BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha23_contig00026253
         (1099 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus...   486   e-138
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]   453   e-127
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...   452   e-127
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   451   e-126
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   451   e-126
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...   450   e-126
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]         450   e-126
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...   447   e-125
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   446   e-123
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...   438   e-120
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m...   418   e-114
ref|XP_002315996.2| DNA-directed RNA polymerase family protein [...   412   e-112
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...   411   e-112
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob...   407   e-111
ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theob...   407   e-111
ref|XP_006437832.1| hypothetical protein CICLE_v10030633mg [Citr...   403   e-111
ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   402   e-111
gb|EXB44918.1| DNA-directed RNA polymerase 1 [Morus notabilis]        403   e-110
emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA p...   403   e-110
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   401   e-109

>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
          Length = 983

 Score =  486 bits (1250), Expect(2) = e-138
 Identities = 235/316 (74%), Positives = 262/316 (82%)
 Frame = -3

Query: 950  TNQKRRQQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPY 771
            T+ + ++QPK +GGM  GKYN+LRRRQIK+ETEAWE AAKEYQELL DMCEQKLAPNLPY
Sbjct: 128  TDNREQKQPKLVGGMGLGKYNSLRRRQIKIETEAWENAAKEYQELLEDMCEQKLAPNLPY 187

Query: 770  VKSLFLGWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGG 591
            +KSLFLGWFEPLRDAIAAEQ+LCK+      +APYFDQLPA+MMAVITMHKLM LLMTGG
Sbjct: 188  IKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYFDQLPAEMMAVITMHKLMGLLMTGG 247

Query: 590  CRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXX 411
                 RV+QAA H+GEAIEHEVRIHKFL+  KRKNALNRT +E  DP AKEQ+RL     
Sbjct: 248  GNGSARVVQAACHIGEAIEHEVRIHKFLDNCKRKNALNRTSEEGPDPEAKEQDRLRKKVK 307

Query: 410  XXXXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDI 231
                      VR IV  QDDLK WGQ+AQ+KVGCRLIQIL  TAYIQPP+DQ +D  PDI
Sbjct: 308  ILMKKQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILTQTAYIQPPVDQRDDGAPDI 367

Query: 230  RPAFVHALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERG 51
            RPAFVH LK VET K S+RYGVIECDP+VRKG+EKTA+HMVIPYMPMLVPPLNWTGYERG
Sbjct: 368  RPAFVHTLKCVETLKGSRRYGVIECDPLVRKGMEKTARHMVIPYMPMLVPPLNWTGYERG 427

Query: 50   AYLFLPSYIMRTHGAR 3
            AYLFLPSY+MRTHGA+
Sbjct: 428  AYLFLPSYMMRTHGAK 443



 Score = 36.2 bits (82), Expect(2) = e-138
 Identities = 21/40 (52%), Positives = 26/40 (65%)
 Frame = -1

Query: 1099 GNARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKE 980
            G+ RGY AAAEALVSTS           E+QEL+++ NKE
Sbjct: 89   GSTRGYAAAAEALVSTS------EEEVDELQELIEEINKE 122


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  453 bits (1165), Expect(2) = e-127
 Identities = 218/310 (70%), Positives = 253/310 (81%)
 Frame = -3

Query: 932  QQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFL 753
            +QPK +GGM  GKYN LRRRQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFL
Sbjct: 153  KQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFL 212

Query: 752  GWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVR 573
            GWFEPLRDAIAAEQ+LC +      +AP+FDQLPA+MMAVITMHKLM LLMTGG     R
Sbjct: 213  GWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSAR 272

Query: 572  VIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXX 393
            V+QAA H+GEAIEHE RIH+FLE +K+ NAL+   ++      KE+ERL           
Sbjct: 273  VVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERLRKKVKILMKKQ 332

Query: 392  XXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVH 213
                VR+IV +QDD K WGQ+  +KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH
Sbjct: 333  KLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVH 392

Query: 212  ALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLP 33
             LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP +W GY++GAYLFLP
Sbjct: 393  TLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLP 452

Query: 32   SYIMRTHGAR 3
            SYIMRTHGA+
Sbjct: 453  SYIMRTHGAK 462



 Score = 30.4 bits (67), Expect(2) = e-127
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -1

Query: 1099 GNARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKEN 977
            G  R Y +AAEA+ STS            IQEL+++ NKEN
Sbjct: 109  GFLRSYGSAAEAIASTSEEDIDE------IQELIEEMNKEN 143


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  452 bits (1162), Expect(2) = e-127
 Identities = 217/310 (70%), Positives = 253/310 (81%)
 Frame = -3

