV 360

Query: 1146 AHHGKEPIAAIGLQACRISWDDGDHAYEAGSPWWR 1250
              HGKEP  AIGLQAC ISW D  H Y+AG PWWR
Sbjct: 361  ERHGKEPSIAIGLQACEISWGDSKHIYKAGPPWWR 395


>ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Citrus sinensis] gi|568827302|ref|XP_006468003.1|
            PREDICTED: RNA pseudouridine synthase 6,
            chloroplastic-like isoform X2 [Citrus sinensis]
          Length = 487

 Score =  617 bits (1590), Expect = e-174
 Identities = 293/400 (73%), Positives = 334/400 (83%), Gaps = 7/400 (1%)
 Frame = +3

Query: 78   YPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIVKALNLPPLFVADLIHFGAVFYALVC 257
            YP Y RLLPCPSQN PPRVEHLVV EG  VL+YI + LNLPPLFVADLIHFGAV+YALVC
Sbjct: 83   YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142

Query: 258  PSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTVREAQKTFRITRTDEFLEAGTYLRVH 437
            P PP TATPEQ++ FK+ TDPS+L KRSSIKGKTVREAQKTFRIT  D+ +EAGTYLRVH
Sbjct: 143  PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202

Query: 438  VHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEETCATFATRALGLDAP 617
            VHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTTDNIEE+CATFA+RALGL  P
Sbjct: 203  VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262

Query: 618  LMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXXXXXXXXXXXXXPVSVGIITHYMRPV 797
            L TTHQIDNCTEGCVVLART+EYCS+FH KIR+             P+ VGI+THYMRP+
Sbjct: 263  LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322

Query: 798  NIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDIIEEKYRIEDCGWPTKHKDFAYECTLN 977
            NIAPRLVSEDFI+GW+LCQLEV+EC+KVPWP+  + + Y IEDCGWP+  +D+AYEC + 
Sbjct: 323  NIAPRLVSEDFITGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS--RDYAYECKIK 380

Query: 978  LLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGESPGLNPFGKNKKDCSN-------VE 1136
            LLTGRTHQ+RAQLAA GAP+VGD+MYMPAA+A+  SPGLNPFGK +K+ ++       V 
Sbjct: 381  LLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVI 440

Query: 1137 EWIAHHGKEPIAAIGLQACRISWDDGDHAYEAGSPWWR*K 1256
            EWI+ HG EP  AIGLQAC ISWDDG+  YEA SPWWR K
Sbjct: 441  EWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCK 480


>ref|XP_007147743.1| hypothetical protein PHAVU_006G151200g [Phaseolus vulgaris]
            gi|561020966|gb|ESW19737.1| hypothetical protein
            PHAVU_006G151200g [Phaseolus vulgaris]
          Length = 478

 Score =  616 bits (1589), Expect = e-174
 Identities = 295/426 (69%), Positives = 341/426 (80%), Gaps = 11/426 (2%)
 Frame = +3

Query: 6    NLSSRATAPADFST----NISVPTCNNSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLD 173
            N  +   A ++FS     N++  + +NS P Y+RLLPCP    PPRVEHLVV EG  VL+
Sbjct: 54   NSYTAIAAESEFSKTDAENLTATSSSNSLPKYDRLLPCPLHKTPPRVEHLVVSEGGPVLE 113

Query: 174  YIVKALNLPPLFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKG 353
            +I KAL LPPL+V DLI FGAV+YALVCP PP +AT EQI+ FK+ T+PS+LR+R+SIKG
Sbjct: 114  HICKALELPPLYVTDLIQFGAVYYALVCPQPPPSATEEQIRVFKEVTEPSVLRQRASIKG 173

Query: 354  KTVREAQKTFRITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPA 533
            KTVREAQKTFR+T  D+F+E GTYLRVHVHPKRFPRCYEIDW+SRII+V ESYVVLDKPA
Sbjct: 174  KTVREAQKTFRVTHADQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIISVAESYVVLDKPA 233

