BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00002374
         (2564 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus...  1402   0.0  
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  1295   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  1277   0.0  
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...  1264   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1142   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1142   0.0  
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]  1132   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1056   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1040   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1037   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1035   0.0  
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun...  1031   0.0  
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...  1021   0.0  
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...  1021   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...  1019   0.0  
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...  1017   0.0  
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...  1017   0.0  
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...  1014   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...  1012   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...  1004   0.0  

>gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus guttatus]
          Length = 1719

 Score = 1402 bits (3630), Expect = 0.0
 Identities = 690/858 (80%), Positives = 761/858 (88%), Gaps = 4/858 (0%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CSYI DIQ Q  K  G   G+SMFFLET+LVPPIRFRP AKGGDSVMEH  T+LLGKVLQ
Sbjct: 344  CSYISDIQRQKCKPFGNKTGYSMFFLETVLVPPIRFRPPAKGGDSVMEHPQTVLLGKVLQ 403

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            +NIALGNAH N AE S+II RWM+LQQSINV +DSKTA S +QK+   GICQ LEKK+G+
Sbjct: 404  SNIALGNAHVN-AEKSKIISRWMELQQSINVYFDSKTATSLAQKDSIAGICQFLEKKEGI 462

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FALKLTYPERVTPWNA KLR AV+NG
Sbjct: 463  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALKLTYPERVTPWNAAKLRGAVVNG 522

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            PDIHPGAT Y DSV+  +LP ++KMR+A+SRKLPSSR VV+QSGK  + EFEGK V RHL
Sbjct: 523  PDIHPGATTYVDSVTIVKLPPSQKMRVAISRKLPSSRGVVTQSGKFDDLEFEGKTVHRHL 582

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            QDGDIVLVNRQPTLHKPSIMAH+VRVL GERTLRMHYANCSSYNADFDGDEINVHFPQDE
Sbjct: 583  QDGDIVLVNRQPTLHKPSIMAHVVRVLHGERTLRMHYANCSSYNADFDGDEINVHFPQDE 642

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIV AVL+TMKNTF+ RSEF+QLLYGSGV
Sbjct: 643  ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFVNRSEFNQLLYGSGV 702

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
            FA+GPGS P + S KV+++D+EG+VES+LPA+WKPEPLWTGKQVITALLNHITRGCAP T
Sbjct: 703  FASGPGSLPKNNSRKVTLIDTEGVVESVLPAIWKPEPLWTGKQVITALLNHITRGCAPFT 762

Query: 1304 VKNQGKVPKNYFASASYKNGEEDQDHNAEHDLLIWKNELVRGVIDKAQFGKYGLVHTVQE 1125
            V+NQGK+PKNYF   SY  GEED+D NAEH+LL+WKNELVRGVIDKAQFGK+GLVHTVQE
Sbjct: 763  VENQGKIPKNYFFGNSYTRGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQE 822

Query: 1124 LYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEGEDVGEEVHCD 945
            LYG++SAGI LSALSR+FT+FLQ HGFTCGVDDLIILP++D QRKEKLEGEDVGE VHCD
Sbjct: 823  LYGASSAGIFLSALSRVFTLFLQIHGFTCGVDDLIILPDYDDQRKEKLEGEDVGEVVHCD 882

Query: 944  FVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKG 765
            FVKFKPGQIGP+ELQLEIEK IC+DRESATA+LDMKMKNKL ++LT EGSQILKHLLT G
Sbjct: 883  FVKFKPGQIGPDELQLEIEKVICTDRESATASLDMKMKNKLNSKLTREGSQILKHLLTAG 942

Query: 764  LLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYT 585
            LLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWD+T
Sbjct: 943  LLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDFT 1002

Query: 584  ARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYD 405
            +RAGGFITDRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYD
Sbjct: 1003 SRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYD 1062

Query: 404  YTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNSYISELPE 225
            YTVRD+DGSIVQFYYGEDG+DVH+TSFL NFKAL+DNRETI QKFQ+ REFNSYI +LPE
Sbjct: 1063 YTVRDADGSIVQFYYGEDGIDVHRTSFLNNFKALQDNRETICQKFQHKREFNSYIKKLPE 1122

Query: 224  GLEEEARRFIHETHGNTSGKHNASS----EQLHRNXXXXXXXXXXXXKAFTKERGFLELV 57
            GLEEEA+RFI ET   +  K + S+        +              A  ++  FLELV
Sbjct: 1123 GLEEEAKRFIQETQNKSLAKQSTSAGEGPHSSRKARKKEKLLKKEKAAAAYEQDAFLELV 1182

Query: 56   KQKYLTSLAESGEPVGVI 3
            KQKYL+SLA++GEPVGVI
Sbjct: 1183 KQKYLSSLAQAGEPVGVI 1200


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 1295 bits (3350), Expect = 0.0
 Identities = 631/858 (73%), Positives = 737/858 (85%), Gaps = 4/858 (0%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            C++ CDIQ Q+   SG + G SMFFL++ILVPPI+FRP AKGGDS+MEH HT+LLGKV+Q
Sbjct: 320  CTFFCDIQSQHHNTSGKVAGPSMFFLDSILVPPIKFRPPAKGGDSIMEHPHTVLLGKVVQ 379

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            ANIALGNAH N A  S+II R MDLQQS+NVL+DSKTA+   QK+   GICQ LEKK+G+
Sbjct: 380  ANIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGI 439

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYL+VNEIGIPP+FAL+LTYPER+TPWNA K+R AVING
Sbjct: 440  FRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFALRLTYPERLTPWNAVKMRDAVING 499

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            P+ HPGA ++ D +++ +LP+NKKMR+A+SRKLPSSR  V+QSG+  E+EFEGK+V RHL
Sbjct: 500  PENHPGAVSFADRIATVKLPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHL 559

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            QDGD+VLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANCS+YNADFDGDE+NVHFPQDE
Sbjct: 560  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 619

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIV AV++TMKNTFLT  EF+QLLYGSGV
Sbjct: 620  ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLTLHEFNQLLYGSGV 679

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
            FAAGP    G+ S KVSVVD EG+V+++LPAVWKP+PLWTGKQVITALLNH+T+GCAPCT
Sbjct: 680  FAAGPAPTSGNHSNKVSVVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTKGCAPCT 739

Query: 1304 VKNQGKVPKNYFASAS----YKNGEEDQDHNAEHDLLIWKNELVRGVIDKAQFGKYGLVH 1137
            VKN+GK+P  YF S S    Y++ EE +D  AE++ LIWKNELVRGVIDKAQFGK+GLVH
Sbjct: 740  VKNKGKIPYPYFLSESRLVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVH 799

Query: 1136 TVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEGEDVGEE 957
            T+QELYGSN AGILLSALSRLFTIFLQ HGFTCGVDDL+ILP++D++RKE+LEG+DVGEE
Sbjct: 800  TIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGVDDLVILPHYDIRRKEELEGDDVGEE 859

Query: 956  VHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHL 777
             HCDFVKFK G+IGP ELQLEIEKA+ S++E+ATA LDMKMKNKL N+    GSQ  K L
Sbjct: 860  AHCDFVKFKRGEIGPLELQLEIEKAMSSNKEAATAALDMKMKNKLANK----GSQFNKEL 915

Query: 776  LTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPP 597
            L KGLLKPFP+NCI++MT TGAKGSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLP FPP
Sbjct: 916  LLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPP 975

Query: 596  WDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK 417
            WD  +RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK
Sbjct: 976  WDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK 1035

Query: 416  VCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNSYIS 237
            VCYDYTVRD+DGSI+QFYYGEDGVDVH+TSFLKNFKAL++N+ETI QK ++ R+ NSYI 
Sbjct: 1036 VCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGRKLNSYIE 1095

Query: 236  ELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELV 57
            +LP+GLEE+ + F  +            +++L +             +   +E  FLELV
Sbjct: 1096 KLPDGLEEKVKHFWEK-----------RTKKLEKKLGKLVKKEEMVKQLKEEEADFLELV 1144

Query: 56   KQKYLTSLAESGEPVGVI 3
            +QKY +SLA+SGEPVGV+
Sbjct: 1145 RQKYFSSLADSGEPVGVL 1162


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 1277 bits (3305), Expect = 0.0
 Identities = 623/858 (72%), Positives = 729/858 (84%), Gaps = 4/858 (0%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            C++ CDIQ Q+   SG + G SMFFL++ILVPP++FRP AKGGDS+MEH HT+LLGKV+Q
Sbjct: 320  CTFFCDIQSQHRNTSGKVAGPSMFFLDSILVPPVKFRPPAKGGDSIMEHPHTVLLGKVIQ 379

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            ANIALGNAH N A  S+II R MDLQQS+NVL+DSKTA+   QK+   GICQ LEKK+G+
Sbjct: 380  ANIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGI 439

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYL+VNEIGIPP+FA +LTYPER+TPWNA K+R AVING
Sbjct: 440  FRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFASRLTYPERLTPWNAVKMRDAVING 499

