BLASTX nr result
ID: Mentha23_contig00047962
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha23_contig00047962
(387 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624... 176 2e-42
emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera] 154 2e-37
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 149 4e-36
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 149 1e-35
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 149 1e-35
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 149 1e-35
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 148 1e-35
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 148 1e-35
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 147 1e-35
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 149 2e-35
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 146 3e-35
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 146 3e-35
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 146 3e-35
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho... 147 4e-35
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc... 147 4e-35
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 147 9e-35
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 145 2e-34
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 144 2e-34
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 144 2e-34
gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subc... 144 2e-34
>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
Length = 1682
Score = 176 bits (447), Expect = 2e-42
Identities = 77/115 (66%), Positives = 92/115 (80%)
Frame = +2
Query: 41 SFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVYLI 220
S+ GI F+H CPHIH QNGR ERKH+HI D+GLTLLAQA+LP FWW AFHTAV+LI
Sbjct: 59 SYLTQFGIQFRHPCPHIHHQNGRIERKHRHIVDIGLTLLAQANLPLKFWWNAFHTAVFLI 118
Query: 221 NRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
NRLP+PTL N SP+ L+ QVPDY L++FGC CFP LRPYN+ KL FRS++C+F
Sbjct: 119 NRLPTPTLNNISPYQKLFQQVPDYVSLRVFGCACFPYLRPYNRHKLSFRSNRCVF 173
>emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]
Length = 2203
Score = 154 bits (389), Expect(2) = 2e-37
Identities = 64/117 (54%), Positives = 88/117 (75%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L+S Q +GI F+H CPH+H QNG+ ERKH+ I ++GLTLLA++ LPF+FWW AF TA Y
Sbjct: 579 LQSLLQKKGILFRHPCPHVHQQNGKVERKHRSIVEIGLTLLAKSQLPFTFWWHAFSTATY 638
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
L+NRLP+P L +P+ LL+ PD+ +LK FGC C+P LRPY KL+++S++C F
Sbjct: 639 LLNRLPTPVLHCKTPYELLFKSSPDFLFLKTFGCACYPYLRPYKNHKLEYQSTQCTF 695
Score = 27.3 bits (59), Expect(2) = 2e-37
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 1 IQSDWGGEFRPL 36
+Q+DWGGEF PL
Sbjct: 568 LQTDWGGEFHPL 579
Score = 80.1 bits (196), Expect = 3e-13
Identities = 41/116 (35%), Positives = 64/116 (55%)
Frame = +2
Query: 38 ESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVYL 217
E + GI+ S P QNG ERK++ + +M T+L + +LP FW EA +T+ Y+
Sbjct: 1175 EEYCNKHGINHNFSAPRTPQQNGVVERKNRTLQEMARTMLNENNLPKYFWAEAVNTSCYV 1234
Query: 218 INRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
+NR+ +L +P+ L ++ P+ +Y K+FGC CF L N K +S IF
Sbjct: 1235 LNRILLRPILKKTPYELWKNKKPNISYFKVFGCKCFILNTKDNLGKFDAKSDVGIF 1290
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 149 bits (375), Expect(2) = 4e-36
Identities = 67/117 (57%), Positives = 83/117 (70%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF GI SCPH H QNG AERKH+HI ++GL+LL+ A +P FW EAF A Y
Sbjct: 461 LNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEVGLSLLSHAHMPLKFWDEAFQAATY 520
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR+PS + N++P +HQ PDY+ L++FGC C+P LRPYNK KLQFRS +C F
Sbjct: 521 LINRVPSRVIQNTTPLEKFFHQKPDYSSLRVFGCACWPNLRPYNKHKLQFRSKRCAF 577
Score = 28.5 bits (62), Expect(2) = 4e-36
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE+R L FF