Query: 534  GTSVGGTTDNIEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIR 713
            GTSVGGTTDNIEE+CATFATRALGL APLMTTHQIDNCTEGCVVLARTKEYCSVFH KIR
Sbjct: 234  GTSVGGTTDNIEESCATFATRALGLTAPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIR 293

Query: 714  DXXXXXXXXXXXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPN 893
            +             P+  GIITHYMRP+N+APRL+SEDFI GW +CQLE+ ECRKVPWP 
Sbjct: 294  EKKVKKLYLALASSPLPTGIITHYMRPINMAPRLISEDFIKGWLMCQLEIQECRKVPWPT 353

Query: 894  DIIEEKYRIEDCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVA 1073
              I++KY +EDCGWP  ++DFAYEC +NLLTGRTHQIRAQ AA  APLVGD+MYMPAA+ 
Sbjct: 354  PSIQDKYCVEDCGWP--YQDFAYECKINLLTGRTHQIRAQFAACRAPLVGDSMYMPAAIG 411

Query: 1074 EGESPGLNPFGKNKKDCSNVEE-------WIAHHGKEPIAAIGLQACRISWDDGDHAYEA 1232
            +  +PGLNPFGK K+D S+  E       WIA HGKEP  AIGLQAC+ISWDD DH YE+
Sbjct: 412  DMSNPGLNPFGKYKRDFSSESEKETAVVNWIAQHGKEPGVAIGLQACQISWDDDDHFYES 471

Query: 1233 GSPWWR 1250
            GSPWWR
Sbjct: 472  GSPWWR 477


>ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Fragaria
            vesca subsp. vesca]
          Length = 477

 Score =  615 bits (1587), Expect = e-173
 Identities = 291/421 (69%), Positives = 341/421 (80%), Gaps = 9/421 (2%)
 Frame = +3

Query: 15   SRATAPADFSTNISVPTCNNSYP--PYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIVKA 188
            ++  A       ++ PT  +S    PY RLLPCPSQNGPPRVEHLVV EG  VL+YI K 
Sbjct: 57   NKRVACESLKEEVTYPTAASSVYGYPYTRLLPCPSQNGPPRVEHLVVSEGGPVLEYICKK 116

Query: 189  LNLPPLFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTVRE 368
            L+LP  FVADLIHFGAV+YALVCP PP TATPEQ++ +K+ T PS+L+KR SIKGKTVRE
Sbjct: 117  LDLPAQFVADLIHFGAVYYALVCPKPPPTATPEQMRVYKEVTAPSVLKKRDSIKGKTVRE 176

Query: 369  AQKTFRITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVG 548
            AQKTFRIT  D+++E GTYLRVHVHPKRFPRCY+IDWKSR+IAVTE +VVLDKPAGT+VG
Sbjct: 177  AQKTFRITHADQYVEDGTYLRVHVHPKRFPRCYDIDWKSRVIAVTEDFVVLDKPAGTTVG 236

Query: 549  GTTDNIEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXXXX 728
            GTTDNIEE+CATF +RALGL  PLMTTHQIDNCTEGCVVLARTK+YCSVFH KIR+    
Sbjct: 237  GTTDNIEESCATFTSRALGLSTPLMTTHQIDNCTEGCVVLARTKDYCSVFHGKIREKKVK 296

Query: 729  XXXXXXXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDIIEE 908
                     PV +G ITHYMRP+N+APRL+SED I  W LCQLEV+EC+KVPWP+ +IEE
Sbjct: 297  KLYLALAAAPVPLGTITHYMRPINVAPRLISEDSIERWSLCQLEVMECKKVPWPSSVIEE 356