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            P+ HPGA ++ D +++ +LP+NKKMR+A+SRKLPSSR  V+QSG+  E+EFEGK+V RHL
Sbjct: 500  PENHPGAISFADRIATVKLPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHL 559

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            QDGD+VLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANCS+YNADFDGDE+NVHFPQDE
Sbjct: 560  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 619

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIV AV++TMKNTFL+  EF+QLLYGSGV
Sbjct: 620  ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLSLHEFNQLLYGSGV 679

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
            FAAGP    G+ S KVS+VD EG+V+++LPAVWKP+PLWTGKQVITALLNH+T GC PCT
Sbjct: 680  FAAGPAPTSGNHSNKVSIVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTNGCPPCT 739

Query: 1304 VKNQGKVPKNYFASAS----YKNGEEDQDHNAEHDLLIWKNELVRGVIDKAQFGKYGLVH 1137
            VKN+GK+P  YF S S    Y++ EE +D  AE++ LIWKNELVRGVIDKAQFGK+GLVH
Sbjct: 740  VKNKGKIPYAYFLSESRLVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVH 799

Query: 1136 TVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEGEDVGEE 957
            T+QELYGSN AGILLSALSRLFTIFLQ HGFTCG+DDL+ILP++D++RKE+LEG+DVGEE
Sbjct: 800  TIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEELEGDDVGEE 859

Query: 956  VHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHL 777
             HCDFVKFK G+IGP ELQLEIEKAI S++E ATA LDMKMKNKL N+    GSQ  K L
Sbjct: 860  AHCDFVKFKRGEIGPLELQLEIEKAISSNKEVATAALDMKMKNKLANK----GSQFNKEL 915

Query: 776  LTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPP 597
            L KGLLKPFP+NCI++MT TGAKGSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLP FP 
Sbjct: 916  LLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPA 975

Query: 596  WDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK 417
            WD  +RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK
Sbjct: 976  WDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK 1035

Query: 416  VCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNSYIS 237
            VCYDYTVRD+DGSI+QFYYGEDGVDVH+TSFLKNFKAL++N+ETI QK ++  + NSYI 
Sbjct: 1036 VCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGCKLNSYIE 1095

Query: 236  ELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELV 57
            +LP+GL E+ + F             + +++L +             +   +E  FLELV
Sbjct: 1096 KLPDGLGEKVKHF-----------WESKTKKLEKKLGMLVKKEEMVKQLKEEEADFLELV 1144

Query: 56   KQKYLTSLAESGEPVGVI 3
             QKY +SLA+SGEPVGV+
Sbjct: 1145 GQKYFSSLADSGEPVGVL 1162


>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score = 1264 bits (3272), Expect = 0.0
 Identities = 635/854 (74%), Positives = 715/854 (83%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS+ICDIQ Q  K+SG    +S+FF ETILV PI+FR   +GG+SVMEH HT+LLGKVL+
Sbjct: 290  CSFICDIQQQQGKLSGNRMDYSIFFFETILVNPIKFRAPTRGGNSVMEHPHTVLLGKVLE 349

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            +NIAL NA     + S+ I  WM+LQQSINVL+D K+  S S+K G  GICQ LEKK+G+
Sbjct: 350  SNIALRNA-----QPSKFISHWMELQQSINVLFDGKS--STSKKAGVSGICQLLEKKEGV 402

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWNA KLR+AV+NG
Sbjct: 403  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNATKLRNAVVNG 462

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            PDIHPGAT Y DSV++ +LP NKK R+A+SRKLPSSR   ++ G+  + +FEGK+V RHL
Sbjct: 463  PDIHPGATTYIDSVATMKLPLNKKARVALSRKLPSSRGATAEVGE-SQLDFEGKVVYRHL 521

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            QDGDIVLVNRQPTLHKPSIMAH+VRVL GERTLRMHYANCSSYNADFDGDEINVHFPQDE
Sbjct: 522  QDGDIVLVNRQPTLHKPSIMAHVVRVLKGERTLRMHYANCSSYNADFDGDEINVHFPQDE 581

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISRAEAYNIVNANEQYIVPT+GDTVRGLIQDHIVAAVL+T+K TFLT SEF+QLLYGSGV
Sbjct: 582  ISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVAAVLLTLKRTFLTCSEFNQLLYGSGV 641

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
            FA G  S+  + S KVS    +GL+  ILPA+WKPEPLWTGKQVI+ALLNHITRG APC 
Sbjct: 642  FALGRHSYVSNSSQKVSGHAPDGLINPILPAIWKPEPLWTGKQVISALLNHITRGFAPCI 701

Query: 1304 VKNQGKVPKNYFASASYKNGEEDQDHNAEHDLLIWKNELVRGVIDKAQFGKYGLVHTVQE 1125
            VKNQ K+P  YF        +ED+D NAE++ L+WKNELVRGVIDKAQFGK+GLVHTVQE
Sbjct: 702  VKNQTKLPSTYFTDNPAME-DEDEDQNAENNFLVWKNELVRGVIDKAQFGKFGLVHTVQE 760

Query: 1124 LYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEGEDVGEEVHCD 945
            LYGS SAG LL+A SRLFT+FLQ HGFTCGVDDL+ILP++D++RKEKLE EDVGEEVHCD
Sbjct: 761  LYGSESAGNLLTAFSRLFTMFLQIHGFTCGVDDLMILPDYDVKRKEKLEQEDVGEEVHCD 820

Query: 944  FVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKG 765
            F+ FKPGQIG EELQLEIEKAIC DRESATA LDMKMKNKLT +LTTEGSQ+LKHLLT G
Sbjct: 821  FINFKPGQIGREELQLEIEKAICRDRESATALLDMKMKNKLTMKLTTEGSQVLKHLLTDG 880

Query: 764  LLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYT 585
            LLKPFP+NCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWD+ 
Sbjct: 881  LLKPFPQNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDFA 940

Query: 584  ARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYD 405
            +RAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YD
Sbjct: 941  SRAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVGYD 1000

Query: 404  YTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNSYISELPE 225
            YTVRD+DGSI+QF YGEDGVD HKTSFLKNFKAL +N+ETI QKFQN  +FN YI +LPE
Sbjct: 1001 YTVRDADGSIIQFCYGEDGVDAHKTSFLKNFKALSNNQETIQQKFQNKHQFNFYIKKLPE 1060

Query: 224  GLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKY 45
            GLEEEA  FI +    +S K      +                        F+ +V+QK+
Sbjct: 1061 GLEEEAMHFIQKAQTLSSVKQVVDHHK------------------------FMRVVEQKF 1096

Query: 44   LTSLAESGEPVGVI 3
            L+SL  +GEPVGVI
Sbjct: 1097 LSSLVPAGEPVGVI 1110


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1142 bits (2955), Expect = 0.0
 Identities = 579/869 (66%), Positives = 684/869 (78%), Gaps = 15/869 (1%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS+I DI  +    SG   G+SMFFLETILVPPI+FRP +KG  SVMEH  T+LLGKVLQ
Sbjct: 313  CSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQ 372

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            ANIALGNAH N++E S+II RWMDLQQSINVL+D KTA  Q Q++   GICQ LEKK+G+
Sbjct: 373  ANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGV 432

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPE+VTPWN  KLR A+ING
Sbjct: 433  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIING 492

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            P+IHPGAT+Y D +S+ +L  NKKMRI++SRKLPSSR VV+Q G+  ++EFEGKIV RHL
Sbjct: 493  PEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHL 552

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            QDGDIVLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANCS+YNADFDGDE+NVHFPQDE
Sbjct: 553  QDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 612

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISRAEAYNIVNAN QYIVP++GD +RGLIQDHIV+AVL+T K+TFLTR +++QLLY SG+
Sbjct: 613  ISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL 672

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
             ++G GS  G    KVSV+DSE  ++ +LPA+WKPEPLW+GKQVITA+LNHITRG  P T
Sbjct: 673  -SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFT 731

Query: 1304 VKNQGKVPKNYFAS-----ASYKNGEEDQDH---------NAEHDLLIWKNELVRGVIDK 1167
             +  GK+P+ YF S      S K  +   D          + E+ LLI KNELVRGVIDK
Sbjct: 732  TEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDK 791

Query: 1166 AQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKE 987
            AQF KYGLVH VQELYGSN+AGILLS LSRLFT+FLQ HGFTCGVDDL+I PN+D+ RK 
Sbjct: 792  AQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKI 851

Query: 986  KLE-GEDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRL 810
            +L+  E++GE VHC F+    G+I P +LQ+E+EK I S+ E+A   LD  MKN+L N L
Sbjct: 852  ELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNEL-NEL 910

Query: 809  TTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRM 630
            T   S++ K LL KGL+KPFPKNC+S+MTTTGAKGSTVNF QIS++LGQQ+LEGKRVPRM
Sbjct: 911  T---SKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRM 967

Query: 629  VSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 450
            VSGKTLP FPPWD  ARAGGFI+DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQ
Sbjct: 968  VSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1027

