BLASTX nr result
ID: Mentha23_contig00036045
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha23_contig00036045
(928 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA22288.1| polyprotein [Oryza australiensis] 260 2e-72
ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776... 256 2e-70
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 251 7e-70
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 251 7e-70
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 251 7e-70
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 254 1e-69
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 251 2e-69
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 251 2e-69
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D... 253 3e-69
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc... 247 3e-69
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 246 2e-68
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 248 3e-68
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group] 248 3e-68
emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group] 244 9e-67
gb|ADB85411.1| putative retrotransposon protein [Phyllostachys e... 243 9e-67
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja... 253 6e-65
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc... 253 6e-65
gb|AAL83352.1|AC074282_19 Putative polyprotein [Oryza sativa Jap... 231 5e-64
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc... 250 6e-64
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 234 2e-63
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 260 bits (665), Expect(2) = 2e-72
Identities = 122/181 (67%), Positives = 149/181 (82%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETFSPVA +KSIRI+LAIAAY+DY+ WQMDV+ AFLNG L DVYM
Sbjct: 863 VAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYM 922
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
QP+GF P +CKLQKSIYGLKQASRSWNI FD+ IK F F++++E+ CVY K G
Sbjct: 923 IQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSG 982
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
I+F+++YVDDIL+IGN+I M++SV++ L NSF MKDLGE YILGIRIYRDRSKRL+G
Sbjct: 983 SAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIG 1042
Query: 541 L 543
L
Sbjct: 1043 L 1043
Score = 40.4 bits (93), Expect(2) = 2e-72
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +QSTYIDKVL+ F++ +SKK + M H I L K
Sbjct: 1038 KRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSK 1076
>ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776990, partial [Setaria
italica]
Length = 1686
Score = 256 bits (655), Expect(2) = 2e-70
Identities = 119/181 (65%), Positives = 147/181 (81%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETFSPV +KSIRI+LAIAAY+DY+ WQMDV+ AFLNG L DVYM
Sbjct: 274 VAKGFRQVQGVDYDETFSPVVMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLAKDVYM 333
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
QPEGF VCKLQ+SIYGLKQASRSWNI FD+ +K FDF +++E+ CVY K G
Sbjct: 334 IQPEGFVDPKNAGKVCKLQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSG 393
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
+++F+++YVDDIL+IGNNI M++SV+T L NSF M DLGE YILGI+IYRDRS+RL+G
Sbjct: 394 SSVVFLILYVDDILLIGNNILMLESVKTSLKNSFSMMDLGEAAYILGIKIYRDRSRRLIG 453
Query: 541 L 543
L
Sbjct: 454 L 454
Score = 37.4 bits (85), Expect(2) = 2e-70
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +Q TYIDKVL+ FS+E +KK + M H L K
Sbjct: 449 RRLIGLSQDTYIDKVLKRFSMEEAKKGFLPMSHGRHLSK 487
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 251 bits (642), Expect(2) = 7e-70
Identities = 119/181 (65%), Positives = 148/181 (81%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETFSPVA +KSIRI+LAIAAY+DY+ WQMDV+ AFLNG L+ DVYM
Sbjct: 812 VAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYM 871
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKLQKSIY LKQASRSWNI FD+ +K+ FV+++E+ CVY K G
Sbjct: 872 TQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISG 931
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL+IGN+I M++SV+T L SF MKDLGE YILGIRIYRDRSKRL+G