Query: 909  KYRIEDCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGESP 1088
            +Y +EDCGWP+  KD+AYEC +NLLTG+THQIRAQLAA G PLVGD+MYMPAA+AE E+P
Sbjct: 357  EYGVEDCGWPS--KDYAYECKINLLTGKTHQIRAQLAACGTPLVGDSMYMPAAIAEMENP 414

Query: 1089 GLNPFGKNKKDCSN-------VEEWIAHHGKEPIAAIGLQACRISWDDGDHAYEAGSPWW 1247
             LNPFGK+KK  +        V EW+A HGKEPI AIGLQAC+ISWDDG+H++EA +PWW
Sbjct: 415  ELNPFGKHKKHYAGENDEEIAVTEWMARHGKEPIVAIGLQACQISWDDGEHSFEARAPWW 474

Query: 1248 R 1250
            R
Sbjct: 475  R 475


>ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Solanum tuberosum] gi|565362724|ref|XP_006348095.1|
            PREDICTED: RNA pseudouridine synthase 6,
            chloroplastic-like isoform X2 [Solanum tuberosum]
          Length = 483

 Score =  615 bits (1586), Expect = e-173
 Identities = 296/423 (69%), Positives = 341/423 (80%), Gaps = 7/423 (1%)
 Frame = +3

Query: 3    RNLSSRATAPADFSTNISVPTCNNSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIV 182
            R+ S ++TA +D S+  S    +N +  Y RL+PCP QN PPRVEHLVV +   VL+YI 
Sbjct: 64   RSFSCQSTALSDISST-SHTVSSNGHLRYGRLMPCPLQNSPPRVEHLVVTKEGPVLEYIC 122

Query: 183  KALNLPPLFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTV 362
            KAL+LPPL+V DLI FGAV+YALVCP PP TA+PEQIK +++ TDPS+LR+R+SIKGKTV
Sbjct: 123  KALDLPPLYVEDLIQFGAVYYALVCPKPPPTASPEQIKVYEEVTDPSILRQRTSIKGKTV 182

Query: 363  REAQKTFRITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTS 542
            REAQKTF+ITR DE +EAGTYLRVHVHPKRFPRCY+IDWKSRIIAVT+ YVVLDKPAGTS
Sbjct: 183  REAQKTFKITRADEIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTS 242

Query: 543  VGGTTDNIEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXX 722
            VGGTTDNIEE+CATFATRALG  APL+TTHQIDNCTEGCVVLAR+KEYCSVFH KIR+  
Sbjct: 243  VGGTTDNIEESCATFATRALGFSAPLLTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKK 302

Query: 723  XXXXXXXXXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDII 902
                       PV +GI+THYMRP+N+APRLVSEDF+ GW LCQLEVLEC+KVPWP+  I
Sbjct: 303  VKKLYLALAAAPVPIGILTHYMRPINMAPRLVSEDFVKGWLLCQLEVLECKKVPWPSSEI 362

Query: 903  EEKYRIEDCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGE 1082
            +  Y +EDCGW    KDFAYEC +NLLTGRTHQIRAQLAA  AP+VGD+MYMPAA+AE  
Sbjct: 363  QRTYNLEDCGWAL--KDFAYECQINLLTGRTHQIRAQLAACSAPVVGDSMYMPAAIAEIV 420

Query: 1083 SPGLNPFGKNKKDCSN-------VEEWIAHHGKEPIAAIGLQACRISWDDGDHAYEAGSP 1241
             PG NPFGKNKK  SN       ++EWIA HGKEP  A+GLQAC+ISWDDG H Y A  P
Sbjct: 421  CPGSNPFGKNKKLYSNENDKSLAIDEWIAQHGKEPSVAVGLQACQISWDDGQHCYGARLP 480

Query: 1242 WWR 1250
            WWR
Sbjct: 481  WWR 483


>ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
            chloroplastic-like [Cucumis sativus]
          Length = 475

 Score =  613 bits (1581), Expect = e-173
 Identities = 303/428 (70%), Positives = 341/428 (79%), Gaps = 13/428 (3%)
 Frame = +3

