BLASTX nr result
ID: Mentha23_contig00032617
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha23_contig00032617
(556 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr... 148 8e-34
ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252... 118 1e-27
ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854... 117 3e-27
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 116 6e-27
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera] 115 1e-26
gb|AAU90333.1| Putative gag and pol polyprotein, identical [Sola... 105 1e-23
emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera] 103 5e-23
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi] 106 6e-23
gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subc... 99 2e-22
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc... 99 2e-22
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo... 99 2e-22
gb|ABI34306.1| Polyprotein, putative [Solanum demissum] 102 2e-22
gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays] 93 4e-22
gb|AAM95676.1| putative polyprotein [Oryza sativa Japonica Group] 97 5e-22
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc... 97 7e-22
gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subc... 97 9e-22
gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subc... 97 9e-22
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group] 97 9e-22
gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subc... 97 1e-21
gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group... 97 1e-21
>gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
Length = 1034
Score = 148 bits (374), Expect = 8e-34
Identities = 66/103 (64%), Positives = 85/103 (82%)
Frame = -2
Query: 309 QDDDVSWWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGN 130
QDD+V+WW+DSGAT HVCKD WFK ++P++DGS+L MGN +T PI G G V L F+SG
Sbjct: 261 QDDEVAWWIDSGATIHVCKDRGWFKTYEPVQDGSVLYMGNESTAPILGRGKVVLEFSSGK 320
Query: 129 SLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHG 1
+L L++V++VPGIRKNLVS VLN CG+KQV+ESDKY+LS+ G
Sbjct: 321 TLDLNDVIHVPGIRKNLVSGSVLNKCGFKQVYESDKYVLSKCG 363
>ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252656 [Vitis vinifera]
Length = 946
Score = 118 bits (296), Expect(2) = 1e-27
Identities = 59/110 (53%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -2
Query: 324 ISETNQ--DDDVSWWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVS 151
+SE N + WW+D+GAT HVC D + F F+PIE+G + MGN T IKG G V
Sbjct: 323 VSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSTTSEIKGQGKVI 382
Query: 150 LVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHG 1
L TSG L+L+NVLYVP IRKNLVS +LNN G++ VFES+K++LS+ G
Sbjct: 383 LKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFESNKFVLSKSG 432
Score = 30.4 bits (67), Expect(2) = 1e-27
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 469 QGNKSKAPNKKSKLTCWKCGKTGHFKKDCR 380
+G SK P + K C+ CGK GH DCR
Sbjct: 267 KGGISKKPKFQGK--CFNCGKQGHKSVDCR 294
>ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854178, partial [Vitis
vinifera]
Length = 478
Score = 117 bits (293), Expect(2) = 3e-27
Identities = 59/110 (53%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -2
Query: 324 ISETNQ--DDDVSWWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVS 151
+SE N + WW+D+GAT HVC D + F F+PIE+G + MGN AT IKG G V
Sbjct: 323 VSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVI 382
Query: 150 LVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHG 1
L TSG L+L+NVLYVP IRKNLVS +LNN G++ VF+S+K +LS+ G
Sbjct: 383 LKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFDSNKVVLSKSG 432
Score = 30.4 bits (67), Expect(2) = 3e-27