Query: 932  QQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFL 753
            +QPK +GGM  GKYN LRRRQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFL
Sbjct: 153  KQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFL 212

Query: 752  GWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVR 573
            GWFEPLRDAIAAEQ+LC +      +AP+FDQLPA+MMAVITMHKLM LLMTGG     R
Sbjct: 213  GWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSAR 272

Query: 572  VIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXX 393
            V+QAA H+GEAIEHE RIH+FLE +K+ NAL+   ++      KE+ER+           
Sbjct: 273  VVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQ 332

Query: 392  XXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVH 213
                VR+IV +QDD K WGQ+  +KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH
Sbjct: 333  KLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVH 392

Query: 212  ALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLP 33
             LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP +W GY++GAYLFLP
Sbjct: 393  TLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLP 452

Query: 32   SYIMRTHGAR 3
            SYIMRTHGA+
Sbjct: 453  SYIMRTHGAK 462



 Score = 30.4 bits (67), Expect(2) = e-127
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -1

Query: 1099 GNARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKEN 977
            G  R Y +AAEA+ STS            IQEL+++ NKEN
Sbjct: 109  GFLRSYGSAAEAIASTSEEDIDE------IQELIEEMNKEN 143


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score =  451 bits (1160), Expect(2) = e-126
 Identities = 218/310 (70%), Positives = 255/310 (82%)
 Frame = -3

Query: 932  QQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFL 753
            +QPK +GGM  GKYN LRRRQIKVETEAWE+AAKEYQELL+DMCEQKLAPNLPY+KSLFL
Sbjct: 145  KQPKTVGGMGIGKYNLLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFL 204

Query: 752  GWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVR 573
            GWFEPLRDAIAAEQ+LC +      +AP+FDQLPA+MMAVITMHKLM LLMTGG     R
Sbjct: 205  GWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSAR 264

Query: 572  VIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXX 393
            V+QAA H+GEAIEHE RIH+FLE +K KNAL+ + +E      KE+ERL           
Sbjct: 265  VVQAASHIGEAIEHEARIHRFLEKTK-KNALDGSLEETAGDIMKERERLRKKVKILMKKQ 323

Query: 392  XXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVH 213
                VR+IV +QDD K WGQ+  +KVGC+LIQIL++TAYIQPP DQ++D PPDIRPAF+H
Sbjct: 324  KLQQVRKIVKQQDDEKPWGQDNLVKVGCKLIQILIETAYIQPPNDQLDDCPPDIRPAFMH 383

Query: 212  ALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLP 33
             LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP NW+GY+RGAYLFLP
Sbjct: 384  TLKTVETVKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLP 443

Query: 32   SYIMRTHGAR 3
            SYIMRTHGA+
Sbjct: 444  SYIMRTHGAK 453



 Score = 30.4 bits (67), Expect(2) = e-126
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -1

Query: 1099 GNARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKEN 977
            G  R Y +AAEA+ STS            IQEL+++ NKEN
Sbjct: 101  GILRSYGSAAEAIASTSEEDIDE------IQELIEEMNKEN 135


>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            lycopersicum]
          Length = 993

 Score =  451 bits (1160), Expect(2) = e-126
 Identities = 218/310 (70%), Positives = 255/310 (82%)
 Frame = -3

Query: 932  QQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFL 753
            +QPK +GGM  GKYN LRRRQIKVETEAWE+AAKEYQELL+DMCEQKLAPNLPY+KSLFL
Sbjct: 145  KQPKTVGGMGIGKYNLLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFL 204

Query: 752  GWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVR 573
            GWFEPL+DAIAAEQ+LC +      +AP+FDQLPA+MMAVITMHKLM LLMTGG     R
Sbjct: 205  GWFEPLKDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSAR 264

Query: 572  VIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXX 393
            V+QAA H+GEAIEHE RIH+FLE +K KNAL+ + +E      KE+ERL           
Sbjct: 265  VVQAASHIGEAIEHEARIHRFLEKTK-KNALDGSLEETAGDIMKERERLRKKVKILMKKQ 323

Query: 392  XXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVH 213
                VR+IV +QDD K WGQ+  +KVGCRLIQIL++TAYIQPP DQ+ED PPDIRPAF+H
Sbjct: 324  KLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILIETAYIQPPNDQLEDCPPDIRPAFMH 383

Query: 212  ALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLP 33
             LK+V+T K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP NW+GY+RGAYLFLP
Sbjct: 384  TLKTVDTVKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLP 443

Query: 32   SYIMRTHGAR 3
            SYIMRTHGA+
Sbjct: 444  SYIMRTHGAK 453



 Score = 30.4 bits (67), Expect(2) = e-126
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -1

