BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha23_contig00043236
         (616 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10550.1|NCAP_SYNV RecName: Full=Nucleoprotein; Short=NP; Alt...   176   4e-42
ref|NP_042281.2| nucleocapsid protein [Sonchus yellow net virus]      176   4e-42
ref|YP_052843.1| N [Maize fine streak virus] gi|49487509|gb|AAT6...    76   7e-12
gb|AAK13531.1| nucleoprotein [orchid fleck virus]                      57   4e-06
gb|AGQ21972.1| nucleocapsid protein [Citrus necrotic spot virus]       57   6e-06
gb|AGN91968.1| nucleocapsid protein [Citrus leprosis virus nucle...    57   6e-06
gb|AAK09390.1| nucleoprotein [orchid fleck virus] gi|13161261|gb...    57   6e-06
ref|YP_001294924.1| nucleocapsid protein [Orchid fleck virus] gi...    57   6e-06
gb|AAK13529.1| nucleoprotein [orchid fleck virus]                      56   7e-06
gb|AAK09392.1| nucleoprotein [orchid fleck virus]                      56   7e-06
gb|AAK13528.1| nucleoprotein [orchid fleck virus]                      56   7e-06
gb|AAK13532.1| nucleoprotein [orchid fleck virus]                      56   7e-06
gb|AAK09391.1| nucleoprotein [orchid fleck virus] gi|13161269|gb...    56   1e-05

>sp|P10550.1|NCAP_SYNV RecName: Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
           protein; Short=Protein N gi|335136|gb|AAA47895.1|
           nucleocapsid protein [Sonchus yellow net virus]
           gi|484031|gb|AAA50380.1| nucleocapsid protein [Sonchus
           yellow net virus] gi|225723|prf||1311418A nucleocapsid
           protein
          Length = 475

 Score =  176 bits (447), Expect = 4e-42
 Identities = 91/194 (46%), Positives = 124/194 (63%), Gaps = 8/194 (4%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L P+ +L+WLR+SGSE A+DEA+ IM+  DNGMI +G   ERLWKYAR LD GYFN++Q+
Sbjct: 281 LPPSQVLSWLRVSGSEMAIDEAFMIMNTLDNGMIDNGHNAERLWKYARCLDQGYFNRLQS 340

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
            ++ EL+A LAYIEI++GIS   GY SPLNI+AIANN  V+ +G+MKA+ FI+CKN  ++
Sbjct: 341 SYSAELIAMLAYIEINMGISTEVGYNSPLNIYAIANNKAVKEVGRMKADVFIQCKNSVVS 400

Query: 361 ERADASVVDKMYAARSGK--RQATETYTDNMDMETETTKFTRKSPAEEGGASKRIKRAPR 534
              DASV+DK+YAA   K  R          + E E       +P+ +  +       P+
Sbjct: 401 LTQDASVIDKVYAAAQQKHIRSEEAARPSEQNKEDEVVAMDTDAPSRKRRSDALTTEKPK 460

Query: 535 ------INLDNVPD 558
                 I L N+PD
Sbjct: 461 KALPAIIKLPNIPD 474


>ref|NP_042281.2| nucleocapsid protein [Sonchus yellow net virus]
          Length = 475

 Score =  176 bits (447), Expect = 4e-42
 Identities = 91/194 (46%), Positives = 124/194 (63%), Gaps = 8/194 (4%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L P+ +L+WLR+SGSE A+DEA+ IM+  DNGMI +G   ERLWKYAR LD GYFN++Q+
Sbjct: 281 LPPSQVLSWLRVSGSEMAIDEAFMIMNTLDNGMIDNGHNAERLWKYARCLDQGYFNRLQS 340

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
            ++ EL+A LAYIEI++GIS   GY SPLNI+AIANN  V+ +G+MKA+ FI+CKN  ++
Sbjct: 341 SYSAELIAMLAYIEINMGISTEVGYNSPLNIYAIANNKAVKEVGRMKADVFIQCKNSVVS 400

Query: 361 ERADASVVDKMYAARSGK--RQATETYTDNMDMETETTKFTRKSPAEEGGASKRIKRAPR 534
              DASV+DK+YAA   K  R          + E E       +P+ +  +       P+
Sbjct: 401 LTQDASVIDKVYAAAQQKHIRSEEAARPSEQNKEDEVVAMDTDAPSRKRRSDALTTEKPK 460