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 469 QGNKSKAPNKKSKLTCWKCGKTGHFKKDCR 380
+G SK P + K C+ CGK GH DCR
Sbjct: 267 KGGISKKPKFQGK--CFNCGKQGHKSVDCR 294
>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 116 bits (290), Expect(2) = 6e-27
Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Frame = -2
Query: 324 ISETNQ--DDDVSWWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVS 151
+SE N + WW+D+GAT HVC D + F F+PIE+G + MGN AT IKG G V
Sbjct: 323 VSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVI 382
Query: 150 LVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHG 1
L TSG L+L+NVLYVP IRKNLVS +LNN G++ VF S+K +LS+ G
Sbjct: 383 LKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFXSNKVVLSKSG 432
Score = 30.4 bits (67), Expect(2) = 6e-27
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 469 QGNKSKAPNKKSKLTCWKCGKTGHFKKDCR 380
+G SK P + K C+ CGK GH DCR
Sbjct: 267 KGGISKKPKFQGK--CFNCGKQGHKSVDCR 294
>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
Length = 1277
Score = 115 bits (287), Expect(2) = 1e-26
Identities = 62/139 (44%), Positives = 83/139 (59%), Gaps = 15/139 (10%)
Frame = -2
Query: 372 RVEEKGKTRLVQVDPRISETNQDDDVS---------------WWVDSGATCHVCKDLQWF 238
R+ +K K + V I++ D D++ WW+D+GAT HVC D + F
Sbjct: 294 RLPKKNKPKEANVIDNITKNVSDIDLTTVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMF 353
Query: 237 KDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLN 58
F+PIE+G + MGN T IKG G V L TSG L+L+NVLYVP IRKNLV +LN
Sbjct: 354 STFEPIENGEKVFMGNSTTSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVFGSLLN 413
Query: 57 NCGYKQVFESDKYILSRHG 1
N G++ VFES+K +LS+ G
Sbjct: 414 NHGFRLVFESNKVVLSKSG 432
Score = 30.4 bits (67), Expect(2) = 1e-26
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 469 QGNKSKAPNKKSKLTCWKCGKTGHFKKDCR 380
+G SK P + K C+ CGK GH DCR
Sbjct: 267 KGGISKKPKFQGK--CFNCGKQGHKSVDCR 294
>gb|AAU90333.1| Putative gag and pol polyprotein, identical [Solanum demissum]
Length = 853
Score = 105 bits (263), Expect(2) = 1e-23
Identities = 48/109 (44%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Frame = -2
Query: 324 ISETNQDDDVS-WWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSL 148
I++ N ++V WWVDSGA HVC D WFK + E+ + +G+ T + G G V L
Sbjct: 145 ITDINMVENVDGWWVDSGANRHVCYDKDWFKKYTHFEEPKTIMLGDAHTTQVLGKGDVEL 204
Query: 147 VFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHG 1
F+SG L+L +VLY P +RKNL+SS + N G+KQ+ ESD+Y++ + G
Sbjct: 205 CFSSGRELTLKDVLYTPSMRKNLMSSFLFNKVGFKQIIESDQYVIVKKG 253
Score = 29.6 bits (65), Expect(2) = 1e-23
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 478 RKFQGNKSKAPNKK--SKLTCWKCGKTGHFKKDCR 380
+K G ++A N++ K C+ CGK+GH + CR
Sbjct: 90 KKNNGENNQAQNQQVQDKGPCFVCGKSGHIARFCR 124
>emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera]
Length = 1096
Score = 103 bits (256), Expect(2) = 5e-23
Identities = 52/96 (54%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
Frame = -2
Query: 324 ISETNQ--DDDVSWWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVS 151
+SE N + WW+D+GAT HVC D + F F+PIE+G + MGN AT IKG G V
Sbjct: 244 VSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVI 303
Query: 150 LVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYK 43
L TSG L+L+NVLYVP IRKNLVS +LNN G++
Sbjct: 304 LKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFR 339
Score = 30.4 bits (67), Expect(2) = 5e-23
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 469 QGNKSKAPNKKSKLTCWKCGKTGHFKKDCR 380
+G SK P + K C+ CGK GH DCR
Sbjct: 188 KGGISKKPKFQGK--CFNCGKQGHKSVDCR 215
>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
Length = 701
