BLASTX nr result
ID: Mentha23_contig00036431
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha23_contig00036431
(410 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Orig... 256 2e-66
ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) ... 255 5e-66
ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum in... 255 5e-66
ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans... 254 7e-66
ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) ... 253 1e-65
ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) ... 253 1e-65
ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygro... 251 6e-65
gb|AGF30344.1| RNA polymerase beta'', partial (chloroplast) [Lam... 251 1e-64
gb|AGF30327.1| RNA polymerase beta'', partial (chloroplast) [Lam... 251 1e-64
gb|AGF30322.1| RNA polymerase beta'', partial (chloroplast) [Lam... 251 1e-64
gb|AGF30307.1| RNA polymerase beta'', partial (chloroplast) [Lam... 251 1e-64
gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Bart... 250 2e-64
ref|YP_008964857.1| RNA polymerase beta'' subunit (chloroplast) ... 250 2e-64
gb|AGF30359.1| RNA polymerase beta'', partial (chloroplast) [Gle... 249 2e-64
gb|AGF30294.1| RNA polymerase beta'', partial (chloroplast) [Lam... 249 2e-64
gb|AGF30293.1| RNA polymerase beta'', partial (chloroplast) [Lam... 249 2e-64
ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) ... 249 4e-64
gb|AGF30313.1| RNA polymerase beta'', partial (chloroplast) [Lam... 248 5e-64
gb|ADO13866.1| RNA polymerase beta subunit [Paracryphia alticola] 248 5e-64
sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymeras... 248 6e-64
>gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Origanum vulgare
subsp. vulgare]
Length = 1397
Score = 256 bits (654), Expect = 2e-66
Identities = 124/136 (91%), Positives = 124/136 (91%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 255 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 314
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDLLHPT
Sbjct: 315 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLLHPT 374
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSINLY
Sbjct: 375 RTRHGHPAFLCSINLY 390
>ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
gi|438687594|emb|CCP47120.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688278|emb|CCP47209.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688402|emb|CCP47298.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
Length = 1395
Score = 255 bits (651), Expect = 5e-66
Identities = 123/136 (90%), Positives = 124/136 (91%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 255 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 314
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 315 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 374
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSINLY
Sbjct: 375 RTRHGHPAFLCSINLY 390
>ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum indicum]
gi|378747302|gb|AEO92696.2| RNA polymerase beta''
subunit (chloroplast) [Sesamum indicum]
gi|496538591|gb|AGL45326.1| RpoC2 (chloroplast) [Sesamum
indicum]
Length = 1390
Score = 255 bits (651), Expect = 5e-66
Identities = 123/136 (90%), Positives = 124/136 (91%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 255 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 314
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 315 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 374
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSINLY
Sbjct: 375 RTRHGHPAFLCSINLY 390
>ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans]
gi|558697185|gb|AHA84940.1| RNA polymerase beta''
subunit [Ajuga reptans]
Length = 1377
Score = 254 bits (650), Expect = 7e-66
Identities = 122/136 (89%), Positives = 124/136 (91%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMGTRCIATRNQD+GIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 251 DDIYMGTRCIATRNQDVGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 310
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 311 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 370
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSINLY
Sbjct: 371 RTRHGHPAFLCSINLY 386
>ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) [Lindenbergia
philippensis] gi|557136853|emb|CDI43908.1| RNA
polymerase beta'' subunit (chloroplast) [Lindenbergia
philippensis]
Length = 1368
Score = 253 bits (647), Expect = 1e-65
Identities = 122/136 (89%), Positives = 124/136 (91%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIY+GTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 251 DDIYIGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 310
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 311 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 370
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSINLY
Sbjct: 371 RTRHGHPAFLCSINLY 386
>ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza]
