BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha23_contig00039898
         (992 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]   580   e-163
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus...   552   e-155
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   506   e-141
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...   506   e-141
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    506   e-141
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     505   e-141
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   504   e-140
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     504   e-140
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   503   e-140
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   501   e-139
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    501   e-139
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   500   e-139
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   499   e-139
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   496   e-138
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]       489   e-136
ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   488   e-135
ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   488   e-135
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   484   e-134
ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago trunc...   483   e-134
gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L...   480   e-133

>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
          Length = 1195

 Score =  580 bits (1494), Expect = e-163
 Identities = 283/330 (85%), Positives = 304/330 (92%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQ+TTMF+RVRDIL++GFYLCGR+YSFLAFSSNQLRDRSAWFFAED+ T+V  IK WMGK
Sbjct: 482  PQRTTMFKRVRDILYQGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRKTSVVCIKTWMGK 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            FTNRNVAKCAARMGQCFSSTYATVEVP +QAN K  DVERN Y+FSDGIGMIS+DLAKEV
Sbjct: 542  FTNRNVAKCAARMGQCFSSTYATVEVPSAQANSK-SDVERNGYIFSDGIGMISADLAKEV 600

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKLQ+ T LPCA+QIRYAGYKGVVACWPA  NG RLQLR SM+KFDS+HTTLEICSWTR
Sbjct: 601  AEKLQLRTKLPCAYQIRYAGYKGVVACWPAENNGHRLQLRPSMKKFDSDHTTLEICSWTR 660

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQIVTLLS+LEV D+ FWRMQELM++RLD ILEDPDMAFDVLT SC+D GNTA
Sbjct: 661  FQPGFLNRQIVTLLSSLEVCDENFWRMQELMIARLDGILEDPDMAFDVLTASCSDQGNTA 720

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            AMMLAAGFR   EPHLRGML SIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC
Sbjct: 721  AMMLAAGFRSHTEPHLRGMLMSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 780

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS PSLEDCFA HGSEFS+TKK+LEVI
Sbjct: 781  FIQVSKPSLEDCFANHGSEFSETKKDLEVI 810


>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
          Length = 1196

 Score =  552 bits (1422), Expect = e-155
 Identities = 266/330 (80%), Positives = 294/330 (89%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQ+TT+F+R++DIL  GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK   V +IKNWMG+
Sbjct: 483  PQRTTIFKRIKDILHSGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKDIGVANIKNWMGR 542

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            FTNRNVAKCAARMGQCFSSTYATVEVP  Q N KL D+ERN+YVFSDGIGM+S+DLA EV
Sbjct: 543  FTNRNVAKCAARMGQCFSSTYATVEVPSKQVNSKLPDIERNDYVFSDGIGMLSADLAMEV 602

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKLQ+ TNLP A+QIRYAGYKGVVACWPA  +G RL LR SM+KFDSNHT LEICSWTR
Sbjct: 603  AEKLQLTTNLPSAYQIRYAGYKGVVACWPAQSDGFRLSLRKSMKKFDSNHTVLEICSWTR 662

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQI+TLLSALEV D+ FWRMQE M+SRL+ +LED D AFDVLT SCTD GNTA
Sbjct: 663  FQPGFLNRQIITLLSALEVGDEIFWRMQETMISRLNQMLEDTDTAFDVLTSSCTDQGNTA 722

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P  EPHLRGML+SIRV+QLGDLRE++RIFV SGRWLMGCLDELGVLE+GQC
Sbjct: 723  AIMLSAGFKPQTEPHLRGMLTSIRVAQLGDLRERARIFVPSGRWLMGCLDELGVLEHGQC 782

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS PSLEDCF KHGSEFS  KK LEVI
Sbjct: 783  FIQVSNPSLEDCFVKHGSEFSGAKKKLEVI 812


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  506 bits (1304), Expect = e-141
 Identities = 245/330 (74%), Positives = 281/330 (85%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+
Sbjct: 482  PQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGR 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA EV
Sbjct: 542  FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEV 601