Query: 449  RCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKF 270
            RCLIKNLE LKVCYDYTVRDSDGSIVQF YG+DGVDVH+TSF+  F+AL  N E + +KF
Sbjct: 1028 RCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKF 1087

Query: 269  QNHREFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKA 90
                +FN YI +LP+ L ++ ++FI           N                       
Sbjct: 1088 GQDGKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDN----------------------- 1124

Query: 89   FTKERGFLELVKQKYLTSLAESGEPVGVI 3
              K++ F+ LVKQKY++SLA+ GEPVGV+
Sbjct: 1125 MKKQKDFVNLVKQKYISSLAQPGEPVGVL 1153


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1142 bits (2955), Expect = 0.0
 Identities = 579/869 (66%), Positives = 684/869 (78%), Gaps = 15/869 (1%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS+I DI  +    SG   G+SMFFLETILVPPI+FRP +KG  SVMEH  T+LLGKVLQ
Sbjct: 384  CSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQ 443

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            ANIALGNAH N++E S+II RWMDLQQSINVL+D KTA  Q Q++   GICQ LEKK+G+
Sbjct: 444  ANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGV 503

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPE+VTPWN  KLR A+ING
Sbjct: 504  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIING 563

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            P+IHPGAT+Y D +S+ +L  NKKMRI++SRKLPSSR VV+Q G+  ++EFEGKIV RHL
Sbjct: 564  PEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHL 623

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            QDGDIVLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANCS+YNADFDGDE+NVHFPQDE
Sbjct: 624  QDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 683

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISRAEAYNIVNAN QYIVP++GD +RGLIQDHIV+AVL+T K+TFLTR +++QLLY SG+
Sbjct: 684  ISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL 743

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
             ++G GS  G    KVSV+DSE  ++ +LPA+WKPEPLW+GKQVITA+LNHITRG  P T
Sbjct: 744  -SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFT 802

Query: 1304 VKNQGKVPKNYFAS-----ASYKNGEEDQDH---------NAEHDLLIWKNELVRGVIDK 1167
             +  GK+P+ YF S      S K  +   D          + E+ LLI KNELVRGVIDK
Sbjct: 803  TEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDK 862

Query: 1166 AQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKE 987
            AQF KYGLVH VQELYGSN+AGILLS LSRLFT+FLQ HGFTCGVDDL+I PN+D+ RK 
Sbjct: 863  AQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKI 922

Query: 986  KLE-GEDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRL 810
            +L+  E++GE VHC F+    G+I P +LQ+E+EK I S+ E+A   LD  MKN+L N L
Sbjct: 923  ELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNEL-NEL 981

Query: 809  TTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRM 630
            T   S++ K LL KGL+KPFPKNC+S+MTTTGAKGSTVNF QIS++LGQQ+LEGKRVPRM
Sbjct: 982  T---SKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRM 1038

Query: 629  VSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 450
            VSGKTLP FPPWD  ARAGGFI+DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQ
Sbjct: 1039 VSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1098

Query: 449  RCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKF 270
            RCLIKNLE LKVCYDYTVRDSDGSIVQF YG+DGVDVH+TSF+  F+AL  N E + +KF
Sbjct: 1099 RCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKF 1158

Query: 269  QNHREFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKA 90
                +FN YI +LP+ L ++ ++FI           N                       
Sbjct: 1159 GQDGKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDN----------------------- 1195

Query: 89   FTKERGFLELVKQKYLTSLAESGEPVGVI 3
              K++ F+ LVKQKY++SLA+ GEPVGV+
Sbjct: 1196 MKKQKDFVNLVKQKYISSLAQPGEPVGVL 1224


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score = 1132 bits (2927), Expect = 0.0
 Identities = 579/887 (65%), Positives = 685/887 (77%), Gaps = 33/887 (3%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS+I DI  +    SG   G+SMFFLETILVPPI+FRP +KG  SVMEH  T+LLGKVLQ
Sbjct: 432  CSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQ 491

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            ANIALGNAH N++E S+II RWMDLQQSINVL+D KTA  Q Q++   GICQ LEKK+G+
Sbjct: 492  ANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGV 551

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPE+VTPWN  KLR A+ING
Sbjct: 552  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIING 611

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            P+IHPGAT+Y D +S+ +L  NKKMRI++SRKLPSSR VV+Q G+  ++EFEGKIV RHL
Sbjct: 612  PEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHL 671

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANC------------------SS 1719
            QDGDIVLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANC                  S+
Sbjct: 672  QDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCRVESEHISMLDLDDCSDSST 731

Query: 1718 YNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMK 1539
            YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QYIVP++GD +RGLIQDHIV+AVL+T K
Sbjct: 732  YNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKK 791

Query: 1538 NTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGK 1359
            +TFLTR +++QLLY SG+ ++G GS  G    KVSV+DSE  ++ +LPA+WKPEPLW+GK
Sbjct: 792  DTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGK 850

Query: 1358 QVITALLNHITRGCAPCTVKNQGKVPKNYFAS-----ASYKNGEEDQDH---------NA 1221
            QVITA+LNHITRG  P T +  GK+P+ YF S      S K  +   D          + 
Sbjct: 851  QVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHG 910

Query: 1220 EHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFT 1041
            E+ LLI KNELVRGVIDKAQF KYGLVH VQELYGSN+AGILLS LSRLFT+FLQ HGFT
Sbjct: 911  EYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFT 970

Query: 1040 CGVDDLIILPNFDLQRKEKLE-GEDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRE 864
            CGVDDL+I PN+D+ RK +L+  E++GE VHC F+    G+I P +LQ+E+EK I S+ E
Sbjct: 971  CGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGE 1030

Query: 863  SATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQ 684
            +A   LD  MKN+L N LT   S++ K LL KGL+KPFPKNC+S+MTTTGAKGSTVNF Q
Sbjct: 1031 AAITRLDRMMKNEL-NELT---SKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQ 1086

Query: 683  ISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAG 504
            IS++LGQQ+LEGKRVPRMVSGKTLP FPPWD  ARAGGFI+DRFL+GL PQEYYFHCMAG
Sbjct: 1087 ISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAG 1146

Query: 503  REGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSF 324
            REGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDYTVRDSDGSIVQF YG+DGVDVH+TSF
Sbjct: 1147 REGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSF 1206

Query: 323  LKNFKALEDNRETIWQKFQNHREFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQ 144
            +  F+AL  N+E + +KF    +FN YI +LP+ L ++ ++FI           N     
Sbjct: 1207 ITEFEALAVNQEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDN----- 1261

Query: 143  LHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVI 3
                                K++ F+ LVKQKY++SLA+ GEPVGV+
Sbjct: 1262 ------------------MKKQKDFVNLVKQKYISSLAQPGEPVGVL 1290


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1056 bits (2730), Expect = 0.0
 Identities = 550/869 (63%), Positives = 662/869 (76%), Gaps = 15/869 (1%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS+I D+Q Q  +      G +MFFLETILVPPI+FRP  KGGDSVMEH  T+LL KVLQ
Sbjct: 315  CSFISDLQQQ--EFGKRKAGPAMFFLETILVPPIKFRPPTKGGDSVMEHPQTVLLSKVLQ 372

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            +NI+LG+AH N  EHS+I+ RW+DLQQSIN L+DSKTA    Q+ G  GICQ LEKK+GL
Sbjct: 373  SNISLGDAHINK-EHSKIVRRWLDLQQSINTLFDSKTAKGPGQREGAPGICQLLEKKEGL 431

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVN+ACRSVISPDPY+ VNEIGIPP FA+KLTYPERVTPWN  KLR+AVING
Sbjct: 432  FRQKMMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVING 491

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
             + HPGAT+Y D +S  +LP  +K RI++SRKLPSSR  V+Q+GK  E EFEGKIV RHL
Sbjct: 492  SECHPGATHYVDKLSINKLPPARKARISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHL 551

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCS-SYNADFDGDEINVHFPQD 1668
            QDGD+VLVNRQPTLHKPSIMAH+VRVL GE+TLRMHYANCS +YNADFDGDE+NVHFPQD
Sbjct: 552  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQD 611

Query: 1667 EISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSG 1488
            E+SRAEAYNIVNAN Q++ P+ G+ +RGLIQDHIV+AVL+T K+TFL++ EF+QLLY SG
Sbjct: 612  EVSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSG 671

Query: 1487 VFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPC 1308
            V   GP S  G    KV    SE  ++++ PA+WKP+PLWTGKQVITA+LNHIT    P 
Sbjct: 672  VSTVGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPF 731

Query: 1307 TVKNQGKVPKNYFASASYKN---GEEDQDHNA-------EHDLLIWKNELVRGVIDKAQF 1158
            TV+   K+P N+F S + ++    EE  D +A       E  +L++KNELVRGVIDK QF
Sbjct: 732  TVEKDAKIPSNFFKSRANEDKPCQEEKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQF 791