gi|401879732|gb|AFQ30919.1| RNA polymerase beta
subunit-2 (chloroplast) [Salvia miltiorrhiza]
gi|573461941|emb|CCQ71610.1| RNA polymerase beta''
subunit (chloroplast) [Salvia miltiorrhiza]
Length = 1395
Score = 253 bits (647), Expect = 1e-65
Identities = 122/136 (89%), Positives = 123/136 (90%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPI IRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 255 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPITIRTPFTCRSASWICRLCYGRSPTHGD 314
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 315 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 374
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSINLY
Sbjct: 375 RTRHGHPAFLCSINLY 390
>ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygrometrica]
gi|340549397|gb|AEK53219.1| RNA polymerase beta''
subunit (chloroplast) [Boea hygrometrica]
Length = 1381
Score = 251 bits (642), Expect = 6e-65
Identities = 121/136 (88%), Positives = 123/136 (90%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMGTRCIAT NQDIGIGL+NRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 255 DDIYMGTRCIATINQDIGIGLINRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 314
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 315 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 374
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSINLY
Sbjct: 375 RTRHGHPAFLCSINLY 390
>gb|AGF30344.1| RNA polymerase beta'', partial (chloroplast) [Lamium macrodon]
Length = 225
Score = 251 bits (640), Expect = 1e-64
Identities = 121/136 (88%), Positives = 122/136 (89%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMG RCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 71 DDIYMGARCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 130
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 131 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 190
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPA LCSINLY
Sbjct: 191 RTRHGHPALLCSINLY 206
>gb|AGF30327.1| RNA polymerase beta'', partial (chloroplast) [Lamium garganicum
subsp. corsicum] gi|451042164|gb|AGF30328.1| RNA
polymerase beta'', partial (chloroplast) [Lamium
garganicum subsp. corsicum] gi|451042166|gb|AGF30329.1|
RNA polymerase beta'', partial (chloroplast) [Lamium
garganicum subsp. garganicum]
gi|451042168|gb|AGF30330.1| RNA polymerase beta'',
partial (chloroplast) [Lamium garganicum subsp.
laevigatum] gi|451042170|gb|AGF30331.1| RNA polymerase
beta'', partial (chloroplast) [Lamium garganicum subsp.
laevigatum] gi|451042172|gb|AGF30332.1| RNA polymerase
beta'', partial (chloroplast) [Lamium garganicum subsp.
striatum] gi|451042174|gb|AGF30333.1| RNA polymerase
beta'', partial (chloroplast) [Lamium garganicum subsp.
striatum] gi|451042192|gb|AGF30342.1| RNA polymerase
beta'', partial (chloroplast) [Lamium lycium]
gi|451042194|gb|AGF30343.1| RNA polymerase beta'',
partial (chloroplast) [Lamium lycium]
gi|550600634|gb|AGX85173.1| RpoC2, partial (chloroplast)
[Lamium garganicum subsp. laevigatum]
Length = 225
Score = 251 bits (640), Expect = 1e-64
Identities = 121/136 (88%), Positives = 122/136 (89%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMG RCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 71 DDIYMGARCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 130
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 131 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 190
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPA LCSINLY
Sbjct: 191 RTRHGHPALLCSINLY 206
>gb|AGF30322.1| RNA polymerase beta'', partial (chloroplast) [Lamium galeobdolon
subsp. galeobdolon]
Length = 225
Score = 251 bits (640), Expect = 1e-64
Identities = 121/136 (88%), Positives = 122/136 (89%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMG RCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 71 DDIYMGARCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 130
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 131 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 190
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPA LCSINLY
Sbjct: 191 RTRHGHPALLCSINLY 206
>gb|AGF30307.1| RNA polymerase beta'', partial (chloroplast) [Lamium confertum]
gi|451042124|gb|AGF30308.1| RNA polymerase beta'',
partial (chloroplast) [Lamium confertum]
gi|451042126|gb|AGF30309.1| RNA polymerase beta'',
partial (chloroplast) [Lamium confertum]
gi|451042128|gb|AGF30310.1| RNA polymerase beta'',
partial (chloroplast) [Lamium confertum]
gi|451042130|gb|AGF30311.1| RNA polymerase beta'',
partial (chloroplast) [Lamium coutinhoi]
gi|451042132|gb|AGF30312.1| RNA polymerase beta'',
partial (chloroplast) [Lamium coutinhoi]
gi|451042138|gb|AGF30315.1| RNA polymerase beta'',
partial (chloroplast) [Lamium galactophyllum]
gi|451042140|gb|AGF30316.1| RNA polymerase beta'',
partial (chloroplast) [Lamium galeobdolon subsp.
