BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00003050
         (964 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU44877.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus...   200   6e-49
gb|EYU44876.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus...   200   6e-49
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   185   2e-44
ref|XP_007029767.1| Sigma factor A isoform 2 [Theobroma cacao] g...   185   3e-44
ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao] g...   185   3e-44
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              184   5e-44
ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prun...   183   8e-44
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   177   7e-42
ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Popu...   176   2e-41
ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Popu...   176   2e-41
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   176   2e-41
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   175   2e-41
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   175   3e-41
ref|XP_004499501.1| PREDICTED: RNA polymerase sigma factor sigA-...   174   6e-41
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      173   8e-41
ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-...   173   1e-40
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-...   173   1e-40
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   172   1e-40
ref|XP_004307835.1| PREDICTED: RNA polymerase sigma factor sigA-...   172   2e-40
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   170   7e-40

>gb|EYU44877.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus guttatus]
           gi|604346415|gb|EYU44878.1| hypothetical protein
           MIMGU_mgv1a004509mg [Mimulus guttatus]
          Length = 520

 Score =  200 bits (509), Expect = 6e-49
 Identities = 138/309 (44%), Positives = 167/309 (54%), Gaps = 40/309 (12%)
 Frame = +2

Query: 158 LLLGATSYYSDLSAEKLVCS-------AGDLPXXXXXXXXXXXXXRRPHSVKALKDPHST 316
           LLL ++ +YSD+S + + CS       A                 R PHS++ALK+    
Sbjct: 18  LLLSSSLFYSDVSDKFVACSTDSHCPIASSKKPINAKKSSNFFSNRHPHSIRALKEHVDA 77

Query: 317 CS--------LIHDHP----------EYLVDAVLLLQKSMLEKQWNLAPE-----XXXXX 427
            S        LIH             EYLVDAVLLLQKS+LEKQWNL+ E          
Sbjct: 78  ASDPCTLEPWLIHGSTLLGEEDETSDEYLVDAVLLLQKSLLEKQWNLSAESSTKQTVTSP 137

Query: 428 XXXXXXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXXGGVD------DEMMIPQFLLLPP 589
                         +I +VTCSG SA            G +      D +      ++ P
Sbjct: 138 RERTPAPARARARKKITQVTCSGTSARSRRMDSRKKAVGRNISNSHHDNVRKQWRSIISP 197

Query: 590 QKXXXXXXSYYV----SEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEQLA 757
           +         YV    SE LLTHS+VV+LS  IKAGL LE+RRSRLK+RLGCEPSDEQLA
Sbjct: 198 ELLQNSSRRGYVKGVISEDLLTHSQVVQLSQIIKAGLLLEDRRSRLKERLGCEPSDEQLA 257

Query: 758 SSLRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXXXXXXXX 937
           +SL++SRA LQS++IECSLAREKLAMSNIRLVMSIAQRYD+MGAEM D            
Sbjct: 258 TSLQISRADLQSKLIECSLAREKLAMSNIRLVMSIAQRYDHMGAEMADLIQGGLIGLLRG 317

Query: 938 XEKFDSSKG 964
            EK+DSSKG
Sbjct: 318 IEKYDSSKG 326


>gb|EYU44876.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus guttatus]
          Length = 523

 Score =  200 bits (509), Expect = 6e-49
 Identities = 138/309 (44%), Positives = 167/309 (54%), Gaps = 40/309 (12%)
 Frame = +2

Query: 158 LLLGATSYYSDLSAEKLVCS-------AGDLPXXXXXXXXXXXXXRRPHSVKALKDPHST 316
           LLL ++ +YSD+S + + CS       A                 R PHS++ALK+    
Sbjct: 18  LLLSSSLFYSDVSDKFVACSTDSHCPIASSKKPINAKKSSNFFSNRHPHSIRALKEHVDA 77

Query: 317 CS--------LIHDHP----------EYLVDAVLLLQKSMLEKQWNLAPE-----XXXXX 427
            S        LIH             EYLVDAVLLLQKS+LEKQWNL+ E          
Sbjct: 78  ASDPCTLEPWLIHGSTLLGEEDETSDEYLVDAVLLLQKSLLEKQWNLSAESSTKQTVTSP 137