Sbjct: 932 SALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLIG 991
Query: 541 L 543
L
Sbjct: 992 L 992
Score = 40.4 bits (93), Expect(2) = 7e-70
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +QSTYIDKVL+ F++++SKK + M H I L K
Sbjct: 987 KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGK 1025
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 251 bits (642), Expect(2) = 7e-70
Identities = 119/181 (65%), Positives = 148/181 (81%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETFSPVA +KSIRI+LAIAAY+DY+ WQMDV+ AFLNG L+ DVYM
Sbjct: 725 VAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYM 784
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKLQKSIY LKQASRSWNI FD+ +K+ FV+++E+ CVY K G
Sbjct: 785 TQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISG 844
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL+IGN+I M++SV+T L SF MKDLGE YILGIRIYRDRSKRL+G
Sbjct: 845 SALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLIG 904
Query: 541 L 543
L
Sbjct: 905 L 905
Score = 40.4 bits (93), Expect(2) = 7e-70
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +QSTYIDKVL+ F++++SKK + M H I L K
Sbjct: 900 KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGK 938
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 251 bits (641), Expect(2) = 7e-70
Identities = 117/181 (64%), Positives = 146/181 (80%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+G+ Q GIDYDET+SPVA +KSIRILLA AA+YDY+ WQMDV+ AFLNG LE VYM
Sbjct: 510 VAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYM 569
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQPEGFT VCKL +SIYGLKQASRSWN+ F++AIK FDF+R++E+ CVY K G
Sbjct: 570 TQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSG 629
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
+ F+V+YVDDIL++GN+I ++QSV+TWL + F MKD+GE YILGIRIYRDR +++G
Sbjct: 630 SAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIG 689
Query: 541 L 543
L
Sbjct: 690 L 690
Score = 40.8 bits (94), Expect(2) = 7e-70
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 522 IQKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
+ K++ +Q TYIDKVL F++ +SKK I M H I L K
Sbjct: 684 LNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSK 723
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 254 bits (648), Expect(2) = 1e-69
Identities = 121/181 (66%), Positives = 149/181 (82%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETFS VA +KSIRI+LAIAAY+DY+ WQMDV+ AFLNG+L DVYM
Sbjct: 859 VAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGKLSEDVYM 918
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQPEGF + + VCKLQKSIYGLKQASRSWNI FD+ IK F FV++KE+ CVY K G
Sbjct: 919 TQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFVKNKEEPCVYMKVSG 978
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++ +++YVDDIL+IGN+I M++SV+ L NSF MKDLGE YILGI+IYRDRS+RL+G
Sbjct: 979 STLVILILYVDDILLIGNDIPMLESVKASLKNSFSMKDLGEAAYILGIKIYRDRSRRLIG 1038
Query: 541 L 543
L
Sbjct: 1039 L 1039
Score = 37.4 bits (85), Expect(2) = 1e-69
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSI 629
++++ +QSTYIDKVL F+++N+KK + M H I
Sbjct: 1034 RRLIGLSQSTYIDKVLIRFNMQNTKKGFLPMSHGI 1068
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 251 bits (642), Expect(2) = 2e-69
Identities = 118/181 (65%), Positives = 149/181 (82%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETFSPVA +KSIRI+LAIAAY+DY+ WQM+V+ AFLNG + DVYM
Sbjct: 793 VAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMEVKTAFLNGNHDEDVYM 852
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKLQKSIYGLKQASRSWNI FD+ +K+ F++++E+ CVY K G
Sbjct: 853 TQPKGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELVKALGFLKNEEEPCVYKKISG 912
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL+IGN+I M++SV+T L NSF MKDLGE YILGIRIYRDRSKRL+G
Sbjct: 913 SALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIG 972
Query: 541 L 543
L
Sbjct: 973 L 973
Score = 39.3 bits (90), Expect(2) = 2e-69
Identities = 17/39 (43%), Positives = 29/39 (74%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +QSTYIDK+L+ F++++SKK + M H I L K
Sbjct: 968 KRLIGLSQSTYIDKMLKRFNMQDSKKGFLPMSHGINLGK 1006