Query: 1157 GKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLE 978
            G+YGLVHTV EL GS++AGILLS LSRLFT +LQ HGFTCGVDDL+IL N D +RK++LE
Sbjct: 792  GEYGLVHTVHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLE 851

Query: 977  G-EDVGEEVHCDFVKFKPG--QIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLT 807
              E  GE VH +F+  K    +I P  +QL IEK I SD +SA A LD +M N+L    T
Sbjct: 852  WCEKSGEAVHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSALAYLDRQMSNELN---T 908

Query: 806  TEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMV 627
               S ++ +LL+ GLLKP  KNCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMV
Sbjct: 909  KTSSGVISNLLSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMV 968

Query: 626  SGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 447
            SGKTLP F PWD+ AR+GG+ITDRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR
Sbjct: 969  SGKTLPCFHPWDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1028

Query: 446  CLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQ 267
            CLIKNLE LK+ YD+TVRD+DGS+VQFYYGEDGVDVH+TSF+  FK L  N++ I+++  
Sbjct: 1029 CLIKNLECLKIGYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFKELALNQDMIYKRSG 1088

Query: 266  NH-REFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKA 90
                 FNSYISELPE L+E+A RF+ +   +  G+  ++                     
Sbjct: 1089 GQLGAFNSYISELPEALKEKADRFLDDF--SIMGRIASN--------------------- 1125

Query: 89   FTKERGFLELVKQKYLTSLAESGEPVGVI 3
              K      L+KQK+L SLA+ GEPVGV+
Sbjct: 1126 LVKREDLYNLMKQKFLLSLAQPGEPVGVL 1154


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1040 bits (2689), Expect = 0.0
 Identities = 532/871 (61%), Positives = 658/871 (75%), Gaps = 17/871 (1%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS+I DI  Q     G   G SMFFLE++LVPPI+FRP AKGGDSVMEH  T+LL KVLQ
Sbjct: 293  CSFISDISQQGH---GNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQ 349

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            +NI+LGN H N +EHS+I+  WMDLQQSIN+L+DSK+A    + +   GICQ LEKK+G+
Sbjct: 350  SNISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGM 409

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVT WN  KLR+A+ING
Sbjct: 410  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIING 469

Query: 2024 PDIHPGATNYEDSVSSFRL--PANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRR 1851
            P+ HPGAT+Y D +++ +L    ++K RI++SRKLPSSR VV   G   ++EFEGKIV R
Sbjct: 470  PETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQG-CDDYEFEGKIVNR 528

Query: 1850 HLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCS-SYNADFDGDEINVHFP 1674
            HLQDGDIVLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS +YNADFDGDE+NVHFP
Sbjct: 529  HLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSITYNADFDGDEMNVHFP 588

Query: 1673 QDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYG 1494
            QDEISRAEAYNIVNAN QY+ PT G+ +R LIQDHI++AVL+T K+TFL   EFSQLLY 
Sbjct: 589  QDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYS 648

Query: 1493 SGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCA 1314
            SG+  +   +       K+  +D +  +  +LPAVWKPEPLWTGKQV+TALL+HIT+G  
Sbjct: 649  SGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSP 708

Query: 1313 PCTVKNQGKVPKNYFASASYKNGEEDQDHNAEHD-----------LLIWKNELVRGVIDK 1167
            P  V+   K+P+ +F      N    +  + + D           LLI+KNELVRGVIDK
Sbjct: 709  PFFVEKDVKIPRGFFKCRDMGNNSSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDK 768

Query: 1166 AQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKE 987
            AQFG YGLVHTVQELYGSN+AG+LLS +SRLFT+FLQ HGFTCGVDDL+++   D +R++
Sbjct: 769  AQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREK 828

Query: 986  KLE-GEDVGEEVHCDFVKFKPGQ-IGPEELQLEIEKAICSDRESATATLDMKMKNKLTNR 813
            +L+  E +GE+VH  F+K K G+ + P  LQL IEK I  + E+A  +LD KM ++L  R
Sbjct: 829  QLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNER 888

Query: 812  LTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPR 633
              T  S++LK LL++GLLKP  KNCIS+MTT+GAKG T NFQQIS++LGQQ+LEGKRVPR
Sbjct: 889  --TGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPR 946

Query: 632  MVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 453
            MVSGKTLP FPPWD+ +RAGGFI DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYL
Sbjct: 947  MVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 1006

Query: 452  QRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQK 273
            QRCLIKNLESLK+CYD+TVRD+DGS++QF YGEDGVDVHKT+F+  F+AL  N++ +++ 
Sbjct: 1007 QRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYEN 1066

Query: 272  FQNH-REFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXX 96
              +   ++N +I+ELP  L E+   FI+    N+  K       L               
Sbjct: 1067 SHHQLGKYNVFINELPSALREKG-EFIY----NSLSKDKVPGLVL--------------- 1106

Query: 95   KAFTKERGFLELVKQKYLTSLAESGEPVGVI 3
                 +  F+ L++ KYL+SLA+ GEPVGV+
Sbjct: 1107 -----KEDFIRLLENKYLSSLAQPGEPVGVL 1132


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1037 bits (2681), Expect = 0.0
 Identities = 535/863 (61%), Positives = 649/863 (75%), Gaps = 9/863 (1%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CSYI DIQ Q     G   G SMFFLE I VPPI+FRP  KGGD+VMEH  T+LL KVLQ
Sbjct: 307  CSYINDIQDQGF---GKKAGHSMFFLENIFVPPIKFRPPTKGGDNVMEHPQTVLLTKVLQ 363

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
             NI+LG+AH N ++ S+++ RWMDLQQS+N+L+D+KTA+ +  ++   GICQ LEKK+G+
Sbjct: 364  CNISLGDAHLNKSDPSKVLSRWMDLQQSVNMLFDNKTASGK--RDVATGICQLLEKKEGI 421

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+L+YPERVTPWN  KLR+A++NG
Sbjct: 422  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTPWNVVKLRNAILNG 481

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            P+ HPGAT+Y D VS  +LP   K+    SRKLP+SR V+   GKI +HEFEGK+V RHL
Sbjct: 482  PESHPGATHYADKVSIVKLPPKGKLLSLTSRKLPTSRGVILHQGKISDHEFEGKVVYRHL 541

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            +DGD+VLVNRQPTLHKPSIMAHIVRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQDE
Sbjct: 542  KDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDE 601

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISRAEAYNIVNAN QY+ PT GD +R LIQDHIV+A L+T K+TFL+  EF+QLLY SGV
Sbjct: 602  ISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGV 661

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
              AG GS  G    KV + +SE  +    PA+WKPEPLWTGKQVI+ALL +ITRG  P T
Sbjct: 662  SMAGLGSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWTGKQVISALLYYITRGSPPFT 721

Query: 1304 VKNQGKVPKNYFASASYKNGEEDQDHNAEHD------LLIWKNELVRGVIDKAQFGKYGL 1143
             +   K+P N+F +   K     +D + + D      LLI+KN+LVRGV+DKAQFG YG+
Sbjct: 722  AEKNAKIPSNFFKTQIRKGKRYTEDTSKKKDKPDEDKLLIYKNDLVRGVVDKAQFGDYGM 781

Query: 1142 VHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDV 966
            +HTVQELYGSN AG LLSALSRLFT FLQ HGFTCGVDDL++    D++R  +L+  E +
Sbjct: 782  IHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEII 841

Query: 965  GEEVHCDFVKFKPGQ-IGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQI 789
            G+ VH +F+  K    I P  LQL IEK I S+ E+A  TLD KM + L +R +   S I
Sbjct: 842  GDSVHREFIGVKNSDNIDPVTLQLNIEKKIRSNGEAAL-TLDRKMTSNLNSRTS---SGI 897

Query: 788  LKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLP 609
            LK LL++G+LKP  KNCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLP
Sbjct: 898  LKKLLSEGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLP 957

Query: 608  SFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 429
             FPPWD + RAGGFI DRFL+ L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNL
Sbjct: 958  CFPPWDCSPRAGGFIIDRFLTALHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNL 1017

Query: 428  ESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFN 249
            E LKVCYD+TVRD+DGSI+QF+YGEDGVDVH+TSF+  F AL  N+E ++  +    + +
Sbjct: 1018 ECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFITEFGALSTNKELVFSNYCRQLDRS 1077

Query: 248  S-YISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERG 72
            S YI++LPE LE +A +F        S + N  S +                     +  
Sbjct: 1078 SPYINKLPEALEGKAEKF--------SKQRNLGSME---------------------QAD 1108

Query: 71   FLELVKQKYLTSLAESGEPVGVI 3
            FL L++ KY++ LA+ GEPVGV+
Sbjct: 1109 FLRLMEHKYVSCLAQPGEPVGVL 1131


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1035 bits (2677), Expect = 0.0
 Identities = 533/868 (61%), Positives = 660/868 (76%), Gaps = 14/868 (1%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS+I DI  Q     G   G SMFFLE++LVPPI+FRP AKGGDSVMEH  T+LL KVLQ
Sbjct: 299  CSFISDISQQGH---GNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQ 355

