BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha23_contig00032340
         (1019 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]   594   e-167
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus...   496   e-138
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    493   e-137
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   489   e-136
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     489   e-136
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   489   e-135
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    488   e-135
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     488   e-135
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   482   e-134
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   477   e-132
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...   472   e-131
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   472   e-131
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   467   e-129
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   467   e-129
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   465   e-128
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]       459   e-127
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   459   e-126
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   458   e-126
gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlise...   456   e-126
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   452   e-125

>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
          Length = 1195

 Score =  594 bits (1531), Expect = e-167
 Identities = 289/340 (85%), Positives = 313/340 (92%), Gaps = 2/340 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTTTP+K+PGV++EIG ++SRDEFVVGWRGP+TG DFLVDPFNGTCQI FT+DTAFSI+
Sbjct: 122  RRTTTPYKVPGVTVEIGAMKSRDEFVVGWRGPRTGLDFLVDPFNGTCQILFTKDTAFSIK 181

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            GEARPAVIKCNFK+EFVPREIN+IKRYKDF+S+V+L QLAS P LYYRTADDDIEESVP+
Sbjct: 182  GEARPAVIKCNFKMEFVPREINQIKRYKDFSSVVVLFQLASSPLLYYRTADDDIEESVPF 241

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPV--VDIE 537
            DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPR+  QLEKALG+LQ RRVP       E
Sbjct: 242  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRHLSQLEKALGYLQNRRVPVENGSPQE 301

Query: 538  RLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 717
            RLRVQDEPDFGVPM DPFFCFQYKEGL+FKVMFMVNAVVHKGIINQHQ S  FFDLLR Q
Sbjct: 302  RLRVQDEPDFGVPMADPFFCFQYKEGLNFKVMFMVNAVVHKGIINQHQTSKQFFDLLRSQ 361

Query: 718  NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 897
             EE NLVALKHIYSYKRP YDA RALD+V KWL+KNPKLLQRP+QMDDIVEVRRL+ITPS
Sbjct: 362  PEELNLVALKHIYSYKRPVYDAYRALDSVTKWLIKNPKLLQRPDQMDDIVEVRRLVITPS 421

Query: 898  KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            KAYCLPPEVELSNRVLR Y++ISDRFLRVTFMDEAMQTLN
Sbjct: 422  KAYCLPPEVELSNRVLRNYKNISDRFLRVTFMDEAMQTLN 461


>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
          Length = 1196

 Score =  496 bits (1276), Expect = e-138
 Identities = 236/340 (69%), Positives = 283/340 (83%), Gaps = 2/340 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTTTP+K+    +EIG LRSR+E VVGWRGP++G DFLVDPF+GTC++H  RDTAF  +
Sbjct: 123  RRTTTPYKLSDAFVEIGSLRSREELVVGWRGPRSGVDFLVDPFSGTCKLHIKRDTAFCFK 182

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            GEAR A+IKC+F+IEF PREI EIK Y+DF+S++IL+QLAS P +YYRTADDDIEE    
Sbjct: 183  GEARSAIIKCDFRIEFFPREIIEIKHYRDFSSLIILIQLASSPLIYYRTADDDIEEPATC 242

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI--E 537
            DLLDDDDPWIRTTDF   GA GR NTYRISVRP N   L KAL +L++RRVP + +   +
Sbjct: 243  DLLDDDDPWIRTTDFTSGGAFGRCNTYRISVRPHNGPHLLKALDYLRKRRVPVLDERTRQ 302

Query: 538  RLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 717
            RL VQDEPDFG+P+ DPF C QYKEG+SFKVMF++NAV+HKGIINQHQ+S+   D+ RRQ
Sbjct: 303  RLVVQDEPDFGMPVLDPFLCIQYKEGISFKVMFLLNAVMHKGIINQHQISEQLLDMFRRQ 362

Query: 718  NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 897
             E+ N VALKH+ SYKRP YDA +A++ VQ+WL+KNPKLL+RP  MDDIVEVRRLIITP+
Sbjct: 363  PEDVNTVALKHMCSYKRPVYDAFKAVETVQRWLLKNPKLLERPRGMDDIVEVRRLIITPA 422

Query: 898  KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            KAYCLPPEVELSNRVLR Y++++DRFLRVTF DEAM TLN
Sbjct: 423  KAYCLPPEVELSNRVLRHYKAVADRFLRVTFTDEAMSTLN 462