Sbjct: 450 MQTDWGGEYRALNSFF 465
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 149 bits (375), Expect(2) = 1e-35
Identities = 68/117 (58%), Positives = 85/117 (72%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF GI SCPH H QNG AERKH+HI ++GL+LL+ AS+P FW EAF A Y
Sbjct: 594 LNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYASMPLKFWDEAFVAATY 653
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR+PS T+ NS+P L++Q PDY+ L++F CTC+P L PYN KLQFRS +C+F
Sbjct: 654 LINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPYNTHKLQFRSKQCVF 710
Score = 26.9 bits (58), Expect(2) = 1e-35
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE++ L FF
Sbjct: 583 MQTDWGGEYQKLNSFF 598
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 149 bits (375), Expect(2) = 1e-35
Identities = 68/117 (58%), Positives = 85/117 (72%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF GI SCPH H QNG AERKH+HI ++GL+LL+ AS+P FW EAF A Y
Sbjct: 594 LNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYASMPLKFWDEAFVAATY 653
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR+PS T+ NS+P L++Q PDY+ L++F CTC+P L PYN KLQFRS +C+F
Sbjct: 654 LINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPYNTHKLQFRSKQCVF 710
Score = 26.9 bits (58), Expect(2) = 1e-35
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE++ L FF
Sbjct: 583 MQTDWGGEYQKLNSFF 598
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 149 bits (375), Expect(2) = 1e-35
Identities = 69/117 (58%), Positives = 85/117 (72%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF GI SCPH H QNG AERKH+HI ++GL+LL+ AS+P FW EAF A Y
Sbjct: 591 LNSFFAKIGIDHHVSCPHTHQQNGSAERKHRHIIEVGLSLLSYASMPLKFWDEAFVAATY 650
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR+PS T+ NS+P L++Q PDY L++FGC C+P LRPYN KLQFRS +C+F
Sbjct: 651 LINRVPSKTIQNSTPLEKLFNQKPDYLSLRVFGCACWPHLRPYNTHKLQFRSKQCVF 707
Score = 26.9 bits (58), Expect(2) = 1e-35
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE++ L FF
Sbjct: 580 MQTDWGGEYQKLNSFF 595
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 148 bits (374), Expect(2) = 1e-35
Identities = 68/117 (58%), Positives = 83/117 (70%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF GI SCPH H QNG AERKH+HI ++GL+LL+ AS+P FW EAF A Y
Sbjct: 618 LNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQAATY 677
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR+PS + N SP L+ Q PDY+ L++FGC C+P LRPYN KLQFRS +C+F
Sbjct: 678 LINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVF 734
Score = 26.9 bits (58), Expect(2) = 1e-35
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE++ L FF
Sbjct: 607 MQTDWGGEYQSLNSFF 622
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 148 bits (374), Expect(2) = 1e-35
Identities = 68/117 (58%), Positives = 83/117 (70%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF GI SCPH H QNG AERKH+HI ++GL+LL+ AS+P FW EAF A Y
Sbjct: 585 LNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQVATY 644
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR+PS + N SP L+ Q PDY+ L++FGC C+P LRPYN KLQFRS +C+F
Sbjct: 645 LINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVF 701
Score = 26.9 bits (58), Expect(2) = 1e-35
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE++ L FF
Sbjct: 574 MQTDWGGEYQSLNSFF 589
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 147 bits (372), Expect(2) = 1e-35
Identities = 70/117 (59%), Positives = 82/117 (70%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF GI SCPH H QNG AERKH+HI +MGL LLA +S+P FW EAF +AVY
Sbjct: 389 LNSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEMGLALLAYSSMPLKFWDEAFTSAVY 448
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR PS L ++P L+ Q PDYN L++FGC C+P LRPYN KLQFRS +C F
Sbjct: 449 LINRTPSRLLKYATPLERLFKQTPDYNLLRVFGCACWPHLRPYNARKLQFRSKQCTF 505