Query: 428 XXXXXXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXXGGVD------DEMMIPQFLLLPP 589
                         +I +VTCSG SA            G +      D +      ++ P
Sbjct: 138 RERTPAPARARARKKITQVTCSGTSARSRRMDSRKKAVGRNISNSHHDNVRKQWRSIISP 197

Query: 590 QKXXXXXXSYYV----SEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEQLA 757
           +         YV    SE LLTHS+VV+LS  IKAGL LE+RRSRLK+RLGCEPSDEQLA
Sbjct: 198 ELLQNSSRRGYVKGVISEDLLTHSQVVQLSQIIKAGLLLEDRRSRLKERLGCEPSDEQLA 257

Query: 758 SSLRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXXXXXXXX 937
           +SL++SRA LQS++IECSLAREKLAMSNIRLVMSIAQRYD+MGAEM D            
Sbjct: 258 TSLQISRADLQSKLIECSLAREKLAMSNIRLVMSIAQRYDHMGAEMADLIQGGLIGLLRG 317

Query: 938 XEKFDSSKG 964
            EK+DSSKG
Sbjct: 318 IEKYDSSKG 326


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
           vinifera]
          Length = 497

 Score =  185 bits (470), Expect = 2e-44
 Identities = 131/295 (44%), Positives = 161/295 (54%), Gaps = 27/295 (9%)
 Frame = +2

Query: 161 LLGATSYYSDLSAEKLVCSAGDL--PXXXXXXXXXXXXXRRP-----------HSVKALK 301
           LL ++ +YSD+ AEKL     D+  P             ++P            S+KALK
Sbjct: 16  LLASSHHYSDV-AEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYTPSSNRSIQSMKALK 74

Query: 302 --------------DPHSTCSLIHDHPEYLVDAVLLLQKSMLEKQWNLAPEXXXXXXXXX 439
                         D  S+ S + D  EYLV+A LLLQKSMLEKQWNL+ E         
Sbjct: 75  EHVESASAPSTADPDLSSSSSEVEDE-EYLVEAFLLLQKSMLEKQWNLSFEEEEEEEEED 133

Query: 440 XXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXXGGVDDEMMIPQFLLLPPQKXXXXXXSY 619
                     E   VTCSG SA                +  +   L +  +         
Sbjct: 134 MGKKARQKRRE---VTCSGTSARQRRISGRKRVMNEKSKSRVRAALGV--ENRLKGYVKG 188

Query: 620 YVSEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEQLASSLRMSRATLQSRM 799
            VSE+LLTH++VV LS+KIKAGL LE+ +SRLK+R+G EP+DEQ+A+SLRMSRA LQS++
Sbjct: 189 VVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKL 248

Query: 800 IECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKG 964
           IECSLAREKLAMSN+RLVMSIAQRYDNMGAEM D             EKFDSSKG
Sbjct: 249 IECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 303


>ref|XP_007029767.1| Sigma factor A isoform 2 [Theobroma cacao]
           gi|508718372|gb|EOY10269.1| Sigma factor A isoform 2
           [Theobroma cacao]
          Length = 450

 Score =  185 bits (469), Expect = 3e-44
 Identities = 119/254 (46%), Positives = 147/254 (57%), Gaps = 23/254 (9%)
 Frame = +2

Query: 272 RRPHSVKALKDPHSTCSLIHDHP----------------EYLVDAVLLLQKSMLEKQWNL 403
           RR  S+KALK+   + S++                    +Y V+A+LLLQKSMLEKQW L
Sbjct: 67  RRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSMLEKQWTL 126

Query: 404 APEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXXGGVDDEMMIPQFL-- 577
           + E                       VTCSG+SA              +  ++ P     
Sbjct: 127 SFERTVFTESPSRKIHKKIP------VTCSGVSARQRRFNTKRKILIQNKSIIQPNAKQL 180

Query: 578 --LLPPQKXXXXXXSYY---VSEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEPS 742
             L+ P+        Y    VS++LL+H+EVVRLS KIKAGL+LEE R RLK+RLGCEPS
Sbjct: 181 RSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKERLGCEPS 240

Query: 743 DEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXXX 922
           DEQLA+SL++SRA L+S++IECSLAREKLAMSN+RLVMSIAQRYDNMGAEM D       
Sbjct: 241 DEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGLI 300