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTR
Sbjct: 602  AEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTR 661

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQIVTLLS+L+V+D  FW MQ+ M++ LD +L D D+AFDV+T SC + GNTA
Sbjct: 662  FQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGNTA 721

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQC
Sbjct: 722  ALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQC 781

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS+PSLE+CF KHGS+FS  KKNL+V+
Sbjct: 782  FIQVSSPSLENCFVKHGSKFSDIKKNLQVV 811


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score =  506 bits (1303), Expect = e-141
 Identities = 244/330 (73%), Positives = 283/330 (85%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQ+T +FQRV+ I+ KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V SI NWMGK
Sbjct: 482  PQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMGK 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            F NRNVAKCAARMGQCFSSTYATVEV PS+ N +L D+ERN YVFSDGIGM+++DL+ EV
Sbjct: 542  FGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIEV 601

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            A KLQ+  N PCA+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSWTR
Sbjct: 602  AAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTR 661

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
             QPGFLNRQI+TLLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GNTA
Sbjct: 662  LQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTA 721

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P +EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDELG LE GQC
Sbjct: 722  AIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQC 781

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS+PSLE CF KHG EFS+ KKNL+V+
Sbjct: 782  FIQVSSPSLETCFVKHGPEFSEIKKNLQVV 811


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  506 bits (1302), Expect = e-141
 Identities = 244/330 (73%), Positives = 281/330 (85%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+
Sbjct: 482  PQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGR 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA EV
Sbjct: 542  FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEV 601

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL ++ N P A+QIRYAGYKGVVACWP   +G  L LR SM+KFDSNHT LEICSWTR
Sbjct: 602  AEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTR 661

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTA
Sbjct: 662  FQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTA 721

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQC
Sbjct: 722  ALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQC 781

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS+PSLE+CF KHG +FS  KKNL+V+
Sbjct: 782  FIQVSSPSLENCFVKHGPKFSDIKKNLQVV 811


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  505 bits (1301), Expect = e-141
 Identities = 245/330 (74%), Positives = 280/330 (84%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+
Sbjct: 482  PQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGR 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA EV
Sbjct: 542  FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEV 601

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTR
Sbjct: 602  AEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTR 661

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTA
Sbjct: 662  FQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTA 721

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQC
Sbjct: 722  ALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQC 781

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS+PSLE+CF KHG +FS  KKNL+V+
Sbjct: 782  FIQVSSPSLENCFVKHGPKFSDIKKNLQVV 811


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score =  504 bits (1298), Expect = e-140
 Identities = 244/330 (73%), Positives = 282/330 (85%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQ+T +FQRV+ IL KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V +I NWMGK
Sbjct: 483  PQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWMGK 542

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            F NRNVAKCAARMGQCFSSTYATVEV PS+ N +L D+ERN YVFSDGIGM+S+DL+ EV
Sbjct: 543  FGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSIEV 602

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            A KLQ+  N PCA+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSWTR
Sbjct: 603  AAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTR 662

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
             QPGFLNRQI+TLLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GNTA
Sbjct: 663  LQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTA 722

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P +EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDEL  LE GQC
Sbjct: 723  AIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQGQC 782

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS+PSLE CF KHG +FS+ KKNL+VI
Sbjct: 783  FIQVSSPSLETCFVKHGPKFSEIKKNLQVI 812


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  504 bits (1297), Expect = e-140
 Identities = 244/330 (73%), Positives = 280/330 (84%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+
Sbjct: 482  PQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGR 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA EV
Sbjct: 542  FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAVEV 601

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTR
Sbjct: 602  AEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTR 661

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTA
Sbjct: 662  FQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTA 721

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQC
Sbjct: 722  AIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQC 781

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS+PSLE+CF KHG +FS  KKNL+V+
Sbjct: 782  FIQVSSPSLENCFIKHGPKFSDIKKNLQVV 811


