BLASTX nr result

ID: Mentha24_contig00002190 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha24_contig00002190
         (319 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU35679.1| hypothetical protein MIMGU_mgv1a015792mg [Mimulus...    71   1e-10
ref|XP_006339242.1| PREDICTED: 50S ribosomal protein 5, chloropl...    60   2e-07
ref|XP_004249337.1| PREDICTED: 50S ribosomal protein 5, chloropl...    60   3e-07
ref|XP_002322592.2| ribosomal protein PsCL18 precursor [Populus ...    56   4e-06

>gb|EYU35679.1| hypothetical protein MIMGU_mgv1a015792mg [Mimulus guttatus]
          Length = 146

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 38/77 (49%), Positives = 47/77 (61%)
 Frame = +3

Query: 84  NPCLKLSQNAIAVHQRSFVGGRIQVPFVLNNGGSLIVRATSDVDGTDSITPESSTPAPDV 263
           +P L+L   ++  H +S  G RI  PFVL N G+LIV+A+ DVDG  S   E  T   D 
Sbjct: 25  HPFLRLCNKSVTFHPKSDFGARIGAPFVLKNRGALIVKASLDVDGAGSTPSEPPTVPSDN 84

Query: 264 KEKSTSVEKLPLQSKIQ 314
           KE S SVE LPL+SK Q
Sbjct: 85  KEVSVSVENLPLESKAQ 101


>ref|XP_006339242.1| PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Solanum
           tuberosum]
          Length = 149

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 29/74 (39%), Positives = 43/74 (58%)
 Frame = +3

Query: 96  KLSQNAIAVHQRSFVGGRIQVPFVLNNGGSLIVRATSDVDGTDSITPESSTPAPDVKEKS 275
           +   N I +  +S+  G IQ PF+    G+LI  A +D+D   S  PE   P+P+  E+S
Sbjct: 35  RFCNNHITLTPKSYANGNIQAPFIFKRRGALIATAAADIDSVGSDNPE---PSPEKNEES 91

Query: 276 TSVEKLPLQSKIQD 317
             VE LPL+SK+Q+
Sbjct: 92  VPVENLPLESKLQE 105


>ref|XP_004249337.1| PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Solanum
           lycopersicum]
          Length = 149

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 29/74 (39%), Positives = 43/74 (58%)
 Frame = +3

Query: 96  KLSQNAIAVHQRSFVGGRIQVPFVLNNGGSLIVRATSDVDGTDSITPESSTPAPDVKEKS 275
           +   N   +  +S+  G IQ PF+    G+LI  A +D+D   S  PE   P+P+ KE+S
Sbjct: 35  RFCNNHFTLTPKSYANGYIQAPFIFQRRGALIATAAADIDSVGSDNPE---PSPEKKEES 91

Query: 276 TSVEKLPLQSKIQD 317
             VE LPL+SK+Q+
Sbjct: 92  VPVENLPLESKLQE 105


>ref|XP_002322592.2| ribosomal protein PsCL18 precursor [Populus trichocarpa]
           gi|550320685|gb|EEF04353.2| ribosomal protein PsCL18
           precursor [Populus trichocarpa]
          Length = 147

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 32/79 (40%), Positives = 49/79 (62%)
 Frame = +3

Query: 81  ANPCLKLSQNAIAVHQRSFVGGRIQVPFVLNNGGSLIVRATSDVDGTDSITPESSTPAPD 260
           A P  +L   A  +  +++ G R Q P   N  G++IVRA+SD+DGT     E+S P  +
Sbjct: 27  ATPVSRLDVKAFELKFKTWNGVRFQNPIRGNRIGAVIVRASSDIDGT--APTETSEPPVE 84

Query: 261 VKEKSTSVEKLPLQSKIQD 317
            KE+  +V+KLPL+SK+Q+
Sbjct: 85  SKEEVVAVDKLPLESKLQE 103


Top