Score = 106 bits (264), Expect(2) = 6e-23
Identities = 52/97 (53%), Positives = 66/97 (68%)
Frame = -2
Query: 291 WWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSN 112
WW+D+GAT HVC D F F+ + L MGN AT I+G G V+L TSG L+L+N
Sbjct: 325 WWIDTGATRHVCSDKGLFTSFEAASNREKLFMGNSATSEIEGQGKVALKMTSGKELTLNN 384
Query: 111 VLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHG 1
VLYVP IRKNLVS +LN G++ VFESD +LS++G
Sbjct: 385 VLYVPEIRKNLVSGSLLNKHGFRMVFESDMVVLSKNG 421
Score = 26.9 bits (58), Expect(2) = 6e-23
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -1
Query: 478 RKFQGNKSKAPNKKSKLT--CWKCGKTGHFKKDCR 380
+K G K K++K C+ C K GH DCR
Sbjct: 251 KKKLGPKGGISKKQTKFQGKCYNCDKMGHKASDCR 285
>gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1453
Score = 99.4 bits (246), Expect(2) = 2e-22
Identities = 53/131 (40%), Positives = 80/131 (61%)
Frame = -2
Query: 393 RRTAGLERVEEKGKTRLVQVDPRISETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 214
R++A + E G + ++ P + D WWVD+GA HVC D+ F ++ +E
Sbjct: 418 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VER 474
Query: 213 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 34
GS L MGN + + G+GTV L FTSG ++ L NV +VP I+KNLVS +L G++ VF
Sbjct: 475 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 534
Query: 33 ESDKYILSRHG 1
ES+K ++S++G
Sbjct: 535 ESNKCVVSKYG 545
Score = 32.3 bits (72), Expect(2) = 2e-22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 463 NKSKAPNKKSKLTCWKCGKTGHFKKDC 383
N K K+K C+ CGK+GH+ KDC
Sbjct: 386 NFKKKGKGKAKGDCFVCGKSGHWAKDC 412
>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1413
Score = 99.0 bits (245), Expect(2) = 2e-22
Identities = 53/131 (40%), Positives = 80/131 (61%)
Frame = -2
Query: 393 RRTAGLERVEEKGKTRLVQVDPRISETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 214
R++A + E G + ++ PR+ D WWVD+GA HVC D+ F ++ +
Sbjct: 378 RKSANMIISEGGGTSGYGKILPRVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 434
Query: 213 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 34
GS L MGN + + G+GTV L FTSG ++ L NV +VP I+KNLVS +L G++ VF
Sbjct: 435 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 494
Query: 33 ESDKYILSRHG 1
ES+K ++S++G
Sbjct: 495 ESNKCVVSKYG 505
Score = 32.7 bits (73), Expect(2) = 2e-22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 463 NKSKAPNKKSKLTCWKCGKTGHFKKDC 383
N K K+K C+ CGK+GH+ KDC
Sbjct: 346 NFKKKSKGKAKGDCFVCGKSGHWAKDC 372
>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
Length = 1394
Score = 99.0 bits (245), Expect(2) = 2e-22
Identities = 53/131 (40%), Positives = 80/131 (61%)
Frame = -2
Query: 393 RRTAGLERVEEKGKTRLVQVDPRISETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 214
R++A + E G + ++ PR+ D WWVD+GA HVC D+ F ++ +
Sbjct: 359 RKSANMIISEGGGTSGYGKILPRVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 415
Query: 213 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 34
GS L MGN + + G+GTV L FTSG ++ L NV +VP I+KNLVS +L G++ VF
Sbjct: 416 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 475
Query: 33 ESDKYILSRHG 1
ES+K ++S++G
Sbjct: 476 ESNKCVVSKYG 486
Score = 32.7 bits (73), Expect(2) = 2e-22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 463 NKSKAPNKKSKLTCWKCGKTGHFKKDC 383
N K K+K C+ CGK+GH+ KDC
Sbjct: 327 NFKKKSKGKAKGDCFVCGKSGHWAKDC 353
>gb|ABI34306.1| Polyprotein, putative [Solanum demissum]
Length = 1691
Score = 102 bits (254), Expect(2) = 2e-22
Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Frame = -2
Query: 324 ISETNQDDDVS-WWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSL 148
I++ N ++V WW DSGA HVC D WFK + E+ + +G+ T + G G V L