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  503 bits (1296), Expect = e-140
 Identities = 243/329 (73%), Positives = 279/329 (84%)
 Frame = +2

Query: 5    QKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKF 184
            QKT +F+RV+ IL  GFYLCGRKYSFLAFSSNQLRDRSAWFFAED  T+V  I+NWMGKF
Sbjct: 483  QKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKF 542

Query: 185  TNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVA 364
            TNRN+AKCAARMGQCFSSTYATVEVP ++A   L D+ERNNY+FSDGIGMI+ DLAKEVA
Sbjct: 543  TNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVA 602

Query: 365  EKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRF 544
            EKL++  N PCA+QIRYAG KGVVACWPA  +G RL LR SM KF SNHTTLEICSWTRF
Sbjct: 603  EKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRF 662

Query: 545  QPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAA 724
            QPGFLNRQI+TLLS L+V D+ FW+MQ +MVS+L+ +  D D+AFDV+T SC + GNTAA
Sbjct: 663  QPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAA 722

Query: 725  MMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF 904
            +ML+AGF P  EPHL GML+ IR +QL  LREK+RIFV SGRWLMGCLDELGVLE+GQCF
Sbjct: 723  IMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCF 782

Query: 905  IQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            IQVS PSLE CF KHGS FS++KK L+V+
Sbjct: 783  IQVSNPSLESCFWKHGSRFSESKKKLQVV 811


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  501 bits (1291), Expect = e-139
 Identities = 240/330 (72%), Positives = 280/330 (84%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQKT +F+RVR IL +GFYLCGR+YSFLAFSSNQLRDRSAWFFAED++  V +IK+WMGK
Sbjct: 482  PQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGK 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            FTN+N+AKCAARMGQCFSSTYAT+EVPP + N  L D++RN Y FSDGIGMI+ DLA+EV
Sbjct: 542  FTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREV 601

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL+   + PCA+QIRYAG KGVVACWP   +G RL LR+SM KF SNHT LEICSWTR
Sbjct: 602  AEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTR 661

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQI+TLLSAL V D  FW+MQELMVS+L+ +L D D+AFDVLT SC + GN A
Sbjct: 662  FQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVA 721

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P  EPHLRGML+ +R +QL  LREK+RIFV SGRWLMGCLDELGVLE GQC
Sbjct: 722  AIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQC 781

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS   LE+CF KHGS+FS+TKKNL+V+
Sbjct: 782  FIQVSNSYLENCFVKHGSKFSETKKNLQVV 811


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  501 bits (1291), Expect = e-139
 Identities = 243/330 (73%), Positives = 279/330 (84%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+
Sbjct: 482  PQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGR 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            F+NRNVAKCAARMGQCFSSTYATVEVP  + N +L D+ERN YVFSDGIGMIS+DLA EV
Sbjct: 542  FSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAIEV 601

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTR
Sbjct: 602  AEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTR 661

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTA
Sbjct: 662  FQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTA 721

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQC
Sbjct: 722  AIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQC 781

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS+PSLE+CF KHG +FS  K+NL+V+
Sbjct: 782  FIQVSSPSLENCFVKHGPKFSDIKQNLQVV 811


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score =  500 bits (1288), Expect = e-139
 Identities = 241/330 (73%), Positives = 278/330 (84%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQKT ++ R+R IL  GF+LCGRKYSFLAFSSNQLRDRSAWFFAEDK+ ++  IKNWMG+
Sbjct: 482  PQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGR 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            FTNRNVAKCAARMGQCFSSTYATVEVP +Q NH+L D+ERN YVFSDGIG I+ DLA EV
Sbjct: 542  FTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEV 601

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL++  + P A+QIRY G KGVVACWP+  +G RL LR SM KF S+HTTLEICSWTR
Sbjct: 602  AEKLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTR 661

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
             QPGFLNRQI+TLLSAL V D+ FW MQE MVS+L  +L D D+AFDVLT SC + GN+A
Sbjct: 662  LQPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSA 721