Query: 923 XXXXXXEKFDSSKG 964
                 EKFDSSKG
Sbjct: 301 GLLRGIEKFDSSKG 314


>ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao]
           gi|508718371|gb|EOY10268.1| Sigma factor A isoform 1
           [Theobroma cacao]
          Length = 508

 Score =  185 bits (469), Expect = 3e-44
 Identities = 119/254 (46%), Positives = 147/254 (57%), Gaps = 23/254 (9%)
 Frame = +2

Query: 272 RRPHSVKALKDPHSTCSLIHDHP----------------EYLVDAVLLLQKSMLEKQWNL 403
           RR  S+KALK+   + S++                    +Y V+A+LLLQKSMLEKQW L
Sbjct: 67  RRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSMLEKQWTL 126

Query: 404 APEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXXGGVDDEMMIPQFL-- 577
           + E                       VTCSG+SA              +  ++ P     
Sbjct: 127 SFERTVFTESPSRKIHKKIP------VTCSGVSARQRRFNTKRKILIQNKSIIQPNAKQL 180

Query: 578 --LLPPQKXXXXXXSYY---VSEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEPS 742
             L+ P+        Y    VS++LL+H+EVVRLS KIKAGL+LEE R RLK+RLGCEPS
Sbjct: 181 RSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKERLGCEPS 240

Query: 743 DEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXXX 922
           DEQLA+SL++SRA L+S++IECSLAREKLAMSN+RLVMSIAQRYDNMGAEM D       
Sbjct: 241 DEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGLI 300

Query: 923 XXXXXXEKFDSSKG 964
                 EKFDSSKG
Sbjct: 301 GLLRGIEKFDSSKG 314


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  184 bits (467), Expect = 5e-44
 Identities = 130/295 (44%), Positives = 161/295 (54%), Gaps = 27/295 (9%)
 Frame = +2

Query: 161 LLGATSYYSDLSAEKLVCSAGDL--PXXXXXXXXXXXXXRRP-----------HSVKALK 301
           LL ++ +YSD+ AEKL     D+  P             ++P            S+KALK
Sbjct: 87  LLASSHHYSDV-AEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYTPSSNRSIQSMKALK 145

Query: 302 --------------DPHSTCSLIHDHPEYLVDAVLLLQKSMLEKQWNLAPEXXXXXXXXX 439
                         D  S+ S + D  EYLV+A LLLQKSMLEKQWNL+           
Sbjct: 146 EHVESASAPSTADPDLSSSSSEVEDE-EYLVEAFLLLQKSMLEKQWNLS----------- 193

Query: 440 XXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXXGGVDDEMMIPQFLLLPPQKXXXXXXSY 619
                     +  EVTCSG SA                +  +   L +  +         
Sbjct: 194 -----FKARQKRREVTCSGTSARQRRISGRKRVMNEKSKSRVRAALGV--ENRLKGYVKG 246

Query: 620 YVSEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEQLASSLRMSRATLQSRM 799
            VSE+LLTH++VV LS+KIKAGL LE+ +SRLK+R+G EP+DEQ+A+SLRMSRA LQS++
Sbjct: 247 VVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKL 306

Query: 800 IECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKG 964
           IECSLAREKLAMSN+RLVMSIAQRYDNMGAEM D             EKFDSSKG
Sbjct: 307 IECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 361


>ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
           gi|462415485|gb|EMJ20222.1| hypothetical protein
           PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  183 bits (465), Expect = 8e-44
 Identities = 112/217 (51%), Positives = 132/217 (60%), Gaps = 9/217 (4%)
 Frame = +2

Query: 341 EYLVDAVLLLQKSMLEKQWNLAPEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXX 520
           EY V+A+LLLQKSMLEKQWNL+ E                       VTCSG+SA     
Sbjct: 108 EYSVEALLLLQKSMLEKQWNLSFEKKVLRDSTSKTTDKKIP------VTCSGVSARQRRM 161