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 251 bits (642), Expect(2) = 2e-69
Identities = 118/181 (65%), Positives = 149/181 (82%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETFSPVA +KSIRI+LAIAAY+DY+ WQM+V+ AFLNG + DVYM
Sbjct: 783 VAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMEVKTAFLNGNHDEDVYM 842
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKLQKSIYGLKQASRSWNI FD+ +K+ F++++E+ CVY K G
Sbjct: 843 TQPKGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELVKALGFLKNEEEPCVYKKISG 902
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL+IGN+I M++SV+T L NSF MKDLGE YILGIRIYRDRSKRL+G
Sbjct: 903 SALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIG 962
Query: 541 L 543
L
Sbjct: 963 L 963
Score = 39.3 bits (90), Expect(2) = 2e-69
Identities = 17/39 (43%), Positives = 29/39 (74%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +QSTYIDK+L+ F++++SKK + M H I L K
Sbjct: 958 KRLIGLSQSTYIDKMLKRFNMQDSKKGFLPMSHGINLGK 996
>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
Length = 1303
Score = 253 bits (645), Expect(2) = 3e-69
Identities = 118/181 (65%), Positives = 144/181 (79%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF+Q G+DYDETFSPVAKIKSIRI+LAIAA++DY+ WQMDV+ AFLNG+L DVYM
Sbjct: 846 VAKGFTQTPGVDYDETFSPVAKIKSIRIMLAIAAFHDYEIWQMDVKTAFLNGKLTEDVYM 905
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
QPEGF PN VCKL++SIYGLKQASRSWN+CF + +K F F RS+++ CVY K G
Sbjct: 906 NQPEGFVDAKYPNKVCKLERSIYGLKQASRSWNLCFHEKVKEFGFSRSEDESCVYVKASG 965
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
+ F+V+YVDDIL++GN+I +Q V+ WL F MKDLGE YILGIRI RDR KRL+G
Sbjct: 966 SIVTFLVLYVDDILLMGNDIPTLQDVKAWLGKCFAMKDLGEAAYILGIRILRDRKKRLIG 1025
Query: 541 L 543
L
Sbjct: 1026 L 1026
Score = 37.0 bits (84), Expect(2) = 3e-69
Identities = 16/39 (41%), Positives = 28/39 (71%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +Q TY++KVL+ FS+ENSKK + + + KL K
Sbjct: 1021 KRLIGLSQGTYLEKVLKRFSMENSKKGELPIQSNAKLSK 1059
>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 810
Score = 247 bits (631), Expect(2) = 3e-69
Identities = 117/181 (64%), Positives = 147/181 (81%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETFSPVA +KSIRI+L IAAY+DY+ WQMDV+ A LNG L+ DVYM
Sbjct: 569 VAKGFRQIQGVDYDETFSPVAMLKSIRIVLTIAAYFDYEIWQMDVKTALLNGNLDEDVYM 628
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKLQKSIYGLK+ASRSWNI FDK +K+ FV+++E+ CVY K G
Sbjct: 629 TQPKGFVDPQSAKKICKLQKSIYGLKKASRSWNIRFDKVVKALGFVKNEEEPCVYKKISG 688
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVD+IL+IGN+I M++SV+T L NSF MKDLGE ILGIRIYRDRSKRL+G
Sbjct: 689 SALVFLILYVDEILLIGNDIPMLESVKTSLKNSFLMKDLGEPTCILGIRIYRDRSKRLIG 748
Query: 541 L 543
L
Sbjct: 749 L 749
Score = 42.4 bits (98), Expect(2) = 3e-69
Identities = 19/39 (48%), Positives = 29/39 (74%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +QSTYIDKVL+ F+++NSKK + M H I L K
Sbjct: 744 KRLIGLSQSTYIDKVLKRFNMQNSKKGFLPMSHGINLGK 782
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 246 bits (629), Expect(2) = 2e-68
Identities = 117/181 (64%), Positives = 146/181 (80%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETFSPVA +K I I+LAIAAY+DY+ WQM V+ AFLNG L+ DVYM
Sbjct: 734 VAKGFRQIQGVDYDETFSPVAMLKFIWIVLAIAAYFDYEIWQMYVKTAFLNGNLDEDVYM 793
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKL +SIYGLKQASRSWNI FD+ +K+ FVR++E+ CVY K G
Sbjct: 794 TQPKGFDDPQSAKKICKLHQSIYGLKQASRSWNIRFDEVVKALGFVRNEEEPCVYKKISG 853
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL+IGN+I M++SV+T L NSF MKDLGE YILGIRIYRDRSKRL+G
Sbjct: 854 SALVFLILYVDDILLIGNDISMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIG 913
Query: 541 L 543
L
Sbjct: 914 L 914
Score = 40.4 bits (93), Expect(2) = 2e-68
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +QSTYIDKVL+ F++++SKK + M H I L K
Sbjct: 909 KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGK 947
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 248 bits (632), Expect(2) = 3e-68
Identities = 118/181 (65%), Positives = 145/181 (80%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETF PVA +KSIRI+LAIAAY+DY+ WQMDV+ AFLNG L+ DVYM