Query: 6    NLSSRATA-PADFS-TNISVPTCNNS----YPPYERLLPCPSQNGPPRVEHLVVIEGCTV 167
            +L S+++A P   S T+++V T  NS    YP Y RLLPCPS + PPRVEH+VV+E   V
Sbjct: 46   SLGSKSSAFPCKSSITDVTVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPV 105

Query: 168  LDYIVKALNLPPLFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSI 347
            ++YI K+LNLPPL+VADLIHFGAV+YALVCP PP TATPEQI+ FK  T+PS L+ R SI
Sbjct: 106  MEYICKSLNLPPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKNXTEPSFLKGRKSI 165

Query: 348  KGKTVREAQKTFRITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDK 527
            KGKTVREAQKTFRIT  DEF+E GTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDK
Sbjct: 166  KGKTVREAQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDK 225

Query: 528  PAGTSVGGTTDNIEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAK 707
            PAGTSVGGTTDNIEE+CATFATRALGL +PL TTHQIDNCTEGCV+ ARTKEYCS+FH K
Sbjct: 226  PAGTSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGK 285

Query: 708  IRDXXXXXXXXXXXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPW 887
            IR+             PV +GIITHYMRP+NIAPRLVS+D I GW +CQLEVLECR+V W
Sbjct: 286  IREKKVMKLYLALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSW 345

Query: 888  PNDIIEEKYRIEDCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAA 1067
            P+   E KYR+EDCGWP+K K  AYEC +NLLTGRTHQIRAQLA  GAPLVGD+MYMPA 
Sbjct: 346  PDADTEAKYRVEDCGWPSKKK--AYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAV 403

Query: 1068 VAEGESPGLNPFGKNKKDCSN-------VEEWIAHHGKEPIAAIGLQACRISWDDGDHAY 1226
            VAE  SPGLNPFGK KK+ +N       V EW A HGKEP  AIGLQA  ISWD  +H Y
Sbjct: 404  VAEMGSPGLNPFGKCKKEYTNEEDKETSVAEWSALHGKEPAVAIGLQAYEISWDSREHIY 463

Query: 1227 EAGSPWWR 1250
             AG+PWWR
Sbjct: 464  NAGTPWWR 471


>ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Glycine max]
          Length = 478

 Score =  612 bits (1578), Expect = e-172
 Identities = 292/426 (68%), Positives = 340/426 (79%), Gaps = 11/426 (2%)
 Frame = +3

Query: 6    NLSSRATAPADFSTN----ISVPTCNNSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLD 173
            N ++     A+F T     ++  + ++S+  Y+RLLPCPS   PPR+EHLVV EG  VL+
Sbjct: 54   NSNTALAGEAEFLTTDAGILNATSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLE 113

Query: 174  YIVKALNLPPLFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKG 353
            +I KAL+LPPL+V+DLI FGAV+YALVCP PP  AT EQI+ FK+ T+PS+LRKR+SIKG
Sbjct: 114  HICKALDLPPLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKG 173

Query: 354  KTVREAQKTFRITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPA 533
            KTVREAQKTFR+T  D+F+E GTYLRVHVHPKR PRCYEIDW+SRII V ESYVVLDKPA
Sbjct: 174  KTVREAQKTFRVTHVDQFVEPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPA 233

Query: 534  GTSVGGTTDNIEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIR 713
            GTSVGGTTDNIEE+CATFATRALG+  PLMTTHQIDNCTEGCVVLARTKEYCSVFH KIR
Sbjct: 234  GTSVGGTTDNIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIR 293

Query: 714  DXXXXXXXXXXXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPN 893
            +             P+  GIITHYMRP+++APRL+SEDFI GWHLCQLEVLECRKVPWP 
Sbjct: 294  EKKVKKFYLALAAFPLPTGIITHYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPWPA 353