Query: 521 XXXXXXGGVDDEMMI------PQFLLLPPQKXXXXXXSYY---VSEQLLTHSEVVRLSHK 673
                        ++      P   ++ P+        Y    +SE LLTH+EVVRLS K
Sbjct: 162 TSTKRKTFNKSTCVMHPSTNKPLRAIVSPELLQNHVKGYVKGVLSEDLLTHTEVVRLSKK 221

Query: 674 IKAGLALEERRSRLKQRLGCEPSDEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRLV 853
           IK GL++EE +SRLK+RLGCEPSDEQLA+SLR+SRA LQS++IEC LAREKLAMSN+RLV
Sbjct: 222 IKVGLSVEEHKSRLKERLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLV 281

Query: 854 MSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKG 964
           MSIAQRYDNMGAEM D             EKFDSSKG
Sbjct: 282 MSIAQRYDNMGAEMADLIQGGLIGLLRGIEKFDSSKG 318


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
           gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
           polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  177 bits (448), Expect = 7e-42
 Identities = 113/229 (49%), Positives = 136/229 (59%), Gaps = 10/229 (4%)
 Frame = +2

Query: 308 HSTCSLIHDHPE--YLVDAVLLLQKSMLEKQWNLAPEXXXXXXXXXXXXXXXXXXSEIDE 481
           H+T S   +  E  Y V+A+LLLQKSMLEKQW+L+ E                       
Sbjct: 92  HNTTSWEDEETELKYTVEALLLLQKSMLEKQWSLSFEQTVSTDTPKEKTLKKVP------ 145

Query: 482 VTCSGISAXXXXXXXXXXXGGVDDEMMIPQFL-----LLPPQKXXXXXXSYY---VSEQL 637
           VTCSG+SA                 M  P+        + P+        Y    +SE+L
Sbjct: 146 VTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEEL 205

Query: 638 LTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEQLASSLRMSRATLQSRMIECSLA 817
           L+H+EVVRLS KIK GL LEER++RLKQRLGCEPS++QLA SL++SRA L+SRM+E SLA
Sbjct: 206 LSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEPSEDQLAISLKISRAELRSRMMESSLA 265

Query: 818 REKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKG 964
           REKLAMSN+RLVMSIAQRYDNMGAEM D             EKFDSSKG
Sbjct: 266 REKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 314


>ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Populus trichocarpa]
           gi|550325184|gb|EEE95160.2| hypothetical protein
           POPTR_0013s07290g [Populus trichocarpa]
          Length = 499

 Score =  176 bits (445), Expect = 2e-41
 Identities = 119/248 (47%), Positives = 141/248 (56%), Gaps = 17/248 (6%)
 Frame = +2

Query: 272 RRPHSVKALKDPHSTCSL----------IHDHPE------YLVDAVLLLQKSMLEKQWNL 403
           R PHS KALK+   T S           + D  E      Y V+A++LLQKSMLEKQWNL
Sbjct: 67  RNPHSNKALKELIDTASASSTVATWFKTLDDFEEESSVLDYSVEALILLQKSMLEKQWNL 126

Query: 404 APEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXXGGVDDEMM-IPQFLL 580
           + E                       VTCSG+SA                 M  I   LL
Sbjct: 127 SFESINSSDSKIKKSNKKIP------VTCSGVSARQRRLNNKRKNQNQSKFMSDISPDLL 180

Query: 581 LPPQKXXXXXXSYYVSEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEQLAS 760
           L   K         VS+++L H+EVVRLS  I+AGL+LE+ +S LK+RLGCEPSDEQLA 
Sbjct: 181 LNRLKGYVKGV---VSDEVLPHTEVVRLSRIIRAGLSLEDHKSSLKERLGCEPSDEQLAD 237

Query: 761 SLRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXXXXXXXXX 940
           SLR+SRA LQS++I+CSLAREKLAMSN+RLVMSIAQ+ DNMGAEM D             
Sbjct: 238 SLRISRADLQSQLIQCSLAREKLAMSNVRLVMSIAQKNDNMGAEMADLVQAGLIGLLRGI 297

Query: 941 EKFDSSKG 964
           EKFDSSKG
Sbjct: 298 EKFDSSKG 305


>ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Populus trichocarpa]
           gi|550316904|gb|ERP49007.1| hypothetical protein
           POPTR_0019s06020g [Populus trichocarpa]
          Length = 451