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  493 bits (1269), Expect = e-137
 Identities = 242/340 (71%), Positives = 282/340 (82%), Gaps = 2/340 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS R
Sbjct: 123  RRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFR 182

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            GEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VIL QLAS P ++YRTADDDIEESV +
Sbjct: 183  GEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAF 242

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER- 540
            DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +   RRVP V    R 
Sbjct: 243  DLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRK 302

Query: 541  -LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 717
             LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR +
Sbjct: 303  MLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSR 361

Query: 718  NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 897
             EE NL ALKH++SYK P  DA++ L  +QKWL+KNPKLL+R  ++DDIVEVRRL+ITP+
Sbjct: 362  QEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPT 421

Query: 898  KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN
Sbjct: 422  KAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLN 461


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  489 bits (1260), Expect = e-136
 Identities = 239/340 (70%), Positives = 280/340 (82%), Gaps = 2/340 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNG C+I FT+DTAFS R
Sbjct: 123  RRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFSFR 182

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            GEA+ A+IKCNFKIEF+ REINEIK++KDFTS+VILLQLAS P ++YRTADDDIEESV +
Sbjct: 183  GEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESVAF 242

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER- 540
            DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    R 
Sbjct: 243  DLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRK 302

Query: 541  -LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 717
             LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR  
Sbjct: 303  MLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSH 361

Query: 718  NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 897
             EE NL ALKH++SYK P  DA++ L  +QKWL+KNPKLL+R  ++DDIVEVRRL+ITP+
Sbjct: 362  QEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPT 421

Query: 898  KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN
Sbjct: 422  KAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLN 461


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  489 bits (1259), Expect = e-136
 Identities = 241/340 (70%), Positives = 280/340 (82%), Gaps = 2/340 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTT PFK   VSIE+GVL S+D+FVVGWRGP+TG DFLVDPFNG C+I FT+DTAFS R
Sbjct: 123  RRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFSFR 182

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            GEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VILLQLAS P ++YRTADDDIEESV +
Sbjct: 183  GEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAF 242

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER- 540
            DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    R 
Sbjct: 243  DLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRK 302

Query: 541  -LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 717
             LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR  
Sbjct: 303  MLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSH 361

Query: 718  NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 897
             EE NL ALKH++SYK P  DA++ L  ++KWL+KNPKLL+R  ++DDIVEVRRL+ITP+
Sbjct: 362  QEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVITPT 421

Query: 898  KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN
Sbjct: 422  KAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLN 461


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  489 bits (1258), Expect = e-135
 Identities = 229/340 (67%), Positives = 284/340 (83%), Gaps = 2/340 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTT PFK P V +EIG+L SRDE+  GWRGP +G DFLVDPF+GTC+  FT+DTAFS +
Sbjct: 124  RRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFK 183

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            G  + AVIKCNFK+EF+ REINE+++ +D +S+++LLQL+S P +YYRTADDDIEE+VP+
Sbjct: 184  GMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPF 243

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER- 540
            DLLDDDDPWIRTTDF  SGAIGR N+YRIS+ PR   +L+KA+ +L+ RRV  + D  + 
Sbjct: 244  DLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKW 303

Query: 541  -LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 717
             LRV+DEPDFG+PM DPFFC Q+KEG+ F+VMF+VNAV+HKGIINQHQ+SD FFDLLR Q
Sbjct: 304  QLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQ 363

Query: 718  NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 897
             ++ N+ ALKHI SY+ P +DA + L  V KWL+KNPKLL+ P+++DDIVEVRRL+ITPS
Sbjct: 364  QKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPS 423

Query: 898  KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            KAYCLPPEVELSNRVLR Y+ +SDRFLRVTFMDE MQT+N
Sbjct: 424  KAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTIN 463


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  488 bits (1256), Expect = e-135
 Identities = 240/340 (70%), Positives = 279/340 (82%), Gaps = 2/340 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNGTC+I FT+DTAFS R
Sbjct: 123  RRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFSFR 182

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            GEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VILLQLAS P ++YRTADDDIEESV +
Sbjct: 183  GEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAF 242

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER- 540
            DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    R 
Sbjct: 243  DLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRK 302

Query: 541  -LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 717
             LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR +
Sbjct: 303  MLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSR 361

Query: 718  NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 897
             EE N  ALKH++SYK P  DA++ L  +QKWL+KNPKLL R  ++DDIVEVRRL+ITP+
Sbjct: 362  QEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPT 421