Sbjct: 786 VAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYM 845
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKLQKSIYGLKQASRSWNI FD+ +K+ FV+++E CVY K G
Sbjct: 846 TQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKALGFVKNEEVPCVYKKISG 905
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL+IGN+I M++SV L NSF MKDLGE YILGIRIYRD SKRL+G
Sbjct: 906 SALVFLILYVDDILLIGNDIPMLESVNISLKNSFSMKDLGEAAYILGIRIYRDGSKRLIG 965
Query: 541 L 543
L
Sbjct: 966 L 966
Score = 38.9 bits (89), Expect(2) = 3e-68
Identities = 17/39 (43%), Positives = 29/39 (74%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ ++STYIDKVL+ F++++SKK + M H I L K
Sbjct: 961 KRLIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNK 999
>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 248 bits (632), Expect(2) = 3e-68
Identities = 118/181 (65%), Positives = 145/181 (80%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETF PVA +KSIRI+LAIAAY+DY+ WQMDV+ AFLNG L+ DVYM
Sbjct: 728 VAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYM 787
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKLQKSIYGLKQASRSWNI FD+ +K+ FV+++E CVY K G
Sbjct: 788 TQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKALGFVKNEEVPCVYKKISG 847
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL+IGN+I M++SV L NSF MKDLGE YILGIRIYRD SKRL+G
Sbjct: 848 SALVFLILYVDDILLIGNDIPMLESVNISLKNSFSMKDLGEAAYILGIRIYRDGSKRLIG 907
Query: 541 L 543
L
Sbjct: 908 L 908
Score = 38.9 bits (89), Expect(2) = 3e-68
Identities = 17/39 (43%), Positives = 29/39 (74%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ ++STYIDKVL+ F++++SKK + M H I L K
Sbjct: 903 KRLIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNK 941
>emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]
Length = 746
Score = 244 bits (622), Expect(2) = 9e-67
Identities = 116/178 (65%), Positives = 143/178 (80%)
Frame = +1
Query: 10 GFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYMTQP 189
GF Q +G+DYDETFSPV +KSIRI+LAIAAY+DY+ WQMDV+ AFLNG L+ DVYMTQP
Sbjct: 475 GFRQIQGVDYDETFSPVTMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQP 534
Query: 190 EGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKGENI 369
+GF +CKLQKSIYGLKQASRSWNI FD+ +K+ FV+++E+ CVY K +
Sbjct: 535 KGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKASGFVKNEEEPCVYKKINRSAL 594
Query: 370 IFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLGL 543
F+++YVDDIL+IGN+I M++S +T L NSF MKDLGE YILGIRIYRDRSKRL+GL
Sbjct: 595 GFLILYVDDILLIGNDIPMLKSAKTSLKNSFSMKDLGEATYILGIRIYRDRSKRLIGL 652
Score = 37.7 bits (86), Expect(2) = 9e-67
Identities = 16/39 (41%), Positives = 29/39 (74%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +QSTYI+K+L+ F++++SKK + M H I L K
Sbjct: 647 KRLIGLSQSTYINKMLKRFNMQDSKKGFLSMSHGINLGK 685
>gb|ADB85411.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 566
Score = 243 bits (621), Expect(2) = 9e-67
Identities = 114/181 (62%), Positives = 144/181 (79%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q + +DYDE FSPVA ++SI I+LAIAAY+DY+ WQMDV+ AFLNG L DVYM
Sbjct: 324 VAKGFKQIQCVDYDEAFSPVAMLESIPIILAIAAYFDYEIWQMDVKMAFLNGNLSEDVYM 383
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQPE F VCKL KSIYGLKQASRSWNI FD+ +K FDF++++E+ CVY K G
Sbjct: 384 TQPESFVDLKEARKVCKLNKSIYGLKQASRSWNIRFDEVVKGFDFIKNEEEPCVYKKVSG 443
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL++ N+I M++SV+T L NSF +KDLG+ YILGIRIYRDRSKRL+G
Sbjct: 444 SKLVFLILYVDDILLVENDIPMLESVKTSLRNSFSIKDLGDASYILGIRIYRDRSKRLIG 503
Query: 541 L 543
L
Sbjct: 504 L 504
Score = 38.1 bits (87), Expect(2) = 9e-67
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +Q YIDKVL+ F++++SK +LM H I L K
Sbjct: 499 KRLIGLSQDMYIDKVLKRFNMQDSKNGFLLMAHGINLSK 537
>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 253 bits (647), Expect = 6e-65
Identities = 120/181 (66%), Positives = 150/181 (82%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G++YDETFSPVA +KSIRI+LAIAAY+DY+ WQMDV+ AFL+G L+ DVYM
Sbjct: 417 VAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYM 476