Query: 535 ------INLDNVPD 558
                 I L N+PD
Sbjct: 461 KALPAIIKLPNIPD 474


>ref|YP_052843.1| N [Maize fine streak virus] gi|49487509|gb|AAT66750.1| N [Maize
           fine streak virus]
          Length = 462

 Score = 76.3 bits (186), Expect = 7e-12
 Identities = 42/135 (31%), Positives = 73/135 (54%)
 Frame = +1

Query: 13  LILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQTVHAT 192
           L LT+L +  ++ +V E   IM+ YD     D  +++ LWKYARV+D G+F K+Q     
Sbjct: 290 LFLTFLDVDETKESVKEICRIMTTYDAPSQTDRASRDFLWKYARVIDEGFFLKLQNKKNK 349

Query: 193 ELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIAERAD 372
           E +  LA I   +G+  +  YA P N+  + N   +RA  +  A  F+    ++  ++  
Sbjct: 350 EFLYGLALIHEKMGLVRSVSYAKPTNMAILQNQDGLRADAEEYANLFVFLYKKATGQKEG 409

Query: 373 ASVVDKMYAARSGKR 417
           AS +D++ +  +G+R
Sbjct: 410 ASPMDQLRSQLAGER 424


>gb|AAK13531.1| nucleoprotein [orchid fleck virus]
          Length = 219

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 37/130 (28%), Positives = 59/130 (45%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L+P  +LTWL  +     +     I ++YD    AD     R+W+Y+R LDPG+F  +Q 
Sbjct: 47  LTPGQLLTWLHDNQVSRPLSVIADINTRYDVSNGAD-----RIWRYSRGLDPGFFIALQQ 101

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
                L+A +A+I +  G      Y+ P    ++ N   + A     A  F+E  N    
Sbjct: 102 SKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSG 161

Query: 361 ERADASVVDK 390
             A+A  V +
Sbjct: 162 SSANAGPVSR 171


>gb|AGQ21972.1| nucleocapsid protein [Citrus necrotic spot virus]
          Length = 450

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 36/130 (27%), Positives = 61/130 (46%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L+P  +LTWL  +     +     I ++YD   +++G   +R W+Y+R LDPG+F  +Q 
Sbjct: 278 LTPGQLLTWLHDNQVSRPLSVIADINTRYD---VSNGS--DRFWRYSRGLDPGFFIALQQ 332

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
                L+A +A+I +  G      Y+ P    ++ N   + A     A  F+E  N    
Sbjct: 333 SKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSG 392

Query: 361 ERADASVVDK 390
             A+A  V +
Sbjct: 393 SSANAGPVSR 402


>gb|AGN91968.1| nucleocapsid protein [Citrus leprosis virus nuclear type]
          Length = 450

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 36/130 (27%), Positives = 61/130 (46%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L+P  +LTWL  +     +     I ++YD   +++G   +R W+Y+R LDPG+F  +Q 
Sbjct: 278 LTPGQLLTWLHDNQVSRPLSVIADINTRYD---VSNGS--DRFWRYSRGLDPGFFIALQQ 332

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
                L+A +A+I +  G      Y+ P    ++ N   + A     A  F+E  N    
Sbjct: 333 SKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSG 392

Query: 361 ERADASVVDK 390
             A+A  V +
Sbjct: 393 SSANAGPVSR 402


>gb|AAK09390.1| nucleoprotein [orchid fleck virus] gi|13161261|gb|AAK13527.1|
           nucleoprotein [orchid fleck virus]
          Length = 219

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 36/130 (27%), Positives = 61/130 (46%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L+P  +LTWL  +     +     I ++YD   +++G   +R W+Y+R LDPG+F  +Q 
Sbjct: 47  LTPGQLLTWLHDNQVSRPLSVIADINTRYD---VSNGS--DRFWRYSRGLDPGFFIALQQ 101

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
                L+A +A+I +  G      Y+ P    ++ N   + A     A  F+E  N    
Sbjct: 102 SKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSG 161

Query: 361 ERADASVVDK 390
             A+A  V +
Sbjct: 162 SSANAGPVSR 171


>ref|YP_001294924.1| nucleocapsid protein [Orchid fleck virus]
           gi|94384803|dbj|BAE93579.1| nucleocapsid protein [Orchid
           fleck virus]
          Length = 450