 Score =  176 bits (445), Expect = 2e-41
 Identities = 118/255 (46%), Positives = 142/255 (55%), Gaps = 24/255 (9%)
 Frame = +2

Query: 272 RRPHSVKALKDPHSTCSL----------IHDHPE------YLVDAVLLLQKSMLEKQWNL 403
           R  HS+KALK+   T S             D  E      Y V+A+LLLQKSMLEKQWNL
Sbjct: 67  RNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLEKQWNL 126

Query: 404 APEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXXGGVDDEMMIP---QF 574
           + E                       VTCSG+SA                 M      +F
Sbjct: 127 SFERTNSSDSTSKKNNKKIP------VTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 575 L--LLPPQKXXXXXXSYY---VSEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEP 739
           L  +  P         Y    VS+++L H+EVVRLS  I+AGL+ E+ +SRLK+RLGCEP
Sbjct: 181 LRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240

Query: 740 SDEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXX 919
           SDEQ+A SLR+SRA LQS++I+CSLAREKLAMSN+RLVMSIAQ+YDNMGAEM D      
Sbjct: 241 SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300

Query: 920 XXXXXXXEKFDSSKG 964
                  EKFDSSKG
Sbjct: 301 IGLLRGIEKFDSSKG 315


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
           gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
           1 family protein [Populus trichocarpa]
          Length = 509

 Score =  176 bits (445), Expect = 2e-41
 Identities = 118/255 (46%), Positives = 142/255 (55%), Gaps = 24/255 (9%)
 Frame = +2

Query: 272 RRPHSVKALKDPHSTCSL----------IHDHPE------YLVDAVLLLQKSMLEKQWNL 403
           R  HS+KALK+   T S             D  E      Y V+A+LLLQKSMLEKQWNL
Sbjct: 67  RNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLEKQWNL 126

Query: 404 APEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXXGGVDDEMMIP---QF 574
           + E                       VTCSG+SA                 M      +F
Sbjct: 127 SFERTNSSDSTSKKNNKKIP------VTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 575 L--LLPPQKXXXXXXSYY---VSEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEP 739
           L  +  P         Y    VS+++L H+EVVRLS  I+AGL+ E+ +SRLK+RLGCEP
Sbjct: 181 LRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240

Query: 740 SDEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXX 919
           SDEQ+A SLR+SRA LQS++I+CSLAREKLAMSN+RLVMSIAQ+YDNMGAEM D      
Sbjct: 241 SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300

Query: 920 XXXXXXXEKFDSSKG 964
                  EKFDSSKG
Sbjct: 301 IGLLRGIEKFDSSKG 315


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
          Length = 503

 Score =  175 bits (444), Expect = 2e-41
 Identities = 107/212 (50%), Positives = 130/212 (61%), Gaps = 5/212 (2%)
 Frame = +2

Query: 344 YLVDAVLLLQKSMLEKQWNLAPEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXXX 523
           Y V+A+LLLQKSMLEKQWNL+ E                       VTCSG+SA      
Sbjct: 106 YSVEALLLLQKSMLEKQWNLSFEREVLTENSSKGKKCRKVA-----VTCSGVSARQRRMN 160

Query: 524 XXXXX-----GGVDDEMMIPQFLLLPPQKXXXXXXSYYVSEQLLTHSEVVRLSHKIKAGL 688
                     G +  +  I   LL   Q          VSE+LL+H+EVV LS KIK GL
Sbjct: 161 TKRKTAIKTCGAMQLKSKISPELL---QHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGL 217

Query: 689 ALEERRSRLKQRLGCEPSDEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQ 868
           +LEE +SRLK++LGCEPSD+Q+A+SL++SR  L++RMIECSLAREKLAMSN+RLVMSIAQ
Sbjct: 218 SLEEHKSRLKEKLGCEPSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQ 277

Query: 869 RYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKG 964
           +YDN+GAEM D             EKFDSSKG
Sbjct: 278 KYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKG 309


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 508

 Score =  175 bits (443), Expect = 3e-41
 Identities = 118/255 (46%), Positives = 142/255 (55%), Gaps = 24/255 (9%)
 Frame = +2