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKLQKSIYGLKQASRSWNI FD+ IK+ FV+++E+ CVY K G
Sbjct: 477 TQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVIKALGFVKNEEEPCVYKKING 536
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL+IGN+I M++SV+T L NSF MKDLGE YILGIRIYRDRSKRL+G
Sbjct: 537 SALMFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIG 596
Query: 541 L 543
L
Sbjct: 597 L 597
>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 253 bits (647), Expect = 6e-65
Identities = 120/181 (66%), Positives = 150/181 (82%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G++YDETFSPVA +KSIRI+LAIAAY+DY+ WQMDV+ AFL+G L+ DVYM
Sbjct: 372 VAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYM 431
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKLQKSIYGLKQASRSWNI FD+ IK+ FV+++E+ CVY K G
Sbjct: 432 TQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVIKALGFVKNEEEPCVYKKING 491
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL+IGN+I M++SV+T L NSF MKDLGE YILGIRIYRDRSKRL+G
Sbjct: 492 SALMFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIG 551
Query: 541 L 543
L
Sbjct: 552 L 552
>gb|AAL83352.1|AC074282_19 Putative polyprotein [Oryza sativa Japonica Group]
gi|22711524|gb|AAN04499.1| Putative polyprotein [Oryza
sativa Japonica Group] gi|31429946|gb|AAP51930.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 309
Score = 231 bits (590), Expect(2) = 5e-64
Identities = 110/181 (60%), Positives = 145/181 (80%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETFSPV +KSI+I+LAIAAY++Y+ W ++V+ AFLNG+L DVYM
Sbjct: 50 VAKGFRQIQGVDYDETFSPVTMLKSIQIVLAIAAYFNYEIWLVNVKIAFLNGDLNEDVYM 109
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKL KSIYGLKQAS SW+I FD+ +K+ FV+++E+ VY K G
Sbjct: 110 TQPKGFGDPQSAKKICKLHKSIYGLKQASWSWDIRFDEVVKALGFVKNEEEPRVYKKISG 169
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL+IGN+I M++SV+T L NSF +KDLGE YILGIRIYRDRSKRL+G
Sbjct: 170 NALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSVKDLGEAAYILGIRIYRDRSKRLIG 229
Query: 541 L 543
L
Sbjct: 230 L 230
Score = 40.8 bits (94), Expect(2) = 5e-64
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +3
Query: 525 QKVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLK 641
++++ +QSTYIDKVL+ F++++SKK + M H I L K
Sbjct: 225 KRLIGLSQSTYIDKVLKRFNMQDSKKGFLSMSHGINLGK 263
>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 250 bits (638), Expect = 6e-64
Identities = 117/181 (64%), Positives = 147/181 (81%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF Q +G+DYDETFSP A +KSIRI+LAIAAY++Y+ WQMDV+ FLNG L+ DVYM
Sbjct: 648 VAKGFRQIQGVDYDETFSPFAMLKSIRIVLAIAAYFNYEIWQMDVKTTFLNGNLDEDVYM 707
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
TQP+GF +CKLQKSIYGLKQASRSWNI FD+ +K+ FV+++E+ CVY K G
Sbjct: 708 TQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKALRFVKNEEEPCVYKKISG 767
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
++F+++YVDDIL+IGN+I M++SV+T L N F MKDLGE YILGIRIYRDRSKRL+G
Sbjct: 768 SALVFLILYVDDILLIGNDILMLESVKTSLKNRFSMKDLGEAAYILGIRIYRDRSKRLIG 827
Query: 541 L 543
L
Sbjct: 828 L 828
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 234 bits (597), Expect(2) = 2e-63
Identities = 107/181 (59%), Positives = 143/181 (79%)
Frame = +1
Query: 1 VARGFSQREGIDYDETFSPVAKIKSIRILLAIAAYYDYDNWQMDVRNAFLNGELEGDVYM 180
VA+GF+Q+EG+DY++TFSPV +KSIRILL+I AYYDY+ WQMDV+ FLNG LE +YM
Sbjct: 213 VAKGFTQKEGVDYEDTFSPVXMLKSIRILLSIXAYYDYEIWQMDVKTXFLNGHLEETIYM 272
Query: 181 TQPEGFTSQSRPNAVCKLQKSIYGLKQASRSWNICFDKAIKSFDFVRSKEDYCVYSKRKG 360
QPEGF + + VCKLQ+SIYGLKQASRSWNI F++AIKS+ F ++ + CVY + G
Sbjct: 273 VQPEGFVVKDQEQKVCKLQRSIYGLKQASRSWNIIFNEAIKSYGFEQNLGEPCVYKQIGG 332
Query: 361 ENIIFIVIYVDDILIIGNNIRMMQSVRTWLSNSFKMKDLGEVYYILGIRIYRDRSKRLLG 540
+ ++F+V+YVDDIL+IGN++ + V+ WL++ F+MKDLGE YILGI++ RDR RLL
Sbjct: 333 DKVVFLVLYVDDILLIGNDVESLSKVKNWLASQFQMKDLGEASYILGIQMTRDRKNRLLA 392
Query: 541 L 543
L
Sbjct: 393 L 393
Score = 36.2 bits (82), Expect(2) = 2e-63
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +3
Query: 528 KVVRTAQSTYIDKVLRNFSIENSKKWSILMGHSIKLLKK 644
+++ +Q+ YIDKVL F++ENSKK ++ H + L K+
Sbjct: 389 RLLALSQAAYIDKVLVKFAMENSKKGNLPSRHGVHLSKE 427