argentatum] gi|451042142|gb|AGF30317.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
argentatum] gi|451042144|gb|AGF30318.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
argentatum] gi|451042146|gb|AGF30319.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
flavidum] gi|451042148|gb|AGF30320.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
flavidum] gi|451042150|gb|AGF30321.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
flavidum] gi|451042154|gb|AGF30323.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
galeobdolon] gi|451042156|gb|AGF30324.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
montanum] gi|451042158|gb|AGF30325.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
montanum] gi|451042160|gb|AGF30326.1| RNA polymerase
beta'', partial (chloroplast) [Lamium galeobdolon subsp.
montanum] gi|451042176|gb|AGF30334.1| RNA polymerase
beta'', partial (chloroplast) [Lamium garganicum var.
armenum] gi|451042182|gb|AGF30337.1| RNA polymerase
beta'', partial (chloroplast) [Lamium x holsaticum]
gi|451042184|gb|AGF30338.1| RNA polymerase beta'',
partial (chloroplast) [Lamium x holsaticum]
gi|451042198|gb|AGF30345.1| RNA polymerase beta'',
partial (chloroplast) [Lamium macrodon]
gi|451042200|gb|AGF30346.1| RNA polymerase beta'',
partial (chloroplast) [Lamium maculatum]
gi|451042202|gb|AGF30347.1| RNA polymerase beta'',
partial (chloroplast) [Lamium maculatum]
gi|451042204|gb|AGF30348.1| RNA polymerase beta'',
partial (chloroplast) [Lamium maculatum]
gi|451042206|gb|AGF30349.1| RNA polymerase beta'',
partial (chloroplast) [Lamium moschatum]
gi|451042208|gb|AGF30350.1| RNA polymerase beta'',
partial (chloroplast) [Lamium moschatum var. rhodium]
gi|451042210|gb|AGF30351.1| RNA polymerase beta'',
partial (chloroplast) [Lamium orvala]
gi|451042212|gb|AGF30352.1| RNA polymerase beta'',
partial (chloroplast) [Lamium orvala]
gi|451042214|gb|AGF30353.1| RNA polymerase beta'',
partial (chloroplast) [Lamium purpureum]
gi|451042216|gb|AGF30354.1| RNA polymerase beta'',
partial (chloroplast) [Lamium purpureum]
gi|451042218|gb|AGF30355.1| RNA polymerase beta'',
partial (chloroplast) [Lamium purpureum]
gi|550600624|gb|AGX85168.1| RpoC2, partial (chloroplast)
[Lamium confertum] gi|550600626|gb|AGX85169.1| RpoC2,
partial (chloroplast) [Lamium confertum]
gi|550600630|gb|AGX85171.1| RpoC2, partial (chloroplast)
[Lamium galeobdolon subsp. flavidum]
gi|550600632|gb|AGX85172.1| RpoC2, partial (chloroplast)
[Lamium galeobdolon subsp. galeobdolon]
gi|550600640|gb|AGX85176.1| RpoC2, partial (chloroplast)
[Lamium maculatum] gi|550600642|gb|AGX85177.1| RpoC2,
partial (chloroplast) [Lamium maculatum]
gi|550600644|gb|AGX85178.1| RpoC2, partial (chloroplast)
[Lamium maculatum] gi|550600646|gb|AGX85179.1| RpoC2,
partial (chloroplast) [Lamium moschatum]
gi|550600648|gb|AGX85180.1| RpoC2, partial (chloroplast)
[Lamium orvala] gi|550600650|gb|AGX85181.1| RpoC2,
partial (chloroplast) [Lamium orvala]
gi|550600652|gb|AGX85182.1| RpoC2, partial (chloroplast)
[Lamium orvala]
Length = 225
Score = 251 bits (640), Expect = 1e-64
Identities = 121/136 (88%), Positives = 122/136 (89%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMG RCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 71 DDIYMGARCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 130
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 131 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 190
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPA LCSINLY