Query: 898  KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN
Sbjct: 422  KAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLN 461


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  488 bits (1255), Expect = e-135
 Identities = 239/340 (70%), Positives = 279/340 (82%), Gaps = 2/340 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS R
Sbjct: 123  RRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFR 182

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            GEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VIL QLAS P ++YRTADDDIEESV +
Sbjct: 183  GEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAF 242

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER- 540
            DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +   RRVP V    R 
Sbjct: 243  DLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRK 302

Query: 541  -LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 717
             LRV+DEPDFGV M DPFFCFQ  EG+SF+V+F+VNAV+HKGI+NQHQM++ FF LLR  
Sbjct: 303  MLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSH 361

Query: 718  NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 897
             EE N  ALKH++SYK P  DA++ L  +QKWL+KNPKLL R  ++DDIVEVRRL+ITP+
Sbjct: 362  QEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPT 421

Query: 898  KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN
Sbjct: 422  KAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLN 461


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  482 bits (1241), Expect = e-134
 Identities = 237/340 (69%), Positives = 276/340 (81%), Gaps = 2/340 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTT PFK   VS+E+GVL S+ +FVVGWRGP+TG DFLVDPFNGTC+I FT+DT FS R
Sbjct: 123  RRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFSFR 182

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            GEAR A+IKCNFKIEF+ REINEIK+ KDF S+VILLQLAS P ++YRTADDDIEESV +
Sbjct: 183  GEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESVAF 242

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER- 540
            DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    R 
Sbjct: 243  DLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRK 302

Query: 541  -LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 717
             LRV+DEPDFGV M DPFFCFQ  EG+SFKV+F+ NAV+HKGI+NQHQM + FF LLR  
Sbjct: 303  MLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLRSH 361

Query: 718  NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 897
             EE NL ALKH++SYK P  DA++ L  +QKWL+KNPKLL+R  ++DDIVEVRRL+ITP+
Sbjct: 362  QEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVITPT 421

Query: 898  KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN
Sbjct: 422  KAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLN 461


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score =  477 bits (1228), Expect = e-132
 Identities = 233/340 (68%), Positives = 273/340 (80%), Gaps = 2/340 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRT  PFK   V +EIGVL S D+FVVGWRGP +G +FLVDPFNGTC+I FTRDTAF  +
Sbjct: 123  RRTIMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFCFK 182

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            GE + AVIKCNFKIEF+ REINEI   KDF S+V+LLQL S P ++YRTADDDIEESV +
Sbjct: 183  GEGKHAVIKCNFKIEFLLREINEINECKDFASLVLLLQLTSSPLVFYRTADDDIEESVAF 242

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER- 540
            DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN   L+KA+ + +E RVP V    R 
Sbjct: 243  DLLDDDDQWIRTTDITCSGAIGRFNTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGNRQ 302

Query: 541  -LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 717
             LRV+DEPDFGV + +PFFCFQ  EG+SFKV+F+VNAV+ KGI+NQHQM+  FF LLR+ 
Sbjct: 303  MLRVRDEPDFGVSLSEPFFCFQNHEGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLRKH 362

Query: 718  NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 897
             E  NL ALKHI+SYKRP  DA++ L +VQKWL KNP LL+R  Q+DD+VEVRRL+ITP+
Sbjct: 363  QEGVNLAALKHIFSYKRPVNDAIQKLASVQKWLFKNPNLLERTGQLDDVVEVRRLVITPT 422

Query: 898  KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            KAYCLPP VELSNRVLRKY+ +SDRFLRVTFMDE M+ LN
Sbjct: 423  KAYCLPPTVELSNRVLRKYKHVSDRFLRVTFMDEGMRNLN 462


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score =  472 bits (1215), Expect = e-131
 Identities = 230/339 (67%), Positives = 273/339 (80%), Gaps = 1/339 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRT  P+K   V +EIGVL S D+FVVGWRGP +G +FLVDPFNG C+I FTRDTAF  +
Sbjct: 123  RRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFCFK 182

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            GE + AVIKCNFKIEF+ REINEI   KDF+S+V+LLQLAS P ++YRTADDDIEESV +
Sbjct: 183  GEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESVAF 242

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER- 540
            DLLDDDD WIRTTD   SGAIGR NTYR+S+RPRN    +KA+ + +E RVP V   E+ 
Sbjct: 243  DLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVVEQGEQM 302