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            +NI+LGN H N +EHS+I+  WMDLQQSIN+L+DSK+A    + +   GICQ LEKK+G+
Sbjct: 356  SNISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGM 415

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVT WN  KLR+A+ING
Sbjct: 416  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIING 475

Query: 2024 PDIHPGATNYEDSVSSFRL--PANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRR 1851
            P+ HPGAT+Y D +++ +L    ++K RI++SRKLPSSR VV   G   ++EFEGKIV R
Sbjct: 476  PETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQG-CDDYEFEGKIVNR 534

Query: 1850 HLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCS-SYNADFDGDEINVHFP 1674
            HLQDGDIVLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS +YNADFDGDE+NVHFP
Sbjct: 535  HLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSITYNADFDGDEMNVHFP 594

Query: 1673 QDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYG 1494
            QDEISRAEAYNIVNAN QY+ PT G+ +R LIQDHI++AVL+T K+TFL   EFSQLLY 
Sbjct: 595  QDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYS 654

Query: 1493 SGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCA 1314
            SG+  +   +       K+  +D +  +  +LPAVWKPEPLWTGKQV+TALL+HIT+G  
Sbjct: 655  SGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSP 714

Query: 1313 PCTVKNQGKVPKNYFA-----SASYKNGEEDQDHNAEHD---LLIWKNELVRGVIDKAQF 1158
            P  V+   K+P+ +       S   ++ + D+   A  D   LLI+KNELVRGVIDKAQF
Sbjct: 715  PFFVEKDVKIPRGFLILDEGNSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQF 774

Query: 1157 GKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLE 978
            G YGLVHTVQELYGSN+AG+LLS +SRLFT+FLQ HGFTCGVDDL+++   D +R+++L+
Sbjct: 775  GDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQ 834

Query: 977  -GEDVGEEVHCDFVKFKPGQ-IGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTT 804
              E +GE+VH  F+K K G+ + P  LQL IEK I  + E+A  +LD KM ++L  R  T
Sbjct: 835  ICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNER--T 892

Query: 803  EGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVS 624
              S++LK LL++GLLKP  KNCIS+MTT+GAKG T NFQQIS++LGQQ+LEGKRVPRMVS
Sbjct: 893  GNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVS 952

Query: 623  GKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 444
            GKTLP FPPWD+ +RAGGFI DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC
Sbjct: 953  GKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1012

Query: 443  LIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQN 264
            LIKNLESLK+CYD+TVRD+DGS++QF YGEDGVDVHKT+F+  F+AL  N++ +++   +
Sbjct: 1013 LIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHH 1072

Query: 263  H-REFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAF 87
               ++N +I+ELP  L E+   FI+    N+  K       L                  
Sbjct: 1073 QLGKYNVFINELPSALREKG-EFIY----NSLSKDKVPGLVL------------------ 1109

Query: 86   TKERGFLELVKQKYLTSLAESGEPVGVI 3
              +  F+ L++ KYL+SLA+ GEPVGV+
Sbjct: 1110 --KEDFIRLLENKYLSSLAQPGEPVGVL 1135


>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
            gi|462398594|gb|EMJ04262.1| hypothetical protein
            PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score = 1031 bits (2667), Expect = 0.0
 Identities = 527/881 (59%), Positives = 654/881 (74%), Gaps = 27/881 (3%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS+I DIQ Q +  +G   G+SMFFLET+LVPPI+FRP +KGGDSVMEH  T+LL KVL+
Sbjct: 227  CSFISDIQCQETGTNG---GYSMFFLETVLVPPIKFRPPSKGGDSVMEHPQTVLLSKVLE 283

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            AN++L    TN  EHSRII RW DLQ+SINV+++SKTA  Q Q++   GICQ LEKK+GL
Sbjct: 284  ANVSLSQTLTN-LEHSRIIRRWRDLQESINVMFNSKTAAGQGQRDAAPGICQLLEKKEGL 342

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FA +LTYPERVTPWN  KLR+A++NG
Sbjct: 343  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFATRLTYPERVTPWNVDKLRNAIVNG 402

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
             +IHPGAT Y D      L  N++ RI++SRKLPSS+  V Q GK  +++ E KIV RHL
Sbjct: 403  SEIHPGATQYVDKSGPKILRQNRRERISISRKLPSSKGAVMQHGKGSDNDIESKIVHRHL 462

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            +DGDIVLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDE+NVHFPQDE
Sbjct: 463  RDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDE 522

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISR+EAYNIVNAN QY+ PT GD +R LIQDH+++AVL+T K+TFL   +F+QLLY S V
Sbjct: 523  ISRSEAYNIVNANNQYVKPTSGDPIRALIQDHVISAVLLTKKDTFLRWDQFNQLLYSSCV 582

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
             A    +  G    KV + +SEG ++ +LPA+WKPEPLWTGKQVITALLNHITRG  P T
Sbjct: 583  SARVSDAFSGKPDKKVFMFNSEGTMQPLLPAIWKPEPLWTGKQVITALLNHITRGSPPVT 642

Query: 1304 VKNQGKVPKNYF------------------------ASASYKNGEEDQDHNAEHDLLIWK 1197
            V+   K+P+ +F                          A+ K+  ++++   E+ LLI++
Sbjct: 643  VERDAKIPRGFFNCKNVEGEDKSGNDGQQKKRKPSKEQATDKDSSKEKEEPDENHLLIYR 702

Query: 1196 NELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLII 1017
            N LVRGVIDKAQFG YGLVHTVQE YGS++AG LLS LS LFT++LQ HGFTCG+DDL++
Sbjct: 703  NNLVRGVIDKAQFGDYGLVHTVQEFYGSDTAGKLLSVLSHLFTVYLQMHGFTCGIDDLLL 762

Query: 1016 LPNFDLQRKEKLEG-EDVGEEVHCDFVKFKP-GQIGPEELQLEIEKAICSDRESATATLD 843
            L + D + K++LE  EDVGE V+ DF++ K   +  P ELQL IE  I S+ ESA A+LD
Sbjct: 763  LESKDAKMKDQLESCEDVGENVYRDFIEVKDVKRKDPVELQLNIENFIRSNGESALASLD 822

Query: 842  MKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQ 663
             +M ++L N+  T  S + K LL +GL KP  KNCI +MTT+GAKGS  N QQI++YLGQ
Sbjct: 823  RRMISQLNNK--TSNSDVFKQLLLRGLSKPSVKNCIYLMTTSGAKGSVANLQQITSYLGQ 880

Query: 662  QELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDT 483
            QELEGKRVP+M+SGKTLP FPPWD+++RAGGFI DRFL+GL PQEYYFHCMAGREGLVDT
Sbjct: 881  QELEGKRVPQMISGKTLPCFPPWDWSSRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDT 940

Query: 482  AVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKAL 303
            AVKTSRSGYLQRC+IKNLE LKV YD TVRD+DGSI+QF YGEDG+DVH TSF++ F++L
Sbjct: 941  AVKTSRSGYLQRCIIKNLECLKVSYDNTVRDADGSIIQFRYGEDGIDVHMTSFIQKFESL 1000

Query: 302  EDNRETIWQKFQNHRE-FNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXX 126
              N+E   +K +   +  N YI +LP  L+E+A +F+H          N + ++   N  
Sbjct: 1001 IANKEMFHKKGRRQMDKLNPYIKDLPLALKEKAEKFVH----------NLALKEKDHNF- 1049

Query: 125  XXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVI 3
                           +  FL+L++ KYL SLA+ GEPVGV+
Sbjct: 1050 ---------------QEDFLKLMEHKYLCSLAQPGEPVGVL 1075


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
            gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
            isoform 3 [Theobroma cacao]
          Length = 1400

 Score = 1021 bits (2640), Expect = 0.0
 Identities = 537/878 (61%), Positives = 656/878 (74%), Gaps = 24/878 (2%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS I DIQ Q     G   G+SMFFLETILVPPI+FR   KGGDSVMEH  T+LL KVLQ
Sbjct: 31   CSIISDIQQQGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQ 87

Query: 2384 ANIALGNAHTNSAEHSRIIGR-WMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDG 2208
            ANI+LGNA+TN+ + S+ + R WMDLQQS+N+L+DSKTA SQ  ++   GICQ LEKK+G
Sbjct: 88   ANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGICQLLEKKEG 146

Query: 2207 LFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVIN 2028
            +FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  KLR A+IN
Sbjct: 147  MFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIIN 206

Query: 2027 GPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRH 1848
            G + HPGAT+Y D +S+ RLP ++K RI++SRKLPSSR  ++Q GK  ++EFEGKIV RH
Sbjct: 207  GSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRH 266

Query: 1847 LQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQD 1668
            LQDGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQD
Sbjct: 267  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQD 326

Query: 1667 EISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSG 1488
            EISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIV+AVL+T ++TFL+R EF+QLLY SG
Sbjct: 327  EISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSG 386