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 36/130 (27%), Positives = 61/130 (46%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L+P  +LTWL  +     +     I ++YD   +++G   +R W+Y+R LDPG+F  +Q 
Sbjct: 278 LTPGQLLTWLHDNQVSRPLSVIADINTRYD---VSNGS--DRFWRYSRGLDPGFFIALQQ 332

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
                L+A +A+I +  G      Y+ P    ++ N   + A     A  F+E  N    
Sbjct: 333 SKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSG 392

Query: 361 ERADASVVDK 390
             A+A  V +
Sbjct: 393 SSANAGPVSR 402


>gb|AAK13529.1| nucleoprotein [orchid fleck virus]
          Length = 219

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 37/130 (28%), Positives = 58/130 (44%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L+P  +LTWL  +     +     I ++YD    AD     R W+Y+R LDPG+F  +Q 
Sbjct: 47  LTPGQLLTWLHDNQVSRPLSVIADINTRYDVSNGAD-----RFWRYSRGLDPGFFIALQQ 101

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
                L+A +A+I +  G      Y+ P    ++ N   + A     A  F+E  N    
Sbjct: 102 SKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSG 161

Query: 361 ERADASVVDK 390
             A+A  V +
Sbjct: 162 SSANAGPVSR 171


>gb|AAK09392.1| nucleoprotein [orchid fleck virus]
          Length = 219

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 37/130 (28%), Positives = 58/130 (44%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L+P  +LTWL  +     +     I ++YD    AD     R W+Y+R LDPG+F  +Q 
Sbjct: 47  LTPGQLLTWLHDNQVSRPLSVIADINTRYDVSNGAD-----RFWRYSRGLDPGFFIALQQ 101

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
                L+A +A+I +  G      Y+ P    ++ N   + A     A  F+E  N    
Sbjct: 102 SKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSG 161

Query: 361 ERADASVVDK 390
             A+A  V +
Sbjct: 162 SSANAGPVSR 171


>gb|AAK13528.1| nucleoprotein [orchid fleck virus]
          Length = 219

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 37/130 (28%), Positives = 58/130 (44%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L+P  +LTWL  +     +     I ++YD    AD     R W+Y+R LDPG+F  +Q 
Sbjct: 47  LTPGQLLTWLHDNQVSRPLSVIADINTRYDVSNGAD-----RFWRYSRGLDPGFFIALQQ 101

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
                L+A +A+I +  G      Y+ P    ++ N   + A     A  F+E  N    
Sbjct: 102 SKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSG 161

Query: 361 ERADASVVDK 390
             A+A  V +
Sbjct: 162 SSANAGPVSR 171


>gb|AAK13532.1| nucleoprotein [orchid fleck virus]
          Length = 219

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 37/130 (28%), Positives = 58/130 (44%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L+P  +LTWL  +     +     I ++YD    AD     R W+Y+R LDPG+F  +Q 
Sbjct: 47  LTPGQLLTWLHDNQVSRPLSVIADINTRYDVSNGAD-----RFWRYSRGLDPGFFIALQQ 101

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
                L+A +A+I +  G      Y+ P    ++ N   + A     A  F+E  N    
Sbjct: 102 SKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSG 161

Query: 361 ERADASVVDK 390
             A+A  V +
Sbjct: 162 SSANAGPVSR 171


>gb|AAK09391.1| nucleoprotein [orchid fleck virus] gi|13161269|gb|AAK13530.1|
           nucleoprotein [orchid fleck virus]
          Length = 219

 Score = 55.8 bits (133), Expect = 1e-05
 Identities = 37/130 (28%), Positives = 58/130 (44%)
 Frame = +1

Query: 1   LSPALILTWLRMSGSENAVDEAYTIMSKYDNGMIADGQTKERLWKYARVLDPGYFNKMQT 180
           L+P  +LTWL  +     +     I ++YD    AD     R W+Y+R LDPG+F  +Q 
Sbjct: 47  LTPGQLLTWLHDNQVSRPLGVIADINTRYDVSNGAD-----RFWRYSRGLDPGFFIALQQ 101

Query: 181 VHATELMATLAYIEIHLGISNAEGYASPLNIFAIANNHHVRAIGKMKAEAFIECKNQSIA 360
                L+A +A+I +  G      Y+ P    ++ N   + A     A  F+E  N    
Sbjct: 102 SKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPGLAAEADKFATEFVEAYNGLSG 161

Query: 361 ERADASVVDK 390
             A+A  V +
Sbjct: 162 SSANAGPVSR 171