Query: 541  LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQN 720
            LRV++EPDFG  + +PFFCFQ  EG+SFKV+F+VNAV+HKGI+NQHQM+  FF LLR+  
Sbjct: 303  LRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLRKHQ 362

Query: 721  EEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSK 900
            E  NL ALKHI+SYKRP  DA+R L +VQKWL  NP LL+R  Q+DD+VEVRRL+ITP+K
Sbjct: 363  EGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVITPTK 422

Query: 901  AYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            AYCLPP VELSNRVLRKY+ ISDRFLRVTFMDE M+ LN
Sbjct: 423  AYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLN 461


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  472 bits (1215), Expect = e-131
 Identities = 218/338 (64%), Positives = 277/338 (81%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RR TTPFK+ GV +EIG L SRDEF VGWRGP TG DFLVDPF+GTC+  F+R+TAFS +
Sbjct: 124  RRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFK 183

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
              A  AVIKC+FK+EF+ R+INEIK+Y + + +V+LLQLAS P+++YRTADDDIE SVP+
Sbjct: 184  STAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPF 243

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERL 543
            DLLDDDDPWIRTTDF  SGAIGR ++YR+S+ PR+  +L KA+ FL+ERRV        +
Sbjct: 244  DLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPI 303

Query: 544  RVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNE 723
            R++DEPDFG+PM DPFFC  +KEG++F V+F+VNAV+HKGI NQHQ+S++FFDLLR Q  
Sbjct: 304  RIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPT 363

Query: 724  EFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKA 903
            E N+ ALKHIY Y+RP +DA + L   Q+WL+KNPK  +  +++DDI E+RRL+ITP+KA
Sbjct: 364  EVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKA 423

Query: 904  YCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            YCLPPEVELSNRVLRKY+ ++DRFLRVTFMDE +QT+N
Sbjct: 424  YCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMN 461


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
            sinensis]
          Length = 1025

 Score =  467 bits (1202), Expect = e-129
 Identities = 218/337 (64%), Positives = 275/337 (81%)
 Frame = +1

Query: 7    RTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRG 186
            RT+TPFK+P V +EIG L SRDEF V WRGP +G DFLVDPF+GTC+  FTRD AF+++ 
Sbjct: 125  RTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKS 184

Query: 187  EARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYD 366
                AVIKC FK+EF+ REIN +K+Y +F+ + ILLQLAS P+++YRTADDDI   VP+D
Sbjct: 185  STEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFD 244

Query: 367  LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLR 546
            +LDDDDPWIRTTDF PSGAIGR N+YRIS+  R+R +L K + +L ERRV        + 
Sbjct: 245  MLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPIT 304

Query: 547  VQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEE 726
            +++EPDF VPM DPFFC  Y+EG+SF++MF+VNAV+HKGIINQHQ+SD+FFDLLR Q+ E
Sbjct: 305  IREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSRE 364

Query: 727  FNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAY 906
             N+ ALKHIYSYK P +DA + L  VQ+WL+K+P+L + P+Q+DDIVEVRRL+ITP+KAY
Sbjct: 365  VNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAY 424

Query: 907  CLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            CLPPEVELSNRVLRKY+ ++DRFLRVTFMDE +QT+N
Sbjct: 425  CLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMN 461


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score =  467 bits (1202), Expect = e-129
 Identities = 218/337 (64%), Positives = 275/337 (81%)
 Frame = +1

Query: 7    RTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRG 186
            RT+TPFK+P V +EIG L SRDEF V WRGP +G DFLVDPF+GTC+  FTRD AF+++ 
Sbjct: 125  RTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKS 184

Query: 187  EARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYD 366
                AVIKC FK+EF+ REIN +K+Y +F+ + ILLQLAS P+++YRTADDDI   VP+D
Sbjct: 185  STEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFD 244

Query: 367  LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLR 546
            +LDDDDPWIRTTDF PSGAIGR N+YRIS+  R+R +L K + +L ERRV        + 
Sbjct: 245  MLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPIT 304

Query: 547  VQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEE 726
            +++EPDF VPM DPFFC  Y+EG+SF++MF+VNAV+HKGIINQHQ+SD+FFDLLR Q+ E
Sbjct: 305  IREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSRE 364