Sbjct: 191 RTRHGHPALLCSINLY 206
>gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Bartsia inaequalis]
Length = 1384
Score = 250 bits (638), Expect = 2e-64
Identities = 119/136 (87%), Positives = 123/136 (90%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYM TRCIATRNQDIGIGL+NRF+TFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 255 DDIYMSTRCIATRNQDIGIGLINRFLTFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 314
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKI+FNEDL+HPT
Sbjct: 315 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIQFNEDLVHPT 374
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSINLY
Sbjct: 375 RTRHGHPAFLCSINLY 390
>ref|YP_008964857.1| RNA polymerase beta'' subunit (chloroplast) [Schwalbea americana]
gi|560176690|emb|CDJ38609.1| RNA polymerase beta''
subunit (chloroplast) [Schwalbea americana]
Length = 1382
Score = 250 bits (638), Expect = 2e-64
Identities = 120/136 (88%), Positives = 123/136 (90%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIY+GTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 251 DDIYIGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 310
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AE VRAPSNGKIKFNEDL+HPT
Sbjct: 311 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGAAEQVRAPSNGKIKFNEDLVHPT 370
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSINLY
Sbjct: 371 RTRHGHPAFLCSINLY 386
>gb|AGF30359.1| RNA polymerase beta'', partial (chloroplast) [Glechoma hederacea]
Length = 225
Score = 249 bits (637), Expect = 2e-64
Identities = 120/136 (88%), Positives = 122/136 (89%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTC SASWICRLCYGRSPTHGD
Sbjct: 71 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCXSASWICRLCYGRSPTHGD 130
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVR+P NGKIKFNEDL+HPT
Sbjct: 131 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRSPXNGKIKFNEDLVHPT 190
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSINLY
Sbjct: 191 RTRHGHPAFLCSINLY 206
>gb|AGF30294.1| RNA polymerase beta'', partial (chloroplast) [Lamium album]
gi|451042098|gb|AGF30295.1| RNA polymerase beta'',
partial (chloroplast) [Lamium album]
gi|550600616|gb|AGX85164.1| RpoC2, partial (chloroplast)
[Lamium album]
Length = 225
Score = 249 bits (637), Expect = 2e-64
Identities = 120/136 (88%), Positives = 123/136 (90%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 71 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 130
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR A+HVRAPSNGKIKFNE+L+HPT
Sbjct: 131 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAKHVRAPSNGKIKFNEELVHPT 190
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPA LCSINLY
Sbjct: 191 RTRHGHPALLCSINLY 206
>gb|AGF30293.1| RNA polymerase beta'', partial (chloroplast) [Lamium album]
gi|451042100|gb|AGF30296.1| RNA polymerase beta'',
partial (chloroplast) [Lamium barbatum]
gi|451042102|gb|AGF30297.1| RNA polymerase beta'',
partial (chloroplast) [Lamium barbatum]
gi|451042104|gb|AGF30298.1| RNA polymerase beta'',
partial (chloroplast) [Lamium barbatum]
gi|451042106|gb|AGF30299.1| RNA polymerase beta'',
partial (chloroplast) [Lamium barbatum]
gi|451042220|gb|AGF30356.1| RNA polymerase beta'',
partial (chloroplast) [Lamium tomentosum]
gi|451042222|gb|AGF30357.1| RNA polymerase beta'',
partial (chloroplast) [Lamium tomentosum]
gi|451042224|gb|AGF30358.1| RNA polymerase beta'',
partial (chloroplast) [Lamium tomentosum]
gi|550600618|gb|AGX85165.1| RpoC2, partial (chloroplast)
[Lamium barbatum]