Score = 27.7 bits (60), Expect(2) = 1e-35
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+QSDWGGE+ L FF
Sbjct: 378 MQSDWGGEYEKLNSFF 393
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 149 bits (377), Expect(2) = 2e-35
Identities = 68/114 (59%), Positives = 83/114 (72%)
Frame = +2
Query: 44 FFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVYLIN 223
+ GI + SCP+ H QNG AERKH+HI + G+ LLAQASLPF +W EAF T+VYLIN
Sbjct: 643 YLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQASLPFKYWDEAFRTSVYLIN 702
Query: 224 RLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
RLP+P L N SP +L+HQ P Y+ LK+FGC C+P LRP+N KLQFRS C F
Sbjct: 703 RLPTPVLKNKSPLEVLFHQKPSYSXLKVFGCMCYPNLRPFNHHKLQFRSIPCTF 756
Score = 25.4 bits (54), Expect(2) = 2e-35
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1
Query: 1 IQSDWGGEFR 30
+QSDWGGE+R
Sbjct: 629 VQSDWGGEYR 638
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 146 bits (369), Expect(2) = 3e-35
Identities = 67/117 (57%), Positives = 83/117 (70%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L +FF GI SCPH H QNG AERKH+HI ++GL+LLA AS+P FW EAF A Y
Sbjct: 438 LNTFFNKIGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAY 497
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR P+ L +PF L+H+ PDY+ L++FGC C+P LRPYN KLQFRS +C+F
Sbjct: 498 LINRTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVF 554
Score = 27.7 bits (60), Expect(2) = 3e-35
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE++ L FF
Sbjct: 427 VQTDWGGEYQRLNTFF 442
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 146 bits (369), Expect(2) = 3e-35
Identities = 67/117 (57%), Positives = 85/117 (72%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L+++F+ GI + SCPH QNG ERKH+HI ++GLTLLAQASLP +W +AF TAV+
Sbjct: 452 LKTYFEQNGIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTAVF 511
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINRLP+ L P+ L++ P+Y+ LK+FGC CFP LRPYNK KL FRSS C F
Sbjct: 512 LINRLPTEVLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPCTF 568
Score = 27.7 bits (60), Expect(2) = 3e-35
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 4 QSDWGGEFRPLGIFF 48
Q+DWGGEFR L +F
Sbjct: 442 QTDWGGEFRSLKTYF 456
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 969
Score = 146 bits (369), Expect(2) = 3e-35
Identities = 67/117 (57%), Positives = 83/117 (70%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L +FF GI SCPH H QNG AERKH+HI ++GL+LLA AS+P FW EAF A Y
Sbjct: 438 LNTFFNKIGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAY 497
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR P+ L +PF L+H+ PDY+ L++FGC C+P LRPYN KLQFRS +C+F
Sbjct: 498 LINRTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVF 554
Score = 27.7 bits (60), Expect(2) = 3e-35
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE++ L FF
Sbjct: 427 VQTDWGGEYQRLNTFF 442
>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
protein [Oryza sativa Japonica Group]
Length = 1219
Score = 147 bits (370), Expect(2) = 4e-35
Identities = 68/117 (58%), Positives = 81/117 (69%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF+ GI Q SCPH H QNG ERKH+HI ++GL+LLA AS+P FW EAF A Y
Sbjct: 579 LNSFFKQIGIAHQVSCPHTHQQNGAVERKHRHIVEIGLSLLAHASMPLKFWDEAFLAATY 638
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINRLP + +P L+HQ PDY L+ FGC C+P LRPYN KLQFRS +C+F
Sbjct: 639 LINRLPRKVIDFDTPLARLFHQQPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVF 695
Score = 26.9 bits (58), Expect(2) = 4e-35
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE++ L FF
Sbjct: 568 MQTDWGGEYQKLNSFF 583
>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 147 bits (370), Expect(2) = 4e-35
Identities = 68/117 (58%), Positives = 81/117 (69%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF+ GI Q SCPH H QNG ERKH+HI ++GL+LLA AS+P FW EAF A Y