Query: 1099 GNARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKEN 977
            G  R Y +AAEA+ STS            IQEL+++ NKEN
Sbjct: 101  GVLRSYGSAAEAIASTSEEDIDE------IQELIEEMNKEN 135


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score =  450 bits (1157), Expect(2) = e-126
 Identities = 217/310 (70%), Positives = 252/310 (81%)
 Frame = -3

Query: 932  QQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFL 753
            +QPK +GGM  GKYN LRRRQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFL
Sbjct: 153  KQPKTIGGMGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFL 212

Query: 752  GWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVR 573
            GWFEPLRDAIAAEQ+LC +      +AP+FDQLPA+MMAVITMHKLM LLMTGG     R
Sbjct: 213  GWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSAR 272

Query: 572  VIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXX 393
            V+QAA ++GEAIEHE RIH+FLE +K+ NAL+   +E      KE+ERL           
Sbjct: 273  VVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQ 332

Query: 392  XXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVH 213
                VR+IV +QDD K WGQ+  +KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH
Sbjct: 333  KLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVH 392

Query: 212  ALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLP 33
             LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP +W GY++G YLFLP
Sbjct: 393  TLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLP 452

Query: 32   SYIMRTHGAR 3
            SYIMRTHGA+
Sbjct: 453  SYIMRTHGAK 462



 Score = 31.2 bits (69), Expect(2) = e-126
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = -1

Query: 1099 GNARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKEN 977
            G  R Y +AAEA+VSTS           EIQEL+++ +KEN
Sbjct: 109  GRLRSYGSAAEAIVSTS------EEDIDEIQELIEEMDKEN 143


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score =  450 bits (1157), Expect(2) = e-126
 Identities = 217/310 (70%), Positives = 252/310 (81%)
 Frame = -3

Query: 932  QQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFL 753
            +QPK +GGM  GKYN LRRRQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFL
Sbjct: 153  KQPKTIGGMGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFL 212

Query: 752  GWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVR 573
            GWFEPLRDAIAAEQ+LC +      +AP+FDQLPA+MMAVITMHKLM LLMTGG     R
Sbjct: 213  GWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSAR 272

Query: 572  VIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXX 393
            V+QAA ++GEAIEHE RIH+FLE +K+ NAL+   +E      KE+ERL           
Sbjct: 273  VVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQ 332

Query: 392  XXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVH 213
                VR+IV +QDD K WGQ+  +KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH
Sbjct: 333  KLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVH 392

Query: 212  ALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLP 33
             LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP +W GY++G YLFLP
Sbjct: 393  TLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLP 452

Query: 32   SYIMRTHGAR 3
            SYIMRTHGA+
Sbjct: 453  SYIMRTHGAK 462



 Score = 31.2 bits (69), Expect(2) = e-126
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = -1

Query: 1099 GNARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKEN 977
            G  R Y +AAEA+VSTS           EIQEL+++ +KEN
Sbjct: 109  GRLRSYGSAAEAIVSTS------EEDIDEIQELIEEMDKEN 143


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris]
          Length = 1002

 Score =  447 bits (1151), Expect(2) = e-125
 Identities = 216/310 (69%), Positives = 251/310 (80%)
 Frame = -3

Query: 932  QQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFL 753
            +QPK +GGM  GKYN LRRRQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFL
Sbjct: 153  KQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFL 212

Query: 752  GWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVR 573
            GWFEPLRDAIAAEQ+LC +       AP+FDQLPA+MMAVITMHKLM  LMTGG     R
Sbjct: 213  GWFEPLRDAIAAEQKLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSAR 272

Query: 572  VIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXX 393
            V+QAA H+GEAIEHE RIH+FLE +K+ NAL+   ++      KE+ER+           
Sbjct: 273  VVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQ 332

Query: 392  XXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVH 213
                VR+IV +QDD K WGQ+  +KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH
Sbjct: 333  KLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVH 392

Query: 212  ALKSVETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLP 33
             LK+VET K S+RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP +W GY++GAYLFLP
Sbjct: 393  TLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLP 452

Query: 32   SYIMRTHGAR 3
            SYIMRTHGA+
Sbjct: 453  SYIMRTHGAK 462



 Score = 30.4 bits (67), Expect(2) = e-125
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -1

Query: 1099 GNARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKEN 977
            G  R Y +AAEA+ STS            IQEL+++ NKEN
Sbjct: 109  GFLRSYGSAAEAIASTSEEDTDE------IQELIEEMNKEN 143


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  446 bits (1147), Expect(2) = e-123
 Identities = 217/315 (68%), Positives = 252/315 (80%), Gaps = 2/315 (0%)
 Frame = -3