Query: 727  FNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAY 906
             N+ ALKHIYSYK P +DA + L  VQ+WL+K+P+L + P+Q+DDIVEVRRL+ITP+KAY
Sbjct: 365  VNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAY 424

Query: 907  CLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            CLPPEVELSNRVLRKY+ ++DRFLRVTFMDE +QT+N
Sbjct: 425  CLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMN 461


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score =  465 bits (1197), Expect = e-128
 Identities = 217/338 (64%), Positives = 275/338 (81%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RR TTPFK+  V ++IG + SRDEF VGWRGP  G DFLVDPF+GTC+  F+RDTAFS +
Sbjct: 124  RRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFK 183

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            G    AVIKC+FK+EF+ R+INEIK+Y + + +V+ LQLAS P+++YRTADD+IEESVP+
Sbjct: 184  GTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPF 243

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERL 543
            DLLDDDD WIRTTDF PSGAIGR NTYR+ +RPR+  +L+KAL +L+E+RVP       L
Sbjct: 244  DLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPL 303

Query: 544  RVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNE 723
            R+ DEPDFG  M DPF+C  YKEG+ F++MF+VNAV+HKGI NQHQ+S++FF+LLR Q  
Sbjct: 304  RISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPR 363

Query: 724  EFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKA 903
            E N+ ALKHIYSY+RP +DA + L  V  WL++NP L + P+Q+DDIVE+RRL+ITP+KA
Sbjct: 364  EVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKA 423

Query: 904  YCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            +CL PEVELSNRVLRKY+ ++DRFLRVTFMDE MQT+N
Sbjct: 424  HCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTIN 461


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score =  459 bits (1181), Expect = e-127
 Identities = 217/338 (64%), Positives = 267/338 (78%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTTTP K+  V +EIG L  RDEF V WRGP  G DFLVDPF+G C+  FTRDTAFS +
Sbjct: 120  RRTTTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAFSFK 179

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
              A+ A++KC+FK+EF+ R+INEIK+Y D + +V+LL LAS P+++YRTADDDIE SVP+
Sbjct: 180  DMAKLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPF 239

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERL 543
            DLLDDDDPWIRTTDF PSGAIGR N+YR+S+ PR+  +L+KA+ +L+ERRV      + L
Sbjct: 240  DLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLRKAL 299

Query: 544  RVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNE 723
            R+Q EPDF VPM DP F    K G+ F++MF++N +VHKGI NQH +SD  FDL R Q  
Sbjct: 300  RIQSEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRNQPR 359

Query: 724  EFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKA 903
            E NL ALKHI SYKRP +DA   L NVQ+WL++NPKLL+ P Q+DDI EVRRL+ITP++A
Sbjct: 360  EINLAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITPTRA 419

Query: 904  YCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            YCLPPEVELSNRVLRKY+ +SDRFLRVTFMDE MQT+N
Sbjct: 420  YCLPPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMN 457


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  459 bits (1180), Expect = e-126
 Identities = 216/338 (63%), Positives = 272/338 (80%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTT PFK+  V +EIG L SRDEF+VGWRGP +G DFLVDPF+G C+  FTRDTAFS +
Sbjct: 124  RRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFK 183

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            G    AVI+C+FK+EF+ R+INEIK+Y D + +VILLQLAS P ++YRTADDDIE  VP+
Sbjct: 184  GTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPF 243

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERL 543
            DLLDDDDPWIRTTDF PSGAIGR N+YR+S+ PR+  +L++AL FL+ERRV        L
Sbjct: 244  DLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPL 303

Query: 544  RVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNE 723
             V  EP++ +PM DPFFC  ++EG+ F +MF+VNAV+HKGI NQHQ+SD+FFDLLR Q  
Sbjct: 304  HVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPL 363

Query: 724  EFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKA 903
            + N+ AL+HI SYK P +DA + L  VQ+WL+KNPKL +  +Q+DDIVE+RRL ITP++A
Sbjct: 364  DVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRA 423

Query: 904  YCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            YCLPPEVELSNRVLR+Y+ I+D+FLRVTFMDE +QT+N
Sbjct: 424  YCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMN 461


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  458 bits (1178), Expect = e-126
 Identities = 214/341 (62%), Positives = 279/341 (81%), Gaps = 3/341 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRTTTPFK+  V  EIG L SRDEF VGWRGP +G DFLVDPF+GTC+  F+R+TAFS++
Sbjct: 124  RRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLK 183