Sbjct: 468 LNSFFKQIGIAHQVSCPHTHQQNGAVERKHRHIVEIGLSLLAHASMPLKFWDEAFLAATY 527
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINRLP + +P L+HQ PDY L+ FGC C+P LRPYN KLQFRS +C+F
Sbjct: 528 LINRLPRKVIDFDTPLARLFHQQPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVF 584
Score = 26.9 bits (58), Expect(2) = 4e-35
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE++ L FF
Sbjct: 457 MQTDWGGEYQKLNSFF 472
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 147 bits (372), Expect(2) = 9e-35
Identities = 66/117 (56%), Positives = 85/117 (72%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L + F+ GIH Q SCPH H QNG AERKH+HI ++GL LLAQ+S+P +W AF AVY
Sbjct: 591 LNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVY 650
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR PS T+ + +P L PDY+ L++FGC C+P LRPYN+ KLQFRS++C+F
Sbjct: 651 LINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVF 707
Score = 25.0 bits (53), Expect(2) = 9e-35
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 4 QSDWGGEFRPLGIFF 48
QSDWGGE+ L F
Sbjct: 581 QSDWGGEYEKLNAHF 595
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 145 bits (366), Expect(2) = 2e-34
Identities = 70/117 (59%), Positives = 81/117 (69%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF GI SCPH H QNG AERKH+HI ++GL LLA +S+P FW EAF +AVY
Sbjct: 589 LHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKFWGEAFLSAVY 648
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR PS L + SP L PDYN L++FGC C+P LRPYNK KLQFRS+ C F
Sbjct: 649 LINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTF 705
Score = 26.2 bits (56), Expect(2) = 2e-34
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE++ L FF
Sbjct: 578 MQTDWGGEYQKLHSFF 593
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 144 bits (364), Expect(2) = 2e-34
Identities = 66/117 (56%), Positives = 84/117 (71%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L+++F+ GI + SCPH QNG ERKH+HI ++GLTLLAQASLP +W +AF T V+
Sbjct: 698 LKTYFEQNGIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTXVF 757
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINRLP+ L P+ L++ P+Y+ LK+FGC CFP LRPYNK KL FRSS C F
Sbjct: 758 LINRLPTEVLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPCTF 814
Score = 26.9 bits (58), Expect(2) = 2e-34
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 4 QSDWGGEFRPLGIFF 48
Q DWGGEFR L +F
Sbjct: 688 QXDWGGEFRSLKTYF 702
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 144 bits (363), Expect(2) = 2e-34
Identities = 68/117 (58%), Positives = 82/117 (70%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF GI SCPH H QNG AERKH+HI ++GLTLLA +S+P FW EAF AVY
Sbjct: 591 LHSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVY 650
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR P+ L +P L++Q PDY+ L++FGC C+P LRPYN KLQFRS +C F
Sbjct: 651 LINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTF 707
Score = 26.9 bits (58), Expect(2) = 2e-34
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+QSDWGGE+ L FF
Sbjct: 580 MQSDWGGEYEKLHSFF 595
>gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1001
Score = 144 bits (364), Expect(2) = 2e-34
Identities = 67/117 (57%), Positives = 82/117 (70%)
Frame = +2
Query: 35 LESFFQDQGIHFQHSCPHIHTQNGRAERKHQHITDMGLTLLAQASLPFSFWWEAFHTAVY 214
L SFF GI + SCPH H QNG AERKH+HI ++GL LLA AS+P FW EAF TA Y
Sbjct: 330 LNSFFTKIGISHRVSCPHAHQQNGAAERKHRHIVEVGLALLAHASMPLKFWDEAFCTATY 389
Query: 215 LINRLPSPTLLNSSPFFLLYHQVPDYNYLKLFGCTCFPLLRPYNKSKLQFRSSKCIF 385
LINR P+ T+ +P L+HQ P+Y L+ FGC C+P LRPYN KL FRS++C+F
Sbjct: 390 LINRTPAKTINFDTPLERLFHQKPEYASLRTFGCACWPNLRPYNSKKLVFRSTQCVF 446
Score = 26.6 bits (57), Expect(2) = 2e-34
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 1 IQSDWGGEFRPLGIFF 48
+Q+DWGGE+ L FF
Sbjct: 319 MQTDWGGEYEKLNSFF 334