Query: 941  KRRQQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKS 762
            K  +QPK +GG+A GK+N LRRRQIK+ETEAWEEAAKEY+ELL DMCEQKLAPNLPY+KS
Sbjct: 124  KLEKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKS 183

Query: 761  LFLGWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRN 582
            LFLGWFEPLRD IAAEQ+LCK       +APYFD LPADMMAVITMHKLM LLMTG    
Sbjct: 184  LFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNG 243

Query: 581  GVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXX 402
              RV+QAA H+GEAIEHEVRI +F+E +K+K+A +   D   +P  KEQE+L        
Sbjct: 244  SARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLM 303

Query: 401  XXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPA 222
                   VR+IV RQDD K WGQ+A +KVG RLI++L++TAYIQPP DQ+ D PPDIRPA
Sbjct: 304  KKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPA 363

Query: 221  FVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGA 48
            FVH LK+V  ET K ++RYGVIECDP+VRKGLEKTA+HMVIPYMPMLVPPLNWTGY++GA
Sbjct: 364  FVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGA 423

Query: 47   YLFLPSYIMRTHGAR 3
            YLFLPSY+MR HGAR
Sbjct: 424  YLFLPSYVMRIHGAR 438



 Score = 24.6 bits (52), Expect(2) = e-123
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 1099 GNARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNK 983
            G  +GY +AAEA+ S             E+QELV++ NK
Sbjct: 88   GYQKGYASAAEAIASEE-----DMSGVDEVQELVEEVNK 121


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score =  438 bits (1127), Expect(2) = e-120
 Identities = 221/329 (67%), Positives = 258/329 (78%), Gaps = 19/329 (5%)
 Frame = -3

Query: 932  QQPKKMG-GMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLF 756
            +QPK++  GM  GKYN LR+RQIK+ETEAW+EAAKEYQELL DMCEQKLAPNLPY+KSLF
Sbjct: 138  KQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLADMCEQKLAPNLPYIKSLF 197

Query: 755  LGWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMT-GGCRNG 579
            LGWFEPLRDAIAA+Q+ CK  N   +HAPYFD LPAD MAVITMHKLM LLMT  G    
Sbjct: 198  LGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVITMHKLMGLLMTNNGGIGS 257

Query: 578  VRVIQAAGHVGEAIEHEVRIHKFLE-TSKRKNALNRTCD--------------EERDPAA 444
            VRV+QAA  +GEAIEHEVRIH+FLE T K+KN +++  +              +E++   
Sbjct: 258  VRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADSVPVTIEQEKLADEQEKLT 317

Query: 443  KEQERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPP 264
            KEQERL               VR IV  Q+DLK WGQEA +KVGCRLIQ+LMDTAYIQPP
Sbjct: 318  KEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVKVGCRLIQLLMDTAYIQPP 377

Query: 263  LDQMEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPM 90
            +DQ+ D PPDIRPAFVH LK++  +T KTS+RYGVIECDPIVRKG+EKTA+HMV+PYMPM
Sbjct: 378  VDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIVRKGMEKTARHMVMPYMPM 437

Query: 89   LVPPLNWTGYERGAYLFLPSYIMRTHGAR 3
            LVPP+NWTGY+RGAYLFLPSY+MRTHGA+
Sbjct: 438  LVPPINWTGYDRGAYLFLPSYVMRTHGAK 466



 Score = 23.5 bits (49), Expect(2) = e-120
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 1093 ARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKEN 977
            A+GY + AEA+ ST            EIQE+++   +EN
Sbjct: 94   AKGYASVAEAIASTD--GEEDSSGSEEIQEMLEDLIREN 130


>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
            putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
            DNA-directed RNA polymerase 2, chloroplast/mitochondrial
            precursor, putative [Ricinus communis]
          Length = 997

 Score =  418 bits (1074), Expect = e-114
 Identities = 210/326 (64%), Positives = 249/326 (76%), Gaps = 12/326 (3%)
 Frame = -3

Query: 944  QKRRQQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVK 765
            Q+++Q+ K + GM  GKY  L++RQIK+ETEAWEEAA+EYQELL DMCEQKLAPNLPY+K
Sbjct: 132  QQQQQRKKTIAGMGIGKYTILKKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIK 191

Query: 764  SLFLGWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCR 585
            SLFLGWFEPLRDAIA EQEL ++ N   +H PYFD LPADMMAVITMHKLM LLMT    
Sbjct: 192  SLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVITMHKLMGLLMTTNGG 251

Query: 584  NG-VRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEE---------RDPAAKEQ 435
            NG VRV+QAA  VGEAIEHE RIH+FLE +K+K    +  + E          +  AKEQ
Sbjct: 252  NGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPVTSDAEKLAKEQ 311

Query: 434  ERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQ 255
            E+L               VR +    DD   WGQEAQ+KVGCRLIQ+L++TAYIQPP++Q
Sbjct: 312  EKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLIETAYIQPPVNQ 371

Query: 254  MEDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVP 81
            + D  PDIRPAF+H LK+V  +T KTS+RYGVIECDPIVR GLEK+A+HMVIPYMPMLVP
Sbjct: 372  LGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSARHMVIPYMPMLVP 431

Query: 80   PLNWTGYERGAYLFLPSYIMRTHGAR 3
            PLNW GY++GAYLFLPSY+MRTHGA+
Sbjct: 432  PLNWEGYDQGAYLFLPSYVMRTHGAK 457


>ref|XP_002315996.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|550329816|gb|EEF02167.2| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 862

 Score =  412 bits (1058), Expect = e-112
 Identities = 209/321 (65%), Positives = 244/321 (76%), Gaps = 11/321 (3%)
 Frame = -3

Query: 932 QQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFL 753
           QQ K M GM  GKY  L+RRQ+K+ETEAWE+ A+EYQE+L DMCEQKLAPNLPYVKSLFL
Sbjct: 3   QQKKMMAGMGIGKYTILKRRQVKMETEAWEQTAREYQEMLEDMCEQKLAPNLPYVKSLFL 62

Query: 752 GWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTG-GCRNGV 576
           GWFEPLRDAI AEQELCK ++R   H  YF+ LPADMMAVITMHKLM LLMTG G    +
Sbjct: 63  GWFEPLRDAILAEQELCKVNSR-VPHRAYFNDLPADMMAVITMHKLMGLLMTGNGGTASI 121

Query: 575 RVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAA--------KEQERLTX 420
           RV+QAA  VGEAIE+E +IHKFLE +K++  L     E    AA        KEQE+L  
Sbjct: 122 RVVQAASVVGEAIENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLRK 181

Query: 419 XXXXXXXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAP 240
                        VRRIV   DD   WGQEA LKVG RLIQ++++TAYIQPP+DQ+ D P
Sbjct: 182 KVTTLMKKQKVHQVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDGP 241

Query: 239 PDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWT 66
           PDIRPAFVH LK++  +T K+S+RYGVIECDP+VRKGLEK+A+HMVIPYMPMLVPPLNWT
Sbjct: 242 PDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWT 301

Query: 65  GYERGAYLFLPSYIMRTHGAR 3
           GY++GAY FLPSY+MR HGA+
Sbjct: 302 GYDQGAYFFLPSYVMRIHGAK 322


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
            gi|550332836|gb|EEE88785.2| hypothetical protein
            POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score =  411 bits (1057), Expect = e-112
 Identities = 212/325 (65%), Positives = 249/325 (76%), Gaps = 11/325 (3%)
 Frame = -3

Query: 944  QKRRQQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVK 765
            Q R Q+ K + GM  GKY  L+RRQIK+ETEAWE+AA+EYQE+L DMCEQKLAPNLPYVK
Sbjct: 125  QFRPQEKKMVAGMGIGKYAILKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVK 184

Query: 764  SLFLGWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTG-GC 588
            SLFLGWFEPLRDAI AEQELCK  N   +H  +F  LPADMMAVITMHKLM LLMTG G 
Sbjct: 185  SLFLGWFEPLRDAIVAEQELCK-RNLRVSHRAHFSDLPADMMAVITMHKLMGLLMTGNGG 243

Query: 587  RNGVRVIQAAGHVGEAIEHEVRIHKFLE-TSKRKNALNRTCDEERDPA-------AKEQE 432
               +RV+QAA  VGEAIEHE RIHKFLE T KRKN   +  + E D A       +KEQE
Sbjct: 244  SASIRVVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEKLSKEQE 303

Query: 431  RLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQM 252
            +L               VRRIV   DD + WGQE  +KVG RLIQ++++TAYIQPP+DQ+
Sbjct: 304  KLRKKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQI 363

Query: 251  EDAPPDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPP 78
             D PPDIRPAFVH LK++  +T K+S+RYGVIECDP+VRKGLEK+A+HMVIPYMPMLVPP
Sbjct: 364  GDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPP 423

Query: 77   LNWTGYERGAYLFLPSYIMRTHGAR 3
            LNWTGY++GA+LFLPSY+MR HG++
Sbjct: 424  LNWTGYDQGAHLFLPSYVMRIHGSK 448


>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|590698457|ref|XP_007045722.1| DNA-directed RNA
            polymerase isoform 1 [Theobroma cacao]
            gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
            DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 996