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P  EPHLRGML+ I+ +QL  LREK+RIFV SGRWLMGCLDELGVLE GQC
Sbjct: 722  AIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQC 781

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            F+QVSTPSLE+CFAKHGS F +T KNL+VI
Sbjct: 782  FVQVSTPSLENCFAKHGSRFDQTDKNLQVI 811


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  499 bits (1285), Expect = e-139
 Identities = 242/330 (73%), Positives = 279/330 (84%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+
Sbjct: 482  PQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGR 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA EV
Sbjct: 542  FSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLALEV 601

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL +  N P A+QIRYAG KGVVACWP   +G  L LR SM+KFDSNHT LEICSWTR
Sbjct: 602  AEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTR 661

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S L+ +L D D+AFDV+T SC + GNTA
Sbjct: 662  FQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGNTA 721

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQC
Sbjct: 722  AIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQC 781

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS+PSLE+CF KHG +FS  KKNL+V+
Sbjct: 782  FIQVSSPSLENCFIKHGPKFSDIKKNLQVV 811


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  496 bits (1276), Expect = e-138
 Identities = 234/330 (70%), Positives = 279/330 (84%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQKT +F+RVR IL +GFYLCGR+YSFLAFS+NQLRD+SAWFF+E+++ +V  +K+WMGK
Sbjct: 485  PQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGK 544

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            FTNRN+AKCAARMGQCFSSTYAT+EVPP + N  L D+ERN YVFSDGIG+I+ DLA+EV
Sbjct: 545  FTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREV 604

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL++  + PCA+QIRYAG KGVVACWP   +G RL LR SM KF SNHTTLEICSWTR
Sbjct: 605  AEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTR 664

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQI+TLLS L V D  FW+MQE MVS+L+ +  + D+AFDVLT SC D GN A
Sbjct: 665  FQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVA 724

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+AGF+P  EPHLRGML+ +R +QL DLREK+RIFV SGRWLMGCLDELG+LE GQC
Sbjct: 725  AIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQC 784

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            FIQVS  SLE CF KHG++FS+ +KNL+VI
Sbjct: 785  FIQVSNSSLEKCFMKHGAKFSEAEKNLQVI 814


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score =  489 bits (1258), Expect = e-136
 Identities = 236/329 (71%), Positives = 275/329 (83%)
 Frame = +2

Query: 5    QKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKF 184
            QKT +F+RV+ +L  GFYLCG++YSFLAFSSNQLRDRSAWFFAED   TV+ IK WMG+F
Sbjct: 479  QKTKVFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKWMGRF 538

Query: 185  TNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVA 364
             NRN+AKCAARMGQCFSSTYATVEVP ++ N  L+++ERN YVFSDGIGMI+ DLAKEVA
Sbjct: 539  NNRNIAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEVA 598

Query: 365  EKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRF 544
            EKL++  N P A+QIRYAG KGVVACWP   +G RL LR SM KFDS HT LEICSWTRF
Sbjct: 599  EKLKLDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICSWTRF 658

Query: 545  QPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAA 724
            QPGFLNRQIVTLLS L V D+ FW+MQE M+ +L+ +L D D+AF+VLT SC + GN  A
Sbjct: 659  QPGFLNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVGA 718

Query: 725  MMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF 904
            +ML+AGF+P +EPHL+GML+ IR +QL  LREK+RIFV  GRWLMGCLDELGVLE GQCF
Sbjct: 719  IMLSAGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQCF 778

Query: 905  IQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            IQVSTPSLE+CF+KHGS FS+TK NLEVI
Sbjct: 779  IQVSTPSLENCFSKHGSRFSETKNNLEVI 807


>ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer
            arietinum] gi|502132369|ref|XP_004501326.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X3 [Cicer
            arietinum]
          Length = 1201