Query: 1487 VFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPC 1308
            V +    S  G    KV V  SE  +  I+PA+ KP+PLWTGKQVI+++L+HITRG  P 
Sbjct: 387  VSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPF 446

Query: 1307 TVKNQGKVPKNYFASASYKNGEEDQDHNA--------------------EHDLLIWKNEL 1188
            TV    K+P+++F +   KN +  ++ N                     E  +LI++N+L
Sbjct: 447  TVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDL 506

Query: 1187 VRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPN 1008
            VRGVIDKAQF  YGLVHTVQELYGSN+AGILLS  SRLFT+FLQ HGFTCGVDDL+I+ +
Sbjct: 507  VRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMED 566

Query: 1007 FDLQRKEKLEG-EDVGEEVHCDFVKFK-PGQIGPEELQLEIEKAICSDRESATATLDMKM 834
             D++RK++LE  E    E H +    K   +  P ELQLEIE+ I  D E+A   LD KM
Sbjct: 567  KDIERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKM 626

Query: 833  KNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQEL 654
             + L N  +++G  +L  LL++GL+K   +NCIS+MTT+GAKGS VNFQQIS++LGQQEL
Sbjct: 627  ISVL-NENSSKG--VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQEL 683

Query: 653  EGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVK 474
            EGKRVPRMVSGKTLP F PWD+ ARAGGFI+DRFLSGLRPQEYYFHCMAGREGLVDTAVK
Sbjct: 684  EGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVK 743

Query: 473  TSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDN 294
            TSRSGYLQRCLIKNLE LK+ YD+TVRD+DGSIVQF YGEDG+DVH+TSF+  F+AL  N
Sbjct: 744  TSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALN 803

Query: 293  RETIWQKFQNH-REFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXX 117
            ++ + +K  +   E +     LP+GL  +A +FI E             +  H+      
Sbjct: 804  QDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE----------EIKKYQHQK----- 848

Query: 116  XXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVI 3
                       K + FL L+K K+L+SLA+ GEPVGV+
Sbjct: 849  ----------IKPKDFLNLLKLKFLSSLAQPGEPVGVL 876


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1021 bits (2640), Expect = 0.0
 Identities = 537/878 (61%), Positives = 656/878 (74%), Gaps = 24/878 (2%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS I DIQ Q     G   G+SMFFLETILVPPI+FR   KGGDSVMEH  T+LL KVLQ
Sbjct: 323  CSIISDIQQQGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQ 379

Query: 2384 ANIALGNAHTNSAEHSRIIGR-WMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDG 2208
            ANI+LGNA+TN+ + S+ + R WMDLQQS+N+L+DSKTA SQ  ++   GICQ LEKK+G
Sbjct: 380  ANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGICQLLEKKEG 438

Query: 2207 LFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVIN 2028
            +FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  KLR A+IN
Sbjct: 439  MFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIIN 498

Query: 2027 GPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRH 1848
            G + HPGAT+Y D +S+ RLP ++K RI++SRKLPSSR  ++Q GK  ++EFEGKIV RH
Sbjct: 499  GSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRH 558

Query: 1847 LQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQD 1668
            LQDGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQD
Sbjct: 559  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQD 618

Query: 1667 EISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSG 1488
            EISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIV+AVL+T ++TFL+R EF+QLLY SG
Sbjct: 619  EISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSG 678

Query: 1487 VFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPC 1308
            V +    S  G    KV V  SE  +  I+PA+ KP+PLWTGKQVI+++L+HITRG  P 
Sbjct: 679  VSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPF 738

Query: 1307 TVKNQGKVPKNYFASASYKNGEEDQDHNA--------------------EHDLLIWKNEL 1188
            TV    K+P+++F +   KN +  ++ N                     E  +LI++N+L
Sbjct: 739  TVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDL 798

Query: 1187 VRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPN 1008
            VRGVIDKAQF  YGLVHTVQELYGSN+AGILLS  SRLFT+FLQ HGFTCGVDDL+I+ +
Sbjct: 799  VRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMED 858

Query: 1007 FDLQRKEKLEG-EDVGEEVHCDFVKFK-PGQIGPEELQLEIEKAICSDRESATATLDMKM 834
             D++RK++LE  E    E H +    K   +  P ELQLEIE+ I  D E+A   LD KM
Sbjct: 859  KDIERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKM 918

Query: 833  KNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQEL 654
             + L N  +++G  +L  LL++GL+K   +NCIS+MTT+GAKGS VNFQQIS++LGQQEL
Sbjct: 919  ISVL-NENSSKG--VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQEL 975

Query: 653  EGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVK 474
            EGKRVPRMVSGKTLP F PWD+ ARAGGFI+DRFLSGLRPQEYYFHCMAGREGLVDTAVK
Sbjct: 976  EGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVK 1035

Query: 473  TSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDN 294
            TSRSGYLQRCLIKNLE LK+ YD+TVRD+DGSIVQF YGEDG+DVH+TSF+  F+AL  N
Sbjct: 1036 TSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALN 1095

Query: 293  RETIWQKFQNH-REFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXX 117
            ++ + +K  +   E +     LP+GL  +A +FI E             +  H+      
Sbjct: 1096 QDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE----------EIKKYQHQK----- 1140

Query: 116  XXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVI 3
                       K + FL L+K K+L+SLA+ GEPVGV+
Sbjct: 1141 ----------IKPKDFLNLLKLKFLSSLAQPGEPVGVL 1168


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score = 1019 bits (2634), Expect = 0.0
 Identities = 518/863 (60%), Positives = 649/863 (75%), Gaps = 9/863 (1%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            C YI DIQ       G   G SMFFLE I VPPI+FRP  KG D V EHA T+LL +VL+
Sbjct: 300  CLYISDIQGLGI---GKKAGHSMFFLENIYVPPIKFRPPTKGDDKVSEHAQTVLLTRVLE 356

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            +NI+LG AH N ++ S ++ RWMDLQ+S+N+L+D+KTA+ +SQK+   GICQ LEKK+G+
Sbjct: 357  SNISLGQAHLNKSDASVVLRRWMDLQRSVNLLFDNKTASGESQKDLVTGICQLLEKKEGI 416

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  +LR+A++NG
Sbjct: 417  FRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVELRNAILNG 476

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            P+ HPGAT Y D  S+ +LP +++ R   SR+L SSR V+  +GKI ++EFEGK+V RHL
Sbjct: 477  PETHPGATLYADKTSTLKLPLDRRSRSLTSRRLQSSRGVIMHNGKIHDNEFEGKVVYRHL 536

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            +DGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQDE
Sbjct: 537  KDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDE 596

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISRAEAYNIVNAN QY+ PT GD +R LIQDHIV+A L+T K+TFL+  EF+QLLY SGV
Sbjct: 597  ISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGV 656

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
               G G  PG    K+ + +S+  +    PA++KPEPLWTGKQVI+ALL +IT+G  P T
Sbjct: 657  SMTGMGPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFT 716

Query: 1304 VKNQGKVPKNYFASASYKNGEEDQDHNAEHD------LLIWKNELVRGVIDKAQFGKYGL 1143
            V+   K+P ++F +   +  +  +D + + D      LLI+KN+LVRGV+DKAQFG YG+
Sbjct: 717  VEKNAKIPSSFFKTRMREGKKRTKDTSIKKDEPDEDKLLIYKNDLVRGVVDKAQFGDYGI 776

Query: 1142 VHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDV 966
            VHTVQE YGSN+AG LLSALSRLFT FLQ HGFTCGVDDL++    D +R  +LE  E++
Sbjct: 777  VHTVQEFYGSNTAGFLLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEI 836

Query: 965  GEEVHCDFVKFKPG-QIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQI 789
            G+ VH +F+    G  I P  +QL +EK I S+ E+A   LD KM + L +R +   S +
Sbjct: 837  GDIVHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTS---SGV 893

Query: 788  LKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLP 609
            LK LL++G+LKP  KN IS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLP
Sbjct: 894  LKELLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLP 953

Query: 608  SFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 429
             F  WD + RAGGFI DRFL+ LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNL
Sbjct: 954  CFTSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNL 1013

Query: 428  ESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQK-FQNHREF 252
            E LKVCYD+TVRD+DGSI+QF+YGEDGVDVH+TSF+  F+AL  N+E ++    +   E 
Sbjct: 1014 ECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELDES 1073

Query: 251  NSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERG 72
            + YI++LP+ L+ +A +FI +    +S K   S    H N                    
Sbjct: 1074 SPYINKLPDALKGKAEKFIRD----SSSKQRNSGSMTHTN-------------------- 1109

Query: 71   FLELVKQKYLTSLAESGEPVGVI 3
            FL+L++ KY++SLA+ GEPVGV+
Sbjct: 1110 FLQLMEHKYVSSLAQPGEPVGVL 1132


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
            gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
            isoform 4 [Theobroma cacao]
          Length = 1397