 Score =  407 bits (1046), Expect(2) = e-111
 Identities = 204/320 (63%), Positives = 245/320 (76%), Gaps = 11/320 (3%)
 Frame = -3

Query: 929  QPKKMG-GMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFL 753
            QPKK+  GM   KYN L++RQIK+ETEAWEEAAKEYQELL+DMCE KLAPNLPY+KSLFL
Sbjct: 138  QPKKVAEGMGVAKYNTLKKRQIKIETEAWEEAAKEYQELLMDMCEHKLAPNLPYIKSLFL 197

Query: 752  GWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGC-RNGV 576
            GWFEPLRD+I  EQELCK++ R  +HA YF++L ADMMAV+TMHKLM LLMT      G+
Sbjct: 198  GWFEPLRDSIVGEQELCKENCR-ISHAAYFNELSADMMAVVTMHKLMGLLMTNTAGTGGI 256

Query: 575  RVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPA-------AKEQERLTXX 417
            RV+QAA  +GEAIEHE +I  FL  +K+K   ++  D E +P         K+QE+L   
Sbjct: 257  RVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKLRKK 316

Query: 416  XXXXXXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPP 237
                        VR+IV   D  KSWGQEA +KVGCRLIQ+L++ AYIQPP+DQ+ D PP
Sbjct: 317  VTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGDCPP 376

Query: 236  DIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTG 63
            DIRPAFVH+LK++  +  K S+RYGVIECD +VRKGLEKTA+HMVIPYMPMLVPP NWTG
Sbjct: 377  DIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQNWTG 436

Query: 62   YERGAYLFLPSYIMRTHGAR 3
            Y+RGAYLFLPSY+MRTHGA+
Sbjct: 437  YDRGAYLFLPSYVMRTHGAK 456



 Score = 24.3 bits (51), Expect(2) = e-111
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 1096 NARGYVAAAEALVST 1052
            N +GY +AAEA++ST
Sbjct: 95   NLKGYASAAEAVIST 109


>ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508709658|gb|EOY01555.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 932

 Score =  407 bits (1046), Expect(2) = e-111
 Identities = 204/320 (63%), Positives = 245/320 (76%), Gaps = 11/320 (3%)
 Frame = -3

Query: 929  QPKKMG-GMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFL 753
            QPKK+  GM   KYN L++RQIK+ETEAWEEAAKEYQELL+DMCE KLAPNLPY+KSLFL
Sbjct: 138  QPKKVAEGMGVAKYNTLKKRQIKIETEAWEEAAKEYQELLMDMCEHKLAPNLPYIKSLFL 197

Query: 752  GWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGC-RNGV 576
            GWFEPLRD+I  EQELCK++ R  +HA YF++L ADMMAV+TMHKLM LLMT      G+
Sbjct: 198  GWFEPLRDSIVGEQELCKENCR-ISHAAYFNELSADMMAVVTMHKLMGLLMTNTAGTGGI 256

Query: 575  RVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPA-------AKEQERLTXX 417
            RV+QAA  +GEAIEHE +I  FL  +K+K   ++  D E +P         K+QE+L   
Sbjct: 257  RVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKLRKK 316

Query: 416  XXXXXXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPP 237
                        VR+IV   D  KSWGQEA +KVGCRLIQ+L++ AYIQPP+DQ+ D PP
Sbjct: 317  VTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGDCPP 376

Query: 236  DIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTG 63
            DIRPAFVH+LK++  +  K S+RYGVIECD +VRKGLEKTA+HMVIPYMPMLVPP NWTG
Sbjct: 377  DIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQNWTG 436

Query: 62   YERGAYLFLPSYIMRTHGAR 3
            Y+RGAYLFLPSY+MRTHGA+
Sbjct: 437  YDRGAYLFLPSYVMRTHGAK 456



 Score = 24.3 bits (51), Expect(2) = e-111
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 1096 NARGYVAAAEALVST 1052
            N +GY +AAEA++ST
Sbjct: 95   NLKGYASAAEAVIST 109


>ref|XP_006437832.1| hypothetical protein CICLE_v10030633mg [Citrus clementina]
            gi|557540028|gb|ESR51072.1| hypothetical protein
            CICLE_v10030633mg [Citrus clementina]
          Length = 980

 Score =  403 bits (1036), Expect(2) = e-111
 Identities = 204/326 (62%), Positives = 242/326 (74%), Gaps = 9/326 (2%)
 Frame = -3

Query: 953  DTNQKRRQQPKKMG-GMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNL 777
            D++    +QPKK G GM T KY  L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNL
Sbjct: 117  DSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNL 176

Query: 776  PYVKSLFLGWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMT 597
            PYVKSLFLGWFEPLRDAIA +Q   +D  +  T+APYF+ LPADMMAVITMHKL+ LLMT
Sbjct: 177  PYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 236

