BLASTX nr result
ID: Mentha23_contig00034158
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha23_contig00034158
(585 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclep... 69 1e-09
ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica ... 67 3e-09
dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [N... 67 4e-09
ref|YP_008992313.1| ribosomal protein S4 (mitochondrion) [Salvia... 67 5e-09
ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|375911... 66 6e-09
sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitoc... 66 6e-09
gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana] 66 6e-09
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ... 66 8e-09
ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet... 66 8e-09
ref|YP_004222288.1| ribosomal protein S4 [Beta vulgaris subsp. m... 65 1e-08
ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgari... 65 1e-08
ref|YP_006460178.1| ribosomal protein subunit S4 (mitochondrion)... 62 1e-07
gb|EPS74675.1| hypothetical protein M569_00050 [Genlisea aurea] 60 3e-07
gb|EXB57808.1| hypothetical protein L484_002790 [Morus notabilis] 59 7e-07
gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella t... 59 7e-07
ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus] gi|... 59 1e-06
ref|YP_006280945.1| ribosomal protein S4 (mitochondrion) [Spirod... 58 2e-06
ref|YP_005090421.1| rps4 gene product (mitochondrion) [Boea hygr... 58 2e-06
ref|XP_003588262.1| Ribosomal protein S4 [Medicago truncatula] g... 58 2e-06
gb|EXB66620.1| Ribosomal protein S4 [Morus notabilis] 58 2e-06
>ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclepias syriaca]
gi|556562347|gb|AGZ63043.1| ribosomal protein S4
(mitochondrion) [Asclepias syriaca]
Length = 274
Score = 68.6 bits (166), Expect = 1e-09
Identities = 33/63 (52%), Positives = 42/63 (66%)
Frame = -3
Query: 457 SYSPQQLGTNRFRRNXXXXXIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLL 278
S SP Q R R+ +LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL
Sbjct: 209 SASPHQFTMKRKRKRI-----ELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLL 263
Query: 277 CWS 269
WS
Sbjct: 264 LWS 266
>ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica Group]
gi|92700092|dbj|BAC19883.2| Ribosomal protein S4 [Oryza
sativa Japonica Group]
Length = 352
Score = 67.4 bits (163), Expect = 3e-09
Identities = 30/52 (57%), Positives = 38/52 (73%)
Frame = -3
Query: 424 FRRNXXXXXIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 269
F R I+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 293 FTRKIRIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLLLWS 344
>dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [Nicotiana tabacum]
Length = 349
Score = 67.0 bits (162), Expect = 4e-09
Identities = 29/54 (53%), Positives = 40/54 (74%)
Frame = -3
Query: 430 NRFRRNXXXXXIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 269
++F + I+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 288 HQFTKKIKIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLLLWS 341
>ref|YP_008992313.1| ribosomal protein S4 (mitochondrion) [Salvia miltiorrhiza]
gi|534292286|gb|AGU16578.1| ribosomal protein S4
(mitochondrion) [Salvia miltiorrhiza]
Length = 351
Score = 66.6 bits (161), Expect = 5e-09
Identities = 32/60 (53%), Positives = 40/60 (66%)
Frame = -3
Query: 457 SYSPQQLGTNRFRRNXXXXXIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLL 278
S SP Q NR R+N I+LPTHY EVNH+ KA++ YGP+I HIP + +KD NLL
Sbjct: 281 SASPHQFTMNRKRKNRKIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLL 340
>ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|37591124|dbj|BAC98926.1|
ribosomal protein S4 [Brassica napus]
Length = 362
Score = 66.2 bits (160), Expect = 6e-09
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = -3
Query: 394 DLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 269
+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 313 ELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLKDLNLLLWS 354
>sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitochondrial
Length = 362
Score = 66.2 bits (160), Expect = 6e-09
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = -3
Query: 394 DLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 269
+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 313 ELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLKDLNLLLWS 354
>gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana]
Length = 362
Score = 66.2 bits (160), Expect = 6e-09
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = -3
Query: 394 DLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 269
+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 313 ELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLKDLNLLLWS 354
>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
gi|357197350|gb|AET62946.1| ribosomal protein S4
(mitochondrion) [Lotus japonicus]
Length = 358
Score = 65.9 bits (159), Expect = 8e-09
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = -3
Query: 394 DLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 269
+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 309 ELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLLLWS 350
>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
gi|372450274|ref|YP_005090457.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197313|gb|AET62910.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197320|gb|AET62917.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
Length = 358
Score = 65.9 bits (159), Expect = 8e-09
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = -3
Query: 394 DLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 269
+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 309 ELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNLLLWS 350
>ref|YP_004222288.1| ribosomal protein S4 [Beta vulgaris subsp. maritima]
gi|317905723|emb|CBJ14108.1| ribosomal protein S4 [Beta
vulgaris subsp. maritima] gi|319439803|emb|CBJ17515.1|
ribosomal protein S4 [Beta vulgaris subsp. maritima]
Length = 315
Score = 65.5 bits (158), Expect = 1e-08
Identities = 33/71 (46%), Positives = 46/71 (64%)
Frame = -3
Query: 481 ANVDRMRKSYSPQQLGTNRFRRNXXXXXIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHV 302
A +RM++++S T + I+LPTHY EVNH+ KA++FYGP+I HIP +
Sbjct: 239 AEHNRMKRNFSHSV--TLFLSKKRRIKRIELPTHYSEVNHRTLKAVVFYGPNIDHIPHDI 296
Query: 301 SMKDLNLLCWS 269
+KDLNLL WS
Sbjct: 297 RLKDLNLLLWS 307
>ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|346683270|ref|YP_004842202.1| ribosomal protein S4
[Beta macrocarpa] gi|87248052|gb|ABD36080.1| ribosomal
protein S4 [Beta vulgaris subsp. vulgaris]
gi|148491424|dbj|BAA99356.2| ribosomal protein S4 [Beta
vulgaris subsp. vulgaris] gi|320148708|emb|CBJ23346.1|
ribosomal protein S4 [Beta vulgaris subsp. maritima]
gi|345500188|emb|CBX25007.1| ribosomal protein S4 [Beta
macrocarpa] gi|384939188|emb|CBL52035.1| ribosoma
lprotein S4 (mitochondrion) [Beta vulgaris subsp.