 Score = 1017 bits (2630), Expect = 0.0
 Identities = 536/877 (61%), Positives = 654/877 (74%), Gaps = 23/877 (2%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS I DIQ Q     G   G+SMFFLETILVPPI+FR   KGGDSVMEH  T+LL KVLQ
Sbjct: 31   CSIISDIQQQGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQ 87

Query: 2384 ANIALGNAHTNSAEHSRIIGR-WMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDG 2208
            ANI+LGNA+TN+ + S+ + R WMDLQQS+N+L+DSKTA SQ  ++   GICQ LEKK+G
Sbjct: 88   ANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGICQLLEKKEG 146

Query: 2207 LFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVIN 2028
            +FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  KLR A+IN
Sbjct: 147  MFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIIN 206

Query: 2027 GPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRH 1848
            G + HPGAT+Y D +S+ RLP ++K RI++SRKLPSSR  ++Q GK  ++EFEGKIV RH
Sbjct: 207  GSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRH 266

Query: 1847 LQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQD 1668
            LQDGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQD
Sbjct: 267  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQD 326

Query: 1667 EISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSG 1488
            EISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIV+AVL+T ++TFL+R EF+QLLY SG
Sbjct: 327  EISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSG 386

Query: 1487 VFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPC 1308
            V +    S  G    KV V  SE  +  I+PA+ KP+PLWTGKQVI+++L+HITRG  P 
Sbjct: 387  VSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPF 446

Query: 1307 TVKNQGKVPKNYFASASYKNGEEDQDHNA--------------------EHDLLIWKNEL 1188
            TV    K+P+++F +   KN +  ++ N                     E  +LI++N+L
Sbjct: 447  TVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDL 506

Query: 1187 VRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPN 1008
            VRGVIDKAQF  YGLVHTVQELYGSN+AGILLS  SRLFT+FLQ HGFTCGVDDL+I+ +
Sbjct: 507  VRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMED 566

Query: 1007 FDLQRKEKLEG-EDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMK 831
             D++RK++LE  E    E H +    K       ELQLEIE+ I  D E+A   LD KM 
Sbjct: 567  KDIERKKQLEDCEKKVTEAHYELFGVKVN--SETELQLEIERTIRRDGETALTALDRKMI 624

Query: 830  NKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELE 651
            + L N  +++G  +L  LL++GL+K   +NCIS+MTT+GAKGS VNFQQIS++LGQQELE
Sbjct: 625  SVL-NENSSKG--VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELE 681

Query: 650  GKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKT 471
            GKRVPRMVSGKTLP F PWD+ ARAGGFI+DRFLSGLRPQEYYFHCMAGREGLVDTAVKT
Sbjct: 682  GKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKT 741

Query: 470  SRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNR 291
            SRSGYLQRCLIKNLE LK+ YD+TVRD+DGSIVQF YGEDG+DVH+TSF+  F+AL  N+
Sbjct: 742  SRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQ 801

Query: 290  ETIWQKFQNH-REFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXX 114
            + + +K  +   E +     LP+GL  +A +FI E             +  H+       
Sbjct: 802  DMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE----------EIKKYQHQK------ 845

Query: 113  XXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVI 3
                      K + FL L+K K+L+SLA+ GEPVGV+
Sbjct: 846  ---------IKPKDFLNLLKLKFLSSLAQPGEPVGVL 873


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1017 bits (2630), Expect = 0.0
 Identities = 536/877 (61%), Positives = 654/877 (74%), Gaps = 23/877 (2%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS I DIQ Q     G   G+SMFFLETILVPPI+FR   KGGDSVMEH  T+LL KVLQ
Sbjct: 323  CSIISDIQQQGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQ 379

Query: 2384 ANIALGNAHTNSAEHSRIIGR-WMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDG 2208
            ANI+LGNA+TN+ + S+ + R WMDLQQS+N+L+DSKTA SQ  ++   GICQ LEKK+G
Sbjct: 380  ANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGICQLLEKKEG 438

Query: 2207 LFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVIN 2028
            +FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  KLR A+IN
Sbjct: 439  MFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIIN 498

Query: 2027 GPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRH 1848
            G + HPGAT+Y D +S+ RLP ++K RI++SRKLPSSR  ++Q GK  ++EFEGKIV RH
Sbjct: 499  GSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRH 558

Query: 1847 LQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQD 1668
            LQDGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQD
Sbjct: 559  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQD 618

Query: 1667 EISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSG 1488
            EISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIV+AVL+T ++TFL+R EF+QLLY SG
Sbjct: 619  EISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSG 678

Query: 1487 VFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPC 1308
            V +    S  G    KV V  SE  +  I+PA+ KP+PLWTGKQVI+++L+HITRG  P 
Sbjct: 679  VSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPF 738

Query: 1307 TVKNQGKVPKNYFASASYKNGEEDQDHNA--------------------EHDLLIWKNEL 1188
            TV    K+P+++F +   KN +  ++ N                     E  +LI++N+L
Sbjct: 739  TVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDL 798

Query: 1187 VRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPN 1008
            VRGVIDKAQF  YGLVHTVQELYGSN+AGILLS  SRLFT+FLQ HGFTCGVDDL+I+ +
Sbjct: 799  VRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMED 858

Query: 1007 FDLQRKEKLEG-EDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMK 831
             D++RK++LE  E    E H +    K       ELQLEIE+ I  D E+A   LD KM 
Sbjct: 859  KDIERKKQLEDCEKKVTEAHYELFGVKVN--SETELQLEIERTIRRDGETALTALDRKMI 916

Query: 830  NKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELE 651
            + L N  +++G  +L  LL++GL+K   +NCIS+MTT+GAKGS VNFQQIS++LGQQELE
Sbjct: 917  SVL-NENSSKG--VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELE 973

Query: 650  GKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKT 471
            GKRVPRMVSGKTLP F PWD+ ARAGGFI+DRFLSGLRPQEYYFHCMAGREGLVDTAVKT
Sbjct: 974  GKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKT 1033

Query: 470  SRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNR 291
            SRSGYLQRCLIKNLE LK+ YD+TVRD+DGSIVQF YGEDG+DVH+TSF+  F+AL  N+
Sbjct: 1034 SRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQ 1093

Query: 290  ETIWQKFQNH-REFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXX 114
            + + +K  +   E +     LP+GL  +A +FI E             +  H+       
Sbjct: 1094 DMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE----------EIKKYQHQK------ 1137

Query: 113  XXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVI 3
                      K + FL L+K K+L+SLA+ GEPVGV+
Sbjct: 1138 ---------IKPKDFLNLLKLKFLSSLAQPGEPVGVL 1165


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1014 bits (2622), Expect = 0.0
 Identities = 528/864 (61%), Positives = 635/864 (73%), Gaps = 10/864 (1%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CSYI DIQ Q     G   G SMFFLE I VPPI+FRP  KGGD VMEH  T+LL KVLQ
Sbjct: 296  CSYISDIQDQGF---GKKAGHSMFFLENIFVPPIKFRPPTKGGDDVMEHPQTVLLTKVLQ 352

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
             NI+LG+AH N  + S+++ RWMDLQQS+N+L+D+KT+    Q     GICQ LEKK+G+
Sbjct: 353  GNISLGDAHINKLDPSKVLSRWMDLQQSVNLLFDNKTSG---QGEVAAGICQLLEKKEGI 409

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FAL+L+YPERVTPWN   LR+A++NG
Sbjct: 410  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTPWNVTMLRNAILNG 469

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            P  HPGAT+Y D  ++ +LP N K+   +SRKLPSSR V+   GKI + EFEGKIV RHL
Sbjct: 470  PQSHPGATHYTDQQATVKLPPNGKLLSFISRKLPSSRGVILDHGKISDQEFEGKIVYRHL 529

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            +DGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQDE
Sbjct: 530  KDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDE 589

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISRAEAYNIVNAN QY+ PT GD +R LIQDHIV+A L+T K+TF+T   F QLLY SGV
Sbjct: 590  ISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFITYEVFIQLLYSSGV 649

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
               G GS  G    KV + +SE  +    PA+WKPEPLWTGKQVI+ALL +ITR   P T
Sbjct: 650  SMTGLGSFSGKHGQKVFMTNSEFEMFLFPPAIWKPEPLWTGKQVISALLYYITRDSPPFT 709

Query: 1304 VKNQGKVPKNYFAS--ASYKNGEEDQDHNA-----EHDLLIWKNELVRGVIDKAQFGKYG 1146
            V+   K+P N+F +     K    D+  N      E  LLI+KN+LVRGV+DKAQFG YG
Sbjct: 710  VEKNAKIPSNFFKTQVRDGKRHTRDKSRNKVEPDDEDKLLIYKNDLVRGVVDKAQFGDYG 769

Query: 1145 LVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEG-ED 969
            ++HTVQELYGS  AG LLSALSRLFT FLQ HGFTCGVDDL+I    D++R ++L   E+
Sbjct: 770  IIHTVQELYGSKVAGNLLSALSRLFTTFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEE 829