Query: 596  GGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAA-------KE 438
                  VRV+QAA  +GEAIE+E RI  F E++K+KNA +   + + +P         KE
Sbjct: 237  NA--GEVRVVQAACQIGEAIENEARIRSFFESTKKKNATDNNLEGDSEPVTNDPEKLIKE 294

Query: 437  QERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLD 258
            QE+L               VR IV    DLK WGQ+A +KVGCRLIQ+LM+TAYIQPP+D
Sbjct: 295  QEKLKKRVTSLIKKQKLRQVRGIVKGHVDLKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354

Query: 257  QMEDAPPDIRPAFVHALKS-VETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVP 81
            Q+ D+PPDIRPAFVH LKS  +     +RYGVIECDP+VRKGLEKT +HM+IPYMPMLVP
Sbjct: 355  QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVP 414

Query: 80   PLNWTGYERGAYLFLPSYIMRTHGAR 3
            PLNW GY RG + FLPSY+MRTHGAR
Sbjct: 415  PLNWRGYNRGGHFFLPSYVMRTHGAR 440



 Score = 26.9 bits (58), Expect(2) = e-111
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 1093 ARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKE 980
            +R Y +AAEA+ S S            +QEL+D+FN++
Sbjct: 79   SRSYASAAEAIASESELSGSEE-----VQELIDQFNEK 111


>ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Citrus
            sinensis]
          Length = 980

 Score =  402 bits (1033), Expect(2) = e-111
 Identities = 203/326 (62%), Positives = 242/326 (74%), Gaps = 9/326 (2%)
 Frame = -3

Query: 953  DTNQKRRQQPKKMG-GMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNL 777
            D++    +QPKK G GM T KY  L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNL
Sbjct: 117  DSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNL 176

Query: 776  PYVKSLFLGWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMT 597
            PYVKSLFLGWFEPLRDAIA +Q   +D  +  T+APYF+ LPADMMAVITMHKL+ LLMT
Sbjct: 177  PYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 236

Query: 596  GGCRNGVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAA-------KE 438
                  VRV+QAA  +GEAIE+E RI  F E++K+KNA +   + + +P         KE
Sbjct: 237  NA--GEVRVVQAACQIGEAIENEARIRSFFESTKKKNATDNNLEGDSEPVTNDPEKLIKE 294

Query: 437  QERLTXXXXXXXXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLD 258
            Q++L               VR IV    DLK WGQ+A +KVGCRLIQ+LM+TAYIQPP+D
Sbjct: 295  QDKLKKRVTSLIKKQKLRQVRGIVKGHVDLKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354

Query: 257  QMEDAPPDIRPAFVHALKS-VETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVP 81
            Q+ D+PPDIRPAFVH LKS  +     +RYGVIECDP+VRKGLEKT +HM+IPYMPMLVP
Sbjct: 355  QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVP 414

Query: 80   PLNWTGYERGAYLFLPSYIMRTHGAR 3
            PLNW GY RG + FLPSY+MRTHGAR
Sbjct: 415  PLNWRGYNRGGHFFLPSYVMRTHGAR 440



 Score = 26.9 bits (58), Expect(2) = e-111
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 1093 ARGYVAAAEALVSTSXXXXXXXXXXXEIQELVDKFNKE 980
            +R Y +AAEA+ S S            +QEL+D+FN++
Sbjct: 79   SRSYASAAEAIASESELSGSEE-----VQELIDQFNEK 111


>gb|EXB44918.1| DNA-directed RNA polymerase 1 [Morus notabilis]
          Length = 1023

 Score =  403 bits (1036), Expect = e-110
 Identities = 201/321 (62%), Positives = 243/321 (75%), Gaps = 13/321 (4%)
 Frame = -3

Query: 926  PKK-MGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLG 750
            PK+ + GM T KY  LR+RQIK+ETEAWE+AAKEY+EL+VDMCE+KLAPNLPYVKSL LG
Sbjct: 140  PKRTVAGMGTAKYQKLRKRQIKIETEAWEQAAKEYRELMVDMCERKLAPNLPYVKSLLLG 199

Query: 749  WFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMT-GGCRNGVR 573
            WFEPLRDAIAA+QE C++     T+APYFD LPAD+MAVI MHKLM L+MT  G    +R
Sbjct: 200  WFEPLRDAIAADQEACREMKNKPTYAPYFDHLPADVMAVIAMHKLMGLMMTNSGIVGCIR 259

Query: 572  VIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPA---------AKEQERLTX 420
            V+QAA  +GEA+EHEV+I +F E +K+K     T  E+              K QE+L  
Sbjct: 260  VVQAASQIGEALEHEVKIQRFFEKTKKKKKKKNTNGEDVSDVVSAEQGNLNGKGQEKLRK 319