Length = 225
Score = 249 bits (637), Expect = 2e-64
Identities = 120/136 (88%), Positives = 123/136 (90%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 71 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 130
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR A+HVRAPSNGKIKFNE+L+HPT
Sbjct: 131 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAKHVRAPSNGKIKFNEELVHPT 190
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPA LCSINLY
Sbjct: 191 RTRHGHPALLCSINLY 206
>ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) [Capsicum annuum]
gi|401065922|gb|AFP90766.1| RNA polymerase beta''
subunit (chloroplast) [Capsicum annuum]
Length = 1392
Score = 249 bits (635), Expect = 4e-64
Identities = 119/136 (87%), Positives = 123/136 (90%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMG+RCIATRNQDIGIGLVNRFITFRAQPI+IRTPFTCRS SWICRLCYGRSPTHGD
Sbjct: 255 DDIYMGSRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGD 314
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 315 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 374
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSI+LY
Sbjct: 375 RTRHGHPAFLCSIDLY 390
>gb|AGF30313.1| RNA polymerase beta'', partial (chloroplast) [Lamium flexuosum]
gi|451042136|gb|AGF30314.1| RNA polymerase beta'',
partial (chloroplast) [Lamium flexuosum]
gi|550600628|gb|AGX85170.1| RpoC2, partial (chloroplast)
[Lamium flexuosum]
Length = 225
Score = 248 bits (634), Expect = 5e-64
Identities = 120/136 (88%), Positives = 121/136 (88%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMG RCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 71 DDIYMGARCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 130
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAP NGKIKFNEDL+HPT
Sbjct: 131 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHPT 190
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPA LCSINLY
Sbjct: 191 RTRHGHPALLCSINLY 206
>gb|ADO13866.1| RNA polymerase beta subunit [Paracryphia alticola]
Length = 606
Score = 248 bits (634), Expect = 5e-64
Identities = 118/136 (86%), Positives = 123/136 (90%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMG RC+ATRNQD+GIGLVNRFITFRAQPI+IRTPFTCRSASWICRLCYGRSPTHGD
Sbjct: 241 DDIYMGPRCVATRNQDLGIGLVNRFITFRAQPISIRTPFTCRSASWICRLCYGRSPTHGD 300
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 301 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 360
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSI+LY
Sbjct: 361 RTRHGHPAFLCSIDLY 376
>sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|239977080|sp|P38550.2|RPOC2_TOBAC RecName:
Full=DNA-directed RNA polymerase subunit beta'';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta''; Short=RNA polymerase subunit
beta'' gi|2924258|emb|CAA77410.1| RNA polymerase beta''
subunit [Nicotiana tabacum] gi|77799548|dbj|BAE46637.1|
RNA polymerase beta'' subunit [Nicotiana sylvestris]
Length = 1392
Score = 248 bits (633), Expect = 6e-64
Identities = 119/136 (87%), Positives = 122/136 (89%)
Frame = +3
Query: 3 DDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRLCYGRSPTHGD 182
DDIYMG RCIATRNQDIGIGLVNRFITFRAQPI+IRTPFTCRS SWICRLCYGRSPTHGD
Sbjct: 255 DDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGD 314
Query: 183 LVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKIKFNEDLLHPT 362
LVELGEAVGIIAGQSIGEPGTQLTLR AEHVRAPSNGKIKFNEDL+HPT
Sbjct: 315 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 374
Query: 363 RTRHGHPAFLCSINLY 410
RTRHGHPAFLCSI+LY
Sbjct: 375 RTRHGHPAFLCSIDLY 390