maritima]
Length = 315
Score = 65.1 bits (157), Expect = 1e-08
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = -3
Query: 394 DLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLLCWS 269
+LPTHY EVNH+ KA++FYGP+I HIP + +KDLNLL WS
Sbjct: 266 ELPTHYSEVNHRTLKAVVFYGPNIDHIPHDIRLKDLNLLLWS 307
>ref|YP_006460178.1| ribosomal protein subunit S4 (mitochondrion) [Mimulus guttatus]
gi|340007672|gb|AEK26536.1| ribosomal protein subunit S4
(mitochondrion) [Mimulus guttatus]
Length = 353
Score = 62.0 bits (149), Expect = 1e-07
Identities = 30/60 (50%), Positives = 38/60 (63%)
Frame = -3
Query: 457 SYSPQQLGTNRFRRNXXXXXIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLL 278
S SP Q R R+ I+LPTHY EVNH+ KA++ YGP+I HIP + +KD NLL
Sbjct: 283 SASPHQFTMKRKRKKRKIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLL 342
>gb|EPS74675.1| hypothetical protein M569_00050 [Genlisea aurea]
Length = 354
Score = 60.5 bits (145), Expect = 3e-07
Identities = 31/60 (51%), Positives = 40/60 (66%)
Frame = -3
Query: 457 SYSPQQLGTNRFRRNXXXXXIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLL 278
S SP Q R R+ I+LPTHYLEVNH+ +KA++ YGP+I HIP + +KD NLL
Sbjct: 287 SASPHQFTMKRKRK---IKRIELPTHYLEVNHRTQKAVVSYGPNIGHIPHDIRLKDPNLL 343
>gb|EXB57808.1| hypothetical protein L484_002790 [Morus notabilis]
Length = 263
Score = 59.3 bits (142), Expect = 7e-07
Identities = 25/39 (64%), Positives = 32/39 (82%)
Frame = -3
Query: 394 DLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLL 278
+LPTHYLEVNH+ KA++ YGP+I HIP + +KDLNLL
Sbjct: 214 ELPTHYLEVNHRTPKAMVSYGPNIGHIPHDIRLKDLNLL 252
>gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella trichopoda]
Length = 354
Score = 59.3 bits (142), Expect = 7e-07
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = -3
Query: 430 NRFRRNXXXXXIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNL 281
+RF R I+LPTHYLEVN++ KA++FYGP I HIP + +KD NL
Sbjct: 284 HRFTRKRRIKRIELPTHYLEVNYRTLKAVVFYGPDIGHIPHDIRLKDPNL 333
>ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus]
gi|259156791|gb|ACV96653.1| ribosomal protein S4
[Citrullus lanatus]
Length = 355
Score = 58.9 bits (141), Expect = 1e-06
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = -3
Query: 394 DLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNL 281
+LPTHYLEVN++ KA++FYGP+I HIP + +KDLNL
Sbjct: 306 ELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDLNL 343
>ref|YP_006280945.1| ribosomal protein S4 (mitochondrion) [Spirodela polyrhiza]
gi|385252646|gb|AFI54954.1| ribosomal protein S4
(mitochondrion) [Spirodela polyrhiza]
Length = 349
Score = 58.2 bits (139), Expect = 2e-06
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = -3
Query: 430 NRFRRNXXXXXIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNL 281
++F R I+LPTHY EVNH+ KKA++ YGP+I HIP + +KD NL
Sbjct: 288 HQFTRKRRIKRIELPTHYSEVNHRTKKAVVSYGPNIGHIPHDIRLKDPNL 337
>ref|YP_005090421.1| rps4 gene product (mitochondrion) [Boea hygrometrica]
gi|340549497|gb|AEK53318.1| ribosomal protein S4
(mitochondrion) [Boea hygrometrica]
Length = 329
Score = 58.2 bits (139), Expect = 2e-06
Identities = 24/39 (61%), Positives = 31/39 (79%)
Frame = -3
Query: 394 DLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLL 278
+LPTHY EVNH+ KA++FYGP+I HIP + +KD NLL
Sbjct: 280 ELPTHYSEVNHRTPKAVVFYGPNIGHIPHDIRLKDPNLL 318
>ref|XP_003588262.1| Ribosomal protein S4 [Medicago truncatula]
gi|355477310|gb|AES58513.1| Ribosomal protein S4
[Medicago truncatula]
Length = 349
Score = 58.2 bits (139), Expect = 2e-06
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -3
Query: 421 RRNXXXXXIDLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNL 281
RR I+LPTHY EVNH+ KA++FYGP+I HIP + +KD NL
Sbjct: 291 RRKRRIKRIELPTHYSEVNHRTPKAVVFYGPNIGHIPHDIRLKDPNL 337
>gb|EXB66620.1| Ribosomal protein S4 [Morus notabilis]
Length = 307
Score = 57.8 bits (138), Expect = 2e-06
Identities = 24/39 (61%), Positives = 31/39 (79%)
Frame = -3
Query: 394 DLPTHYLEVNHKIKKAIMFYGPHIAHIPLHVSMKDLNLL 278
+LPTHY EVNH+ KA++ YGP+I HIP + +KDLNLL
Sbjct: 258 ELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDLNLL 296