Query: 419  XXXXXXXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAP 240
                         VR IV R DD K WGQE  +KVGCRLIQ+LM+TAYIQPP+DQ++D+P
Sbjct: 320  KVTQMIKKQKVQQVRIIVDRVDDSKPWGQEGHVKVGCRLIQLLMETAYIQPPVDQLDDSP 379

Query: 239  PDIRPAFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWT 66
            PDIRPAFVH+LK+V  +T KTS+RYGVIECDP+VR+GLEKTA+HMVIPYMPMLVP   WT
Sbjct: 380  PDIRPAFVHSLKTVVKDTRKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMLVPANKWT 439

Query: 65   GYERGAYLFLPSYIMRTHGAR 3
            GY++GAYLFLPS +MRTHGA+
Sbjct: 440  GYDKGAYLFLPSQVMRTHGAK 460


>emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
            [Chenopodium album]
          Length = 988

 Score =  403 bits (1036), Expect = e-110
 Identities = 202/316 (63%), Positives = 237/316 (75%), Gaps = 4/316 (1%)
 Frame = -3

Query: 938  RRQQPKKM-GGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKS 762
            RR++P  M  GM  G+YN LR+RQIKVETEAW EAA+EYQELL DMCEQKLAPNLPY+KS
Sbjct: 135  RRKEPINMVAGMTAGRYNVLRKRQIKVETEAWNEAAREYQELLADMCEQKLAPNLPYMKS 194

Query: 761  LFLGWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRN 582
            LFLGWFEPL+DAI A QE CK       +   FD+LPADMMAVITMHKLM LLMTG    
Sbjct: 195  LFLGWFEPLKDAIKAHQEACKVGRNRPLYGECFDELPADMMAVITMHKLMGLLMTGSGNG 254

Query: 581  GVRVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXX 402
            G  VIQAA  +GEA+E E +I KFLE SK+K A N   + + D +AK Q+RL        
Sbjct: 255  GTTVIQAATQIGEAVEQEAKIRKFLEKSKKKPATN---NNDEDDSAKAQQRLAKKVTTLM 311

Query: 401  XXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPA 222
                   VR IV  QDD K W Q+ Q+KVGC+LIQ+L +TAYIQPP DQ+ D PPDIRPA
Sbjct: 312  KKQKISQVREIVRGQDDSKPWSQDNQVKVGCKLIQLLAETAYIQPPADQLADGPPDIRPA 371

Query: 221  FVHALKSV--ETGK-TSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERG 51
            F+H  K+V  E+ K   +RYGVIECDP+VR+GLEKTA+HMVIPYMPML+PPLNWTGY++G
Sbjct: 372  FIHTQKTVCKESQKGLRRRYGVIECDPLVRRGLEKTARHMVIPYMPMLIPPLNWTGYDKG 431

Query: 50   AYLFLPSYIMRTHGAR 3
            AYL+LPSYIMRTHG +
Sbjct: 432  AYLYLPSYIMRTHGVK 447


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score =  401 bits (1031), Expect = e-109
 Identities = 200/316 (63%), Positives = 239/316 (75%), Gaps = 5/316 (1%)
 Frame = -3

Query: 935  RQQPKKMGGMATGKYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLF 756
            R + +   GM +GKY  L+ RQ+K+ETEAWE+AA EY+ELL+DMCEQKLAPNLPY+KSLF
Sbjct: 171  RNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLF 230

Query: 755  LGWFEPLRDAIAAEQELCKDSNRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGV 576
            LGWFEPLRDAIA EQE C+ +     +APYFDQLPADMMAVITMHKLM LLMTGG     
Sbjct: 231  LGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA 290

Query: 575  RVIQAAGHVGEAIEHEVRIHKFLETSKRKNALNRTCDEERDPA---AKEQERLTXXXXXX 405
            RV+QAA  +G+AIE EVRIHKFLE +K+KN      DEE D +     EQE+L       
Sbjct: 291  RVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL 350

Query: 404  XXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRP 225
                    VRRIV  QDD K WGQ+A+ KVG R+I++L  TAYIQ P DQ+ DAPPDI P
Sbjct: 351  IKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFP 410

Query: 224  AFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERG 51
            AF HAL++V  ET   SK+YGVIEC+P+V KGLE+TA+HMVIPYMPMLVPP+ WTGY++G
Sbjct: 411  AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKG 470

Query: 50   AYLFLPSYIMRTHGAR 3
            A+ FLPSY+MRTHGA+
Sbjct: 471  AHFFLPSYVMRTHGAK 486