Query: 894  DIIEEKYRIEDCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVA 1073
              I++KY IEDCGWP+  +D+AYEC +NLLTG+THQIRAQ AA  APL+GD+MYMPAA+A
Sbjct: 354  TAIQDKYCIEDCGWPS--QDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIA 411

Query: 1074 EGESPGLNPFGKNKKDCSNVEE-------WIAHHGKEPIAAIGLQACRISWDDGDHAYEA 1232
               +PGLNPFGK KKD S+  E       WIA HGKEP  AIGLQAC+ISWDD +H YEA
Sbjct: 412  NMSNPGLNPFGKYKKDFSSESEKETAVVNWIAQHGKEPSVAIGLQACQISWDDDEHFYEA 471

Query: 1233 GSPWWR 1250
             SPWWR
Sbjct: 472  SSPWWR 477


>ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Solanum
            lycopersicum]
          Length = 448

 Score =  608 bits (1567), Expect = e-171
 Identities = 291/423 (68%), Positives = 339/423 (80%), Gaps = 7/423 (1%)
 Frame = +3

Query: 3    RNLSSRATAPADFSTNISVPTCNNSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIV 182
            ++   ++TA +D ++  S    +N +  Y RL+PCP QN PPRVEHLVV +   V++YI 
Sbjct: 29   KSFCCQSTALSDINST-SHTVSSNGHLRYGRLMPCPLQNSPPRVEHLVVTKEGPVVEYIC 87

Query: 183  KALNLPPLFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTV 362
            KAL+LPPL+V DLI FGAV+YALVCP PP TA+PEQIK +++ TDPS+LRKR+SIKGKTV
Sbjct: 88   KALDLPPLYVEDLIQFGAVYYALVCPKPPPTASPEQIKVYEEVTDPSVLRKRTSIKGKTV 147

Query: 363  REAQKTFRITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTS 542
            REAQKTF+ITR DE +EAGTYLRVHVHPKRFPRCY+IDWKSRIIAVT+ YVVLDKPAGTS
Sbjct: 148  REAQKTFKITRADEIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTS 207

Query: 543  VGGTTDNIEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXX 722
            VGGTTDNIEE+CATFATRALG  APL+TTHQIDNCTEGCVVLAR+KEYCSVFH KIR+  
Sbjct: 208  VGGTTDNIEESCATFATRALGFSAPLLTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKK 267

Query: 723  XXXXXXXXXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDII 902
                       PV +GI+THYMRP+N+APRLVS DF+ GW LCQLEVLEC+KVPWP+  I
Sbjct: 268  VRKLYLALAAAPVPIGILTHYMRPINMAPRLVSRDFVKGWLLCQLEVLECQKVPWPSSEI 327

Query: 903  EEKYRIEDCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGE 1082
            +  Y +EDCGW    KD+AYEC +NLLTGRTHQIRAQLAA  AP+VGD+MYMPAA+AE  
Sbjct: 328  QRTYNLEDCGWAL--KDYAYECQINLLTGRTHQIRAQLAACSAPVVGDSMYMPAAIAEIV 385

Query: 1083 SPGLNPFGKNKKDCSN-------VEEWIAHHGKEPIAAIGLQACRISWDDGDHAYEAGSP 1241
             PG NPFGKNKK  SN       ++EWIA HGKEP  A+GLQAC+ISWDDG H Y A  P
Sbjct: 386  CPGSNPFGKNKKLYSNENDKSLAIDEWIAQHGKEPSVAVGLQACQISWDDGQHCYGARMP 445

Query: 1242 WWR 1250
            WWR
Sbjct: 446  WWR 448


>gb|EPS61068.1| hypothetical protein M569_13732 [Genlisea aurea]
          Length = 461

 Score =  607 bits (1566), Expect = e-171
 Identities = 296/427 (69%), Positives = 339/427 (79%), Gaps = 11/427 (2%)
 Frame = +3