 Score =  488 bits (1257), Expect = e-135
 Identities = 239/330 (72%), Positives = 277/330 (83%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQKT +++RV+ IL +GFY CGRKYSFLAFSSNQLRDRSAWFFAED + T D I+NWMGK
Sbjct: 482  PQKTRIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDNNITCDDIRNWMGK 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            F  RNVAKCAARMGQCFSSTYA+VEV  ++ N  L DVERNNYVFSDGIG+I++DLA EV
Sbjct: 542  FNQRNVAKCAARMGQCFSSTYASVEVAANEVNSMLADVERNNYVFSDGIGIITNDLAVEV 601

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL++   +P A+QIRYAG+KGVVACWP   +G RL LR SM KF S HTTLEIC+WTR
Sbjct: 602  AEKLKLD-KVPSAYQIRYAGFKGVVACWPPKGDGIRLSLRPSMNKFQSTHTTLEICAWTR 660

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQI+TLLSAL+V D  FW MQE+M+SRL+ +L D D+AFDVLT SC +HGN A
Sbjct: 661  FQPGFLNRQIITLLSALDVSDGIFWDMQEVMISRLNQMLVDADVAFDVLTKSCAEHGNAA 720

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+ GF P  EPHLRGML+SIR +QL  LREKSRIFV SGRWLMG LDELGVLE GQC
Sbjct: 721  AIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQC 780

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            F+QVSTPSLE+CF+KHGS FS+T K L+V+
Sbjct: 781  FVQVSTPSLENCFSKHGSRFSET-KTLQVV 809


>ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer
            arietinum]
          Length = 1247

 Score =  488 bits (1257), Expect = e-135
 Identities = 239/330 (72%), Positives = 277/330 (83%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQKT +++RV+ IL +GFY CGRKYSFLAFSSNQLRDRSAWFFAED + T D I+NWMGK
Sbjct: 528  PQKTRIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDNNITCDDIRNWMGK 587

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            F  RNVAKCAARMGQCFSSTYA+VEV  ++ N  L DVERNNYVFSDGIG+I++DLA EV
Sbjct: 588  FNQRNVAKCAARMGQCFSSTYASVEVAANEVNSMLADVERNNYVFSDGIGIITNDLAVEV 647

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL++   +P A+QIRYAG+KGVVACWP   +G RL LR SM KF S HTTLEIC+WTR
Sbjct: 648  AEKLKLD-KVPSAYQIRYAGFKGVVACWPPKGDGIRLSLRPSMNKFQSTHTTLEICAWTR 706

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQI+TLLSAL+V D  FW MQE+M+SRL+ +L D D+AFDVLT SC +HGN A
Sbjct: 707  FQPGFLNRQIITLLSALDVSDGIFWDMQEVMISRLNQMLVDADVAFDVLTKSCAEHGNAA 766

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+ GF P  EPHLRGML+SIR +QL  LREKSRIFV SGRWLMG LDELGVLE GQC
Sbjct: 767  AIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQC 826

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            F+QVSTPSLE+CF+KHGS FS+T K L+V+
Sbjct: 827  FVQVSTPSLENCFSKHGSRFSET-KTLQVV 855


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score =  484 bits (1247), Expect = e-134
 Identities = 237/329 (72%), Positives = 271/329 (82%)
 Frame = +2

Query: 5    QKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKF 184
            QKT +F+RVR IL  GFYLCGRKYSFLAFS+NQLRD SAWFFAED  T+V  I  WMGKF
Sbjct: 483  QKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKF 542

Query: 185  TNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVA 364
            TNRN+AKCAARMGQCFSSTYATVEVP ++ N  L D+ERN YVFSDGIG I+ DLAKEVA
Sbjct: 543  TNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVA 602

Query: 365  EKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRF 544
            +KL++  N PCA+QIRYAG KGVVACWP   +G RL LR SM KF S+HTTLEICSWTRF
Sbjct: 603  QKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRF 662