Query: 968  VGEEVHCDFVKFKPGQ-IGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQ 792
            +G+ VH +F+       I P  LQL IEK I S+ E+A   LD KM + L +R +   S 
Sbjct: 830  IGDIVHREFIGVMNSDIIDPITLQLNIEKKIRSNGEAALTYLDRKMTSNLNSRTS---SG 886

Query: 791  ILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTL 612
            ILK LL+ G+LKP  KNCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTL
Sbjct: 887  ILKDLLSDGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTL 946

Query: 611  PSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 432
            P F PWD + RAGGFI DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KN
Sbjct: 947  PCFAPWDCSPRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKN 1006

Query: 431  LESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREF 252
            LE LKVCYD+TVRD+DGSI+QF+YGEDGVDVH TSF+  F+AL  N+E ++       + 
Sbjct: 1007 LECLKVCYDHTVRDADGSIIQFHYGEDGVDVHHTSFINKFEALSTNKELVYGNCCRQLDR 1066

Query: 251  NS-YISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKER 75
            +S YI++LP+ L+E+A  F  +    +  + N  S                      K  
Sbjct: 1067 SSPYINKLPDALKEKAENFFRD----SLKQRNLGS---------------------LKRA 1101

Query: 74   GFLELVKQKYLTSLAESGEPVGVI 3
             FL+L++ KY++ LA+ GE VGV+
Sbjct: 1102 EFLKLMEHKYVSCLAQPGESVGVL 1125


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score = 1012 bits (2616), Expect = 0.0
 Identities = 518/863 (60%), Positives = 648/863 (75%), Gaps = 9/863 (1%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            C YI DIQ Q     G   G SMFFL+ I VPPI+FRP  KG D V EHA T+LL +VL+
Sbjct: 298  CLYISDIQGQGF---GKKAGHSMFFLDNIYVPPIKFRPPTKGDDKVSEHAQTVLLTRVLE 354

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            +NI+LG AH N ++ S ++ RWMDLQ+S+N+L+D+KTA+ Q  K+   GICQ LEKK+G+
Sbjct: 355  SNISLGQAHLNKSDASVVLRRWMDLQRSVNLLFDNKTASGQ--KDLVTGICQLLEKKEGI 412

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  +LR+A++NG
Sbjct: 413  FRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVELRNAILNG 472

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            P+ HPGAT Y D  S+ +LP +++ R   SRKL SSR V+  +GKI ++EFEGK+V RHL
Sbjct: 473  PETHPGATLYADKTSTLKLPLDRRSRSLTSRKLQSSRGVIMHNGKIHDNEFEGKVVYRHL 532

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            +DGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQDE
Sbjct: 533  KDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDE 592

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISRAEAYNIVNAN QY+ PT GD +R LIQDHIV+A L+T K+TFL+  EF+QLLY SGV
Sbjct: 593  ISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGV 652

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
               G G  PG    K+ + +S+  +    PA++KPEPLWTGKQVI+ALL +IT+G  P T
Sbjct: 653  SMTGMGPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFT 712

Query: 1304 VKNQGKVPKNYFASASYKNGEEDQDHNAEHD------LLIWKNELVRGVIDKAQFGKYGL 1143
            V+   K+P ++F +   +  +  +D + + D      LLI++N+LVRGV+DKAQFG YG+
Sbjct: 713  VEKNAKIPSSFFKTRMREGKKRTKDTSIKKDEPDEDKLLIYRNDLVRGVVDKAQFGDYGI 772

Query: 1142 VHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDV 966
            VHTVQE YGSN+AGILLSALSRLFT FLQ HGFTCGVDDL++    D +R  +LE  E++
Sbjct: 773  VHTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEI 832

Query: 965  GEEVHCDFVKFKPG-QIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQI 789
            G+ VH +F+    G  I P  +QL +EK I S+ E+A   LD KM + L +R +T    +
Sbjct: 833  GDIVHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTST---GV 889

Query: 788  LKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLP 609
            LK LL++G+LKP  KN IS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLP
Sbjct: 890  LKVLLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLP 949

Query: 608  SFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 429
             F  WD + RAGGFI DRFL+ LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNL
Sbjct: 950  CFTSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNL 1009

Query: 428  ESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFN 249
            E LKVCYD+TVRD+DGSI+QF+YGEDGVDVH+TSF+  F+AL  N+E ++       + +
Sbjct: 1010 ECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELDKS 1069

Query: 248  S-YISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERG 72
            S YI++LP+ L+ +A +FI +    +S K   S    H N                    
Sbjct: 1070 SPYINKLPDALKGKAEKFILD----SSSKQRNSGSMTHTN-------------------- 1105

Query: 71   FLELVKQKYLTSLAESGEPVGVI 3
            FL L++ KY++SLA+ GEPVGV+
Sbjct: 1106 FLHLMEHKYVSSLAQPGEPVGVL 1128


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score = 1004 bits (2597), Expect = 0.0
 Identities = 523/862 (60%), Positives = 647/862 (75%), Gaps = 8/862 (0%)
 Frame = -1

Query: 2564 CSYICDIQHQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQ 2385
            CS+I DIQ Q     G   G SMFFLE I VPPI+FRP  K GD+V EH  T+LL KVL+
Sbjct: 290  CSHISDIQDQGF---GKKAGHSMFFLENIFVPPIKFRPPLKAGDNVAEHPQTVLLSKVLE 346

Query: 2384 ANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPDGICQNLEKKDGL 2205
            +NI+L +AH   ++   I+ RW DLQ S+N+L+D+KT+  +SQK+   GICQ L+KK+G+
Sbjct: 347  SNISLADAHRTKSDAYYILRRWQDLQGSVNLLFDNKTS-LRSQKDA-SGICQLLDKKEGI 404

Query: 2204 FRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVING 2025
            FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN+ KL  A++NG
Sbjct: 405  FRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSAKLMDAILNG 464

Query: 2024 PDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHL 1845
            PD HPGA  Y D  S+ RL  +K +R + SR+L SSR V+   GKI EHEFEGK+V RHL
Sbjct: 465  PDTHPGAILYTDKTSTLRLQKDKSLRSSTSRRLQSSRGVIMHHGKIHEHEFEGKVVYRHL 524

Query: 1844 QDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDE 1665
            +DGD+VLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQDE
Sbjct: 525  KDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDE 584

Query: 1664 ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGV 1485
            ISRAEAYNIVNAN QY+ PT GD +R LIQDHIV+A L+T K+TFL+  EF+QLLY SGV
Sbjct: 585  ISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCQEFNQLLYSSGV 644

Query: 1484 FAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCT 1305
               G GS       KV + +SE  +    PA++KPEPLWTGKQVI+ALL +IT+G  P T
Sbjct: 645  SMTGMGSFSCKPGQKVLMSNSESEMFLFPPAIFKPEPLWTGKQVISALLCYITKGRPPFT 704

Query: 1304 VKNQGKVPKNYFASASYKNGEEDQDHNAEHD-----LLIWKNELVRGVIDKAQFGKYGLV 1140
            V+   K+P ++F + + +  +  +D + + D     LLI++N+LVRGV+DKAQFG YG+V
Sbjct: 705  VEKNAKIPSSFFKTQTGEIKKHTKDTSRKKDELEDKLLIYRNDLVRGVVDKAQFGDYGMV 764

Query: 1139 HTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDVG 963
            HTVQE YGSN+AGILLSALSRLFT FLQ HGFTCGVDDL+I    D +R  +LE  E++G
Sbjct: 765  HTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLIKVGKDSERLNQLESCEEIG 824

Query: 962  EEVHCDFVKFKPGQ-IGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQIL 786
            + VH +F+     + I P  +QL +EK I S+ E+A   LD KM + L +R +   S +L
Sbjct: 825  DIVHREFIGVMESENIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTS---SGVL 881

Query: 785  KHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPS 606
            K LL+KG LKP  KN IS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLP 
Sbjct: 882  KELLSKGSLKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPC 941

Query: 605  FPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 426
            FP WD + RAGGFI DRFL+ LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE
Sbjct: 942  FPSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLE 1001

Query: 425  SLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNS 246
            SLKVCYD+TVRDSDGSI+QF+YGEDGVDVH+TSF+  F+AL  N+E I+       + +S
Sbjct: 1002 SLKVCYDHTVRDSDGSIIQFHYGEDGVDVHQTSFINKFEALSINKELIYSNCCRQLDRSS 1061

Query: 245  -YISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGF 69
             YI++LP+ L+ +A  FI +    +S + N+SS                      KE  F
Sbjct: 1062 PYINKLPDALKGKAENFIRDF---SSKQRNSSS---------------------MKEADF 1097

Query: 68   LELVKQKYLTSLAESGEPVGVI 3
            L++++ KY++SLA+ GEPVGV+
Sbjct: 1098 LQVMEHKYVSSLAQPGEPVGVL 1119