Query: 272 RRPHSVKALKDPHSTCSL----------IHDHPE------YLVDAVLLLQKSMLEKQWNL 403
           R   S+KALK+   T S            +D  E      Y V+A+LLLQKSMLEKQWNL
Sbjct: 66  RNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLEKQWNL 125

Query: 404 APEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXXGG-----VDDEMMIP 568
           + E                       VTCSG+SA                  V   +   
Sbjct: 126 SFERTDSSDSPSRKSQKKIP------VTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQ 179

Query: 569 QFLLLPPQKXXXXXXSYY---VSEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEP 739
               + P+        Y    VSE+LL+H+EVVRLS  IKAGL+LE+ +SRLK+RLGC+P
Sbjct: 180 LKSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDP 239

Query: 740 SDEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXX 919
           SDEQ+A+SL++SRA LQS+ I CSLAREKLAMSN+RLVMSIAQRYDNMGAEM D      
Sbjct: 240 SDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 299

Query: 920 XXXXXXXEKFDSSKG 964
                  EKFDSSKG
Sbjct: 300 IGLLRGIEKFDSSKG 314


>ref|XP_004499501.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X3 [Cicer
           arietinum]
          Length = 513

 Score =  174 bits (440), Expect = 6e-41
 Identities = 102/209 (48%), Positives = 129/209 (61%), Gaps = 2/209 (0%)
 Frame = +2

Query: 344 YLVDAVLLLQKSMLEKQWNLAPEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXXX 523
           Y VDA+LL+QKSMLEKQW L+ E                       VTCSG+SA      
Sbjct: 116 YSVDALLLMQKSMLEKQWCLSFEREVVTENSMRVKNRRKVT-----VTCSGVSARQRRMN 170

Query: 524 XXXXXGGVDDEMMIPQFLLLPP--QKXXXXXXSYYVSEQLLTHSEVVRLSHKIKAGLALE 697
                       +  +  + P   Q          VSE+LL+H++VV+LS KIKAGL+L+
Sbjct: 171 SKRKISSKTGSAVQMRSAITPELLQNRLKGYVKGVVSEELLSHAQVVKLSQKIKAGLSLD 230

Query: 698 ERRSRLKQRLGCEPSDEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQRYD 877
           E +SRLK+RLGCEPSD+Q+A+SL++S+A L++++IECSLAREKL MSN+RLVMSIAQRYD
Sbjct: 231 EHKSRLKERLGCEPSDDQVATSLKISQAELRAKIIECSLAREKLTMSNVRLVMSIAQRYD 290

Query: 878 NMGAEMPDXXXXXXXXXXXXXEKFDSSKG 964
           NMGAEM D             EKFDSSKG
Sbjct: 291 NMGAEMADLVQGGLIGLLRGIEKFDSSKG 319


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  173 bits (439), Expect = 8e-41
 Identities = 126/306 (41%), Positives = 156/306 (50%), Gaps = 38/306 (12%)
 Frame = +2

Query: 161 LLGATSYYSDLSAEKLVCSAG-DLPXXXXXXXXXXXXX-------------RRPHSVKAL 298
           LL ++ YYSDL+ EKL C++   LP                          R+  S K+L
Sbjct: 16  LLSSSFYYSDLN-EKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSPSCVSSRKSQSAKSL 74

Query: 299 K-------DPHSTCSLIH---------DHPEYLVDAVLLLQKSMLEKQWNLAPEXXXXXX 430
           K       DP    S            D  +  V+ +LLLQKSMLEKQWNL+ E      
Sbjct: 75  KEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLEKQWNLSLEQTLTAS 134

Query: 431 XXXXXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXX-----GGVDDEMMIPQFLLLPPQK 595
                       S+   +TCSG SA                         P   ++ P+ 
Sbjct: 135 PQHEKK------SKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKPLRSIIGPEL 188

Query: 596 XXXXXXSYY---VSEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEQLASSL 766
                  Y    VSE+LLTH+EV++LS KI+ GL LEE++SRLK+RLGCEPSD+QLA SL
Sbjct: 189 LQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSDDQLAVSL 248

Query: 767 RMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEK 946
           +MSR  LQS +IECSLARE+LAMSN+RLVMSIAQRYDN+GAEM D             EK
Sbjct: 249 KMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIGLLRGIEK 308