Query: 545  QPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAA 724
            QPGFLNRQI+TLLS   V D+ FW MQ  MVS+L+ IL D D+AF+VLT SC++ GN AA
Sbjct: 663  QPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAA 722

Query: 725  MMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF 904
            +ML+AGF+P  EPHLRG+L+ +R SQL  LREK+RIFV SGRWLMG LDELGVLE GQCF
Sbjct: 723  IMLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCF 782

Query: 905  IQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            IQVS PS+E+CF KHGS F++TKKN EVI
Sbjct: 783  IQVSNPSVENCFLKHGSRFAETKKNFEVI 811


>ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1188

 Score =  483 bits (1244), Expect = e-134
 Identities = 234/323 (72%), Positives = 272/323 (84%)
 Frame = +2

Query: 5    QKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKF 184
            QKT +++RV+ IL  GFY CGRKYSFLAFSSNQLRDRSAWFFAEDK  T D I+NWMG+F
Sbjct: 470  QKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNWMGRF 529

Query: 185  TNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVA 364
              +NVAKCAARMGQCFSSTYA+VEVP ++ N  L DVERNNYVFSDGIG+I++DLA EVA
Sbjct: 530  NQKNVAKCAARMGQCFSSTYASVEVPANEVNSMLPDVERNNYVFSDGIGIITTDLAVEVA 589

Query: 365  EKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRF 544
            EKL++    P A+QIRYAG+KGVVACWPA  +G +L LR SM KF S HTTLEIC+WTRF
Sbjct: 590  EKLKLD-KAPSAYQIRYAGFKGVVACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAWTRF 648

Query: 545  QPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAA 724
            QPGFLNRQI+TLLSAL+V D+ FW+MQE M+S L+ +L D D+A+DVLT SC +HGN AA
Sbjct: 649  QPGFLNRQIITLLSALDVPDEIFWKMQEGMISSLNQMLVDRDVAYDVLTKSCAEHGNAAA 708

Query: 725  MMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF 904
            +ML+ GF P  EPHLRGML+SIR +QL  LREKSRIFV SGRWLMG LDELGVLE GQCF
Sbjct: 709  IMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCF 768

Query: 905  IQVSTPSLEDCFAKHGSEFSKTK 973
            +QVSTPSLE+CF+KHGS FS+TK
Sbjct: 769  VQVSTPSLENCFSKHGSRFSETK 791


>gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
          Length = 1201

 Score =  480 bits (1236), Expect = e-133
 Identities = 233/330 (70%), Positives = 279/330 (84%)
 Frame = +2

Query: 2    PQKTTMFQRVRDILFKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 181
            PQKT +++RV+ IL +GF+ C RKY+FLAFSSNQLRDRSAWFFAED     D I++WMG+
Sbjct: 482  PQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDGIRDWMGR 541

Query: 182  FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 361
            F+NRNVAKCAARMGQCFSSTYATVEVP ++ N  L D+ERN YVFSDGIG+I+ DLA EV
Sbjct: 542  FSNRNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIERNKYVFSDGIGIITPDLAGEV 601

Query: 362  AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 541
            AEKL++    P A+QIRYAG+KGVVA WPA  +G RL LRTSM KF S+HTTLEIC+WTR
Sbjct: 602  AEKLKLDI-APSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTLEICAWTR 660

Query: 542  FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 721
            FQPGFLNRQI+TLLSALEV D+ FW+MQE+M+S+L+ +L + D+AFDVLT SC +HGN A
Sbjct: 661  FQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGNAA 720

Query: 722  AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 901
            A+ML+ GF P  EPHL+GML+SIR +QL  LREKSRIFV SGRWLMG LDELGVLE GQC
Sbjct: 721  AIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQC 780

Query: 902  FIQVSTPSLEDCFAKHGSEFSKTKKNLEVI 991
            F+QVSTPSLE+CF+KHGS FS+T K+L+V+
Sbjct: 781  FVQVSTPSLENCFSKHGSRFSET-KSLQVV 809