Sbjct: 298 ITDINMVENVDGWWADSGANRHVCYDKDWFKKYTHFEEPKTIMLGDSHTTQVLGTGDVEL 357
Query: 147 VFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHG 1
FTSG L+L +VLY P +RK L+SS +LN G+KQ+ ES++Y++ + G
Sbjct: 358 CFTSGRVLTLKDVLYTPSMRKKLMSSFLLNKAGFKQIIESNQYVIVKKG 406
Score = 28.9 bits (63), Expect(2) = 2e-22
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 13/46 (28%)
Frame = -1
Query: 478 RKFQGNKSKAPNKKS-------------KLTCWKCGKTGHFKKDCR 380
+KF+ N + P K + K C+ CGK+GH + CR
Sbjct: 232 KKFKKNNGRPPKKNNGENIQAQNQQVQDKGPCFVCGKSGHIARFCR 277
>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
Length = 1264
Score = 92.8 bits (229), Expect(2) = 4e-22
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = -2
Query: 294 SWWVDSGATCHVCKDLQWFKDFKPIEDGSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLS 115
SWW+D+GA HVC D+ F ++ D S+L MGN + + G GTV L FTSG + L
Sbjct: 261 SWWLDTGANVHVCSDINLFSSYQGARDSSVL-MGNGSHASVHGTGTVDLKFTSGKIVQLK 319
Query: 114 NVLYVPGIRKNLVSSIVLNNCGYKQVFESDKYILSRHG 1
NV +VP I KNLVS +L G+K V ES+K ++S+ G
Sbjct: 320 NVHHVPSIHKNLVSGTLLCRDGFKVVLESNKLVVSKSG 357
Score = 37.7 bits (86), Expect(2) = 4e-22
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 9/35 (25%)
Frame = -1
Query: 460 KSKAPNK---------KSKLTCWKCGKTGHFKKDC 383
KS PNK K++LTC+ CG+ GHF KDC
Sbjct: 187 KSNKPNKTTNFKKKKNKAELTCFACGEAGHFAKDC 221
>gb|AAM95676.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1138
Score = 97.4 bits (241), Expect(2) = 5e-22
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = -2
Query: 393 RRTAGLERVEEKGKTRLVQVDPRISETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 214
R++A + E G + ++ P + D WWVD+GA HVC D+ F ++ +
Sbjct: 233 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VRR 289
Query: 213 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 34
GS L MGN + + G+GTV L FTSG ++ L NV +VP I+KNLVS +L G++ VF
Sbjct: 290 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 349
Query: 33 ESDKYILSRHG 1
ES+K ++S++G
Sbjct: 350 ESNKCVVSKYG 360
Score = 32.7 bits (73), Expect(2) = 5e-22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 463 NKSKAPNKKSKLTCWKCGKTGHFKKDC 383
N K K+K C+ CGK+GH+ KDC
Sbjct: 201 NFKKKSKGKAKGDCFVCGKSGHWAKDC 227
>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1303
Score = 97.1 bits (240), Expect(2) = 7e-22
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = -2
Query: 393 RRTAGLERVEEKGKTRLVQVDPRISETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 214
R++A + E G + ++ P + D WWVD+GA HVC D+ F ++ +
Sbjct: 378 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 434
Query: 213 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 34
GS L MGN + + G+GTV L FTSG ++ L NV +VP I+KNLVS +L G++ VF
Sbjct: 435 GSSLLMGNESLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 494
Query: 33 ESDKYILSRHG 1
ES+K ++S++G
Sbjct: 495 ESNKCVVSKYG 505
Score = 32.7 bits (73), Expect(2) = 7e-22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 463 NKSKAPNKKSKLTCWKCGKTGHFKKDC 383
N K K+K C+ CGK+GH+ KDC
Sbjct: 346 NFKKKSKGKAKGDCFVCGKSGHWAKDC 372
>gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1448
Score = 97.1 bits (240), Expect(2) = 9e-22
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = -2
Query: 393 RRTAGLERVEEKGKTRLVQVDPRISETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 214
R++A + E G + ++ P + D WWVD+GA HVC D+ F ++ +
Sbjct: 413 RKSANMVISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 469
Query: 213 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 34
GS L MGN + + G+GTV L FTSG ++ L NV +VP I+KNLVS +L G++ VF
Sbjct: 470 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 529
Query: 33 ESDKYILSRHG 1
ES+K ++S++G