Query: 3    RNLSSRATAPADFSTNISVPTCNNSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIV 182
            R L  R+TA +     I   T +NSYPPY RLLPCP +N  PRVEHLVV EG  VL+YI 
Sbjct: 38   RCLCCRSTASSAIVNKICSST-SNSYPPYGRLLPCPIENTLPRVEHLVVSEGGPVLEYIS 96

Query: 183  KALNLPPLFVADLIHFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTV 362
             AL +PPLFVADLIHFGAVFYALVCP PP+TA PE+++ ++K+TD S+L KR SIKGKT 
Sbjct: 97   NALEIPPLFVADLIHFGAVFYALVCPDPPSTAAPEEMEIYRKYTDRSVLSKRPSIKGKTR 156

Query: 363  REAQKTFRITRTDEFLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTS 542
            REAQKTFRITRTDE +E GTYLRVHVHPKRFPRCYEIDWKSRIIAVT +YVVLDKPAGTS
Sbjct: 157  REAQKTFRITRTDELVETGTYLRVHVHPKRFPRCYEIDWKSRIIAVTANYVVLDKPAGTS 216

Query: 543  VGGTTDNIEETCATFATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXX 722
            VGGTTDNIEE CATFA+RALGL  PL TTHQIDNCTEGCVV A+TKEYCSVFH KIR+  
Sbjct: 217  VGGTTDNIEECCATFASRALGLSEPLRTTHQIDNCTEGCVVFAKTKEYCSVFHGKIREKT 276

Query: 723  XXXXXXXXXXXPVSVGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDII 902
                       PV +GIITHYMRPVNIAPRL+S DFISGWH+C+LEVLECRKV WP++I 
Sbjct: 277  VKKLYLALTSAPVPIGIITHYMRPVNIAPRLISSDFISGWHMCRLEVLECRKVRWPSEIA 336

Query: 903  EEKYRIEDCGWPTKHKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGE 1082
            + K  ++DCGWP  +++ AYEC +NLLTG+THQIRAQLAARGAPLVGD+MYMPAA++E +
Sbjct: 337  QRKQNVDDCGWP--NRESAYECKINLLTGKTHQIRAQLAARGAPLVGDSMYMPAAMSEMQ 394

Query: 1083 SPGLNPFGKNKKDCS-----NVEEWIAHHGKEPIAAIGLQACRISWDDGD------HAYE 1229
             PGLNPFG NK++        +E WI  HGKEP  AIGLQA  +SWDD +      H+YE
Sbjct: 395  FPGLNPFGSNKREYEEDEVWGMEGWIKAHGKEPSGAIGLQARHVSWDDDEQQQRRRHSYE 454

Query: 1230 AGSPWWR 1250
            AGSPWWR
Sbjct: 455  AGSPWWR 461


>ref|XP_004158017.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
            sativus]
          Length = 475

 Score =  595 bits (1535), Expect = e-167
 Identities = 287/409 (70%), Positives = 327/409 (79%), Gaps = 7/409 (1%)
 Frame = +3

Query: 45   TNISVPTCNNSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIVKALNLPPLFVADLI 224
            T  +  +  N YP Y RLLPC S N PPRVEHLVV+EG  V++YI K+L+LPP++VADLI
Sbjct: 65   TQTATNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLI 124

Query: 225  HFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTVREAQKTFRITRTDE 404
            HFGAV+YALVCP PP TA+ E+I+ FKKFT PS L  R SIKGKT+REAQKTFRIT  DE
Sbjct: 125  HFGAVYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDE 184

Query: 405  FLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEETCAT 584
            F+E GTYLRV+VHPKRFPRCYE+DWKSRIIAVT+SYVVLDKPAGTSVGGTT+NIEETC T
Sbjct: 185  FVEVGTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVT 244