Query: 947 FDSSKG 964
           FD SKG
Sbjct: 309 FDPSKG 314


>ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
           lycopersicum]
          Length = 509

 Score =  173 bits (438), Expect = 1e-40
 Identities = 128/307 (41%), Positives = 153/307 (49%), Gaps = 39/307 (12%)
 Frame = +2

Query: 161 LLGATSYYSDLSAEKLVCSAG-DLPXXXXXXXXXXXXX-------------RRPHSVKAL 298
           LL ++ YYSDL+ EKL CS+   LP                          R+  SVKAL
Sbjct: 16  LLSSSFYYSDLN-EKLSCSSDHSLPCHQVPTVKNVISAKKSSDYSPSCVSSRKLQSVKAL 74

Query: 299 K-------DPHSTCSLIH----------DHPEYLVDAVLLLQKSMLEKQWNLAPEXXXXX 427
           K       DP    S             D  +  V+ +LLLQKSMLEKQWNL+ E     
Sbjct: 75  KEHVDIASDPSDVQSWFERFEQLQNESDDEEDDSVEVLLLLQKSMLEKQWNLSAEETLTA 134

Query: 428 XXXXXXXXXXXXXSEIDEVTCSGISAXXXXXXXXXXX-----GGVDDEMMIPQFLLLPPQ 592
                             + CSG SA                         P   +L P 
Sbjct: 135 STQRKKNCKKM------HIACSGTSARRRRMDSRQRVLAQKSSATPISATKPLRSILGPD 188

Query: 593 KXXXXXXSYY---VSEQLLTHSEVVRLSHKIKAGLALEERRSRLKQRLGCEPSDEQLASS 763
                   Y    VSE+LLTH+EV++LS KIK GL +EE++SRLK+RLGCEPSD+QLA S
Sbjct: 189 LLQNRLKGYVKGIVSEELLTHTEVLQLSKKIKVGLHVEEQKSRLKERLGCEPSDDQLAVS 248

Query: 764 LRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMPDXXXXXXXXXXXXXE 943
           L+MSR  LQS +IECSLARE+L+MSN+RLVMSIAQRYDNMGAEM D             E
Sbjct: 249 LKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 308

Query: 944 KFDSSKG 964
           KFD SKG
Sbjct: 309 KFDPSKG 315


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1
           [Glycine max] gi|571478813|ref|XP_006587676.1|
           PREDICTED: RNA polymerase sigma factor sigA-like isoform
           X2 [Glycine max]
          Length = 503

 Score =  173 bits (438), Expect = 1e-40
 Identities = 106/212 (50%), Positives = 129/212 (60%), Gaps = 5/212 (2%)
 Frame = +2

Query: 344 YLVDAVLLLQKSMLEKQWNLAPEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXXX 523
           Y V+A+LLLQKSMLEKQWNL+ E                       VTCSG+SA      
Sbjct: 106 YSVEALLLLQKSMLEKQWNLSFEREVLTEHSSKGKKCKKVA-----VTCSGVSARQRRMN 160

Query: 524 XXXXX-----GGVDDEMMIPQFLLLPPQKXXXXXXSYYVSEQLLTHSEVVRLSHKIKAGL 688
                     G +  +  I   LL   Q          VSE+LL+H+EVV LS +IK GL
Sbjct: 161 TKRKTAIKTCGAMQLKSKISPELL---QHRLKGYVKGIVSEELLSHAEVVNLSERIKVGL 217

Query: 689 ALEERRSRLKQRLGCEPSDEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRLVMSIAQ 868
           +LEE +SRLK+RLGCEPSD+Q+A SL++SR  L++RMIEC+LAREKLAMSN+RLVMSIAQ
Sbjct: 218 SLEEHKSRLKERLGCEPSDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQ 277

Query: 869 RYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKG 964
           +YDN+GAEM D             EKFDSSKG
Sbjct: 278 KYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKG 309


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
           sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED:
           RNA polymerase sigma factor sigA-like isoform X2 [Citrus
           sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED:
           RNA polymerase sigma factor sigA-like isoform X3 [Citrus
           sinensis]
          Length = 508

 Score =  172 bits (437), Expect = 1e-40
 Identities = 107/218 (49%), Positives = 130/218 (59%), Gaps = 10/218 (4%)
 Frame = +2