Sbjct: 530 ESNKCVVSKYG 540
Score = 32.3 bits (72), Expect(2) = 9e-22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 463 NKSKAPNKKSKLTCWKCGKTGHFKKDC 383
N K K+K C+ CGK+GH+ KDC
Sbjct: 381 NFKKKGKGKAKGDCFVCGKSGHWAKDC 407
>gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1298
Score = 96.7 bits (239), Expect(2) = 9e-22
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = -2
Query: 393 RRTAGLERVEEKGKTRLVQVDPRISETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 214
R++A + E G + ++ P + D WWVD+GA HVC D+ F ++ +
Sbjct: 378 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 434
Query: 213 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 34
GS L MGN + + G+GTV L FTSG ++ L NV +VP I+KNLVS +L G++ VF
Sbjct: 435 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 494
Query: 33 ESDKYILSRHG 1
ES+K ++S++G
Sbjct: 495 ESNKCVVSKYG 505
Score = 32.7 bits (73), Expect(2) = 9e-22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 463 NKSKAPNKKSKLTCWKCGKTGHFKKDC 383
N K K+K C+ CGK+GH+ KDC
Sbjct: 346 NFKKKSKGKAKGDCFVCGKSGHWAKDC 372
>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 96.7 bits (239), Expect(2) = 9e-22
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = -2
Query: 393 RRTAGLERVEEKGKTRLVQVDPRISETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 214
R++A + E G + ++ P + D WWVD+GA HVC D+ F ++ +
Sbjct: 233 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 289
Query: 213 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 34
GS L MGN + + G+GTV L FTSG ++ L NV +VP I+KNLVS +L G++ VF
Sbjct: 290 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 349
Query: 33 ESDKYILSRHG 1
ES+K ++S++G
Sbjct: 350 ESNKCVVSKYG 360
Score = 32.7 bits (73), Expect(2) = 9e-22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 463 NKSKAPNKKSKLTCWKCGKTGHFKKDC 383
N K K+K C+ CGK+GH+ KDC
Sbjct: 201 NFKKKSKGKAKGDCFVCGKSGHWAKDC 227
>gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1457
Score = 96.7 bits (239), Expect(2) = 1e-21
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = -2
Query: 393 RRTAGLERVEEKGKTRLVQVDPRISETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 214
R++A + E G + ++ P + D WWVD+GA HVC D+ F ++ +
Sbjct: 422 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISLFSSYQ-VGR 478
Query: 213 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 34
GS L MGN + + G+GTV L FTSG ++ L NV +VP I+KNLVS +L G++ VF
Sbjct: 479 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 538
Query: 33 ESDKYILSRHG 1
ES+K ++S++G
Sbjct: 539 ESNKCVVSKYG 549
Score = 32.3 bits (72), Expect(2) = 1e-21
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 463 NKSKAPNKKSKLTCWKCGKTGHFKKDC 383
N K K+K C+ CGK+GH+ KDC
Sbjct: 390 NFKKKGKGKAKGDCFVCGKSGHWAKDC 416
>gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708705|gb|ABF96500.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1240
Score = 96.7 bits (239), Expect(2) = 1e-21
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = -2
Query: 393 RRTAGLERVEEKGKTRLVQVDPRISETNQDDDVSWWVDSGATCHVCKDLQWFKDFKPIED 214
R++A + E G + ++ P + D WWVD+GA HVC D+ F ++ +
Sbjct: 233 RKSANMIISEGGGTSGYGKILPTVLSVFHSPD--WWVDTGANIHVCADISQFSSYQ-VGR 289
Query: 213 GSLLKMGNVATEPIKGLGTVSLVFTSGNSLSLSNVLYVPGIRKNLVSSIVLNNCGYKQVF 34
GS L MGN + + G+GTV L FTSG ++ L NV +VP I+KNLVS +L G++ VF
Sbjct: 290 GSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVF 349
Query: 33 ESDKYILSRHG 1
ES+K ++S++G
Sbjct: 350 ESNKCVVSKYG 360
Score = 32.3 bits (72), Expect(2) = 1e-21
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 463 NKSKAPNKKSKLTCWKCGKTGHFKKDC 383
N K K+K C+ CGK+GH+ KDC
Sbjct: 201 NFKKKGKGKAKGDCFVCGKSGHWAKDC 227