Query: 585  FATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXXXXXXXXXXXXXPVS 764
            FATRALGL +PL TTHQIDNCTEGCV+LARTKEYCS+FH KIR+             P+ 
Sbjct: 245  FATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVTKLYLALVAVPLP 304

Query: 765  VGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDIIEEKYRIEDCGWPTK 944
             GI+THYMRP N+APRLVS D I GW+LCQLEVLECR+V WP+  IE KY IEDCGWP+K
Sbjct: 305  KGIMTHYMRPNNLAPRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDCGWPSK 364

Query: 945  HKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGESPGLNPFGKNKKDC 1124
             K  A+EC +NLLTGRTHQIR QLA  GAPLVGD++YMPAAVAE  +PGLNPFGK KK+ 
Sbjct: 365  KK--AFECKINLLTGRTHQIRVQLADYGAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEY 422

Query: 1125 SN-------VEEWIAHHGKEPIAAIGLQACRISWDDGDHAYEAGSPWWR 1250
            ++       V EWIA HGKEP  AIGLQA  ISWD G+H Y AG+PWWR
Sbjct: 423  TSEEDKENAVAEWIALHGKEPAVAIGLQAYEISWDSGEHIYNAGTPWWR 471


>ref|XP_004145102.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
            sativus]
          Length = 475

 Score =  594 bits (1532), Expect = e-167
 Identities = 287/409 (70%), Positives = 327/409 (79%), Gaps = 7/409 (1%)
 Frame = +3

Query: 45   TNISVPTCNNSYPPYERLLPCPSQNGPPRVEHLVVIEGCTVLDYIVKALNLPPLFVADLI 224
            T  +  +  N YP Y RLLPC S N PPRVEHLVV+EG  V++YI K+L+LPP++VADLI
Sbjct: 65   TQTATNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLI 124

Query: 225  HFGAVFYALVCPSPPATATPEQIKAFKKFTDPSLLRKRSSIKGKTVREAQKTFRITRTDE 404
            HFGAV+YALVCP PP TA+ E+I+ FKKFT PS L  R SIKGKT+REAQKTFRIT  DE
Sbjct: 125  HFGAVYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDE 184

Query: 405  FLEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEETCAT 584
            F+E GTYLRV+VHPKRFPRCYE+DWKSRIIAVT+SYVVLDKPAGTSVGGTT+NIEETC T
Sbjct: 185  FVEVGTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVT 244

Query: 585  FATRALGLDAPLMTTHQIDNCTEGCVVLARTKEYCSVFHAKIRDXXXXXXXXXXXXXPVS 764
            FATRALGL +PL TTHQIDNCTEGCV+LARTKEYCS+FH KIR+             P+ 
Sbjct: 245  FATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVTKLYLALVAVPLP 304

Query: 765  VGIITHYMRPVNIAPRLVSEDFISGWHLCQLEVLECRKVPWPNDIIEEKYRIEDCGWPTK 944
             GI+THYMRP N+APRLVS D I GW+LCQLEVLECR+V WP+  IE KY IEDCGWP+K
Sbjct: 305  KGIMTHYMRPNNLAPRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDCGWPSK 364

Query: 945  HKDFAYECTLNLLTGRTHQIRAQLAARGAPLVGDTMYMPAAVAEGESPGLNPFGKNKKDC 1124
             K  A+EC +NLLTGRTHQIRAQLA  GAPLVGD+MYMPA VAE  +PGLNPFGK KK+ 
Sbjct: 365  KK--AFECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMANPGLNPFGKCKKEY 422

Query: 1125 SN-------VEEWIAHHGKEPIAAIGLQACRISWDDGDHAYEAGSPWWR 1250
            ++       V EWIA HGKEP  AIGLQA  ISWD  +H+Y AG+PWWR
Sbjct: 423  TSEEDKENAVAEWIALHGKEPAVAIGLQAYEISWDSREHSYNAGTPWWR 471