Query: 341 EYLVDAVLLLQKSMLEKQWNLAPEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXX 520
           +Y V+A+LLLQKSMLEKQWNL+ E                       VTCSG+SA     
Sbjct: 105 DYSVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVP------VTCSGVSARQRRL 158

Query: 521 XXXXXXGGVDDEMMIPQF-------LLLPPQKXXXXXXSYY---VSEQLLTHSEVVRLSH 670
                   +     +PQ         ++ P+        Y    VSE+LLTH+EVVRLS 
Sbjct: 159 NSKKKI--LSQNKSVPQQNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSK 216

Query: 671 KIKAGLALEERRSRLKQRLGCEPSDEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRL 850
           KIK GL+L++ + RLK+RLGCEPS EQLA+SLR+SR  LQS ++ECSLAREKL MSN+RL
Sbjct: 217 KIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRL 276

Query: 851 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKG 964
           VMSIAQRYDNMGA+M D             EKFDSSKG
Sbjct: 277 VMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314


>ref|XP_004307835.1| PREDICTED: RNA polymerase sigma factor sigA-like [Fragaria vesca
           subsp. vesca]
          Length = 511

 Score =  172 bits (436), Expect = 2e-40
 Identities = 105/216 (48%), Positives = 127/216 (58%), Gaps = 8/216 (3%)
 Frame = +2

Query: 341 EYLVDAVLLLQKSMLEKQWNLAPEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXX 520
           EY V+A+LLLQKS+LEKQWNL+ E                       VTCSG+SA     
Sbjct: 111 EYSVEALLLLQKSLLEKQWNLSFEKKLSTRKITDNKIP---------VTCSGVSARQRRM 161

Query: 521 XXXXXXGGVDDEMMIPQF-----LLLPPQKXXXXXXSYY---VSEQLLTHSEVVRLSHKI 676
                    +   + P         + P         Y     S+ LLTH+EVVRLS KI
Sbjct: 162 STKRKAFSKNTSELQPSTNKYCRATISPSLLQNRTSGYVKGVTSDHLLTHTEVVRLSKKI 221

Query: 677 KAGLALEERRSRLKQRLGCEPSDEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRLVM 856
           K GL++EE +SRLK++LGCEPS EQLA+SLR+SR  LQS++I+CSLAREKL MSN+RLVM
Sbjct: 222 KIGLSVEEHKSRLKEKLGCEPSVEQLATSLRISRTELQSKLIQCSLAREKLTMSNVRLVM 281

Query: 857 SIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKG 964
           SIAQRYDNMGAEM D             EKFD+SKG
Sbjct: 282 SIAQRYDNMGAEMADLIQGGLIGLLRGIEKFDASKG 317


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
           gi|557539599|gb|ESR50643.1| hypothetical protein
           CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  170 bits (431), Expect = 7e-40
 Identities = 105/216 (48%), Positives = 129/216 (59%), Gaps = 8/216 (3%)
 Frame = +2

Query: 341 EYLVDAVLLLQKSMLEKQWNLAPEXXXXXXXXXXXXXXXXXXSEIDEVTCSGISAXXXXX 520
           +Y V+A+LLLQKSMLEKQWNL+ E                       VTCSG+SA     
Sbjct: 105 DYSVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVP------VTCSGVSARQRRL 158

Query: 521 XXXXXXGGVDDEMMIPQFL-----LLPPQKXXXXXXSYY---VSEQLLTHSEVVRLSHKI 676
                    +  ++          ++ P+        Y    VSE+LLTH+EVVRLS KI
Sbjct: 159 NSKKKILSQNKSVLQQNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKI 218

Query: 677 KAGLALEERRSRLKQRLGCEPSDEQLASSLRMSRATLQSRMIECSLAREKLAMSNIRLVM 856
           K GL+L++ + RLK+RLGCEPS EQLA+SLR+SR  LQS ++ECSLAREKL MSN+RLVM
Sbjct: 219 KTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVM 278

Query: 857 SIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKG 964
           SIAQRYDNMGA+M D             EKFDSSKG
Sbjct: 279 SIAQRYDNMGADMADLIQGGLIGLLRGIEKFDSSKG 314