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
              +  AVIKC+FK+EF+ R+INEI +Y + + +V+LLQLAS P ++YRTADDDIE  VP+
Sbjct: 184  STSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPF 243

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE-- 537
            DLLDDDDPWIRTTDF  SGAIGR ++YR+S+ PR+  +L KA+ +L+ERRV  + +    
Sbjct: 244  DLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHR 303

Query: 538  -RLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRR 714
             R+R+ DEPDFG+PM DPFFC  +KEG++F+V+F+VNAV+HKGI NQHQ+S++FFDLLR 
Sbjct: 304  RRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 363

Query: 715  QNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITP 894
            Q+ E N+ ALKHI +Y+RP ++A R L  VQ+WL+KNP L + P+Q+ D+VE+RRL+ITP
Sbjct: 364  QHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITP 423

Query: 895  SKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            +KAYCLPPEVELSNRVLRKY+ ++DRFLRVTFMDE +Q +N
Sbjct: 424  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMN 464


>gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlisea aurea]
          Length = 1195

 Score =  456 bits (1173), Expect = e-126
 Identities = 223/340 (65%), Positives = 271/340 (79%), Gaps = 2/340 (0%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RRT + +K+  VS+E+G ++S++EF VGWRGP +G DF+VDP+NGTC+I F RDTAFSI 
Sbjct: 117  RRTISSYKLFDVSVEVGSMKSQNEFYVGWRGPSSGVDFIVDPYNGTCKIQFERDTAFSIT 176

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
             E R  V+KCNFKIEF PREI EIKRY+DF S++I+LQL S P +YYRTADDDIE++VP+
Sbjct: 177  DEDRLVVMKCNFKIEFTPREIIEIKRYRDFYSLIIMLQLFSSPLIYYRTADDDIEDAVPF 236

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI--E 537
            DLL+DDDPWIRTTDF  +GAIGR NTYRISVRP +  QL KAL +L+ RRV    +   +
Sbjct: 237  DLLEDDDPWIRTTDFTSTGAIGRCNTYRISVRPLSGPQLLKALDYLRLRRVKVFDEFKGK 296

Query: 538  RLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 717
             +RV DEP FG  M DPFFC Q  +GLSFK+ F+VNAV+H GIIN HQM++ FFDLLR Q
Sbjct: 297  HIRVMDEPGFGTLMSDPFFCIQNVKGLSFKITFLVNAVLHSGIINYHQMTEEFFDLLRTQ 356

Query: 718  NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPS 897
             EE  + AL H+   KRP YDA++AL  VQKWL+ NPKLL+RP + +D VEVRRLIITP+
Sbjct: 357  PEELIVPALTHLSFSKRPVYDAVKALKAVQKWLLGNPKLLERPMRNEDTVEVRRLIITPT 416

Query: 898  KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            +AYC+PPEVELSNRVLR YR +SDRFLRVTFMDEAMQ LN
Sbjct: 417  RAYCIPPEVELSNRVLRNYRDLSDRFLRVTFMDEAMQILN 456


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score =  452 bits (1164), Expect = e-125
 Identities = 217/338 (64%), Positives = 271/338 (80%)
 Frame = +1

Query: 4    RRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIR 183
            RR TTPFK+P VS+EIG L S DEF+VGWRGP +G +FLVDPF+ TC+  F+RDTAFS +
Sbjct: 124  RRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFK 183

Query: 184  GEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPY 363
            G    AVIKC+FK+EF+ REINE+K+Y + T  V+LLQLAS P ++YRTADDD E++VP+
Sbjct: 184  GTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPF 243

Query: 364  DLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERL 543
             LLDDDD WIRTTDF  SGAIGR NTYR+ VRPR+  +L+KA+ +L+ERRVP      +L
Sbjct: 244  GLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQL 303

Query: 544  RVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNE 723
            R++DEPDFG  M D F+ + YKEG+ F++MF+VNAV+HKGI NQHQ+S +FF LLR Q+ 
Sbjct: 304  RIRDEPDFGRSMSDHFY-YIYKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSM 362

Query: 724  EFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKA 903
            E N+ ALKHIYSY+ P YDA   L +V  WL+KNPKL + P Q+DDIVE+RRL+ITP+KA
Sbjct: 363  EVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKA 422

Query: 904  YCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLN 1017
            YCL PEVELSNRVLRKY+ ++DRFLRVTFMDE MQ +N
Sbjct: 423  YCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMN 460