BLASTX nr result
ID: Mentha23_contig00025865
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha23_contig00025865
(464 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA94675.1| retrotransposon protein, putative, Ty1-copia subc... 57 3e-12
gb|AAD17357.1| contains similarity to retrovirus-related polypro... 77 3e-12
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group] 77 3e-12
gb|AAT69633.1| putative polyprotein [Oryza sativa Japonica Group] 57 6e-12
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 74 2e-11
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group] 74 2e-11
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 73 5e-11
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 73 5e-11
dbj|BAA22288.1| polyprotein [Oryza australiensis] 72 6e-11
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 70 2e-10
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 69 7e-10
emb|CAN67912.1| hypothetical protein VITISV_004101 [Vitis vinifera] 58 1e-09
emb|CAE05252.2| OSJNBb0115I09.14 [Oryza sativa Japonica Group] 60 3e-09
gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subc... 66 4e-09
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 66 4e-09
emb|CAN75475.1| hypothetical protein VITISV_006889 [Vitis vinifera] 57 7e-09
emb|CAN72447.1| hypothetical protein VITISV_027001 [Vitis vinifera] 55 9e-09
gb|AAK70633.1|AC091238_11 Putative gag-pol polyprotein [Oryza sa... 65 1e-08
emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera] 55 3e-08
emb|CAN83623.1| hypothetical protein VITISV_010870 [Vitis vinifera] 55 4e-08
>gb|ABA94675.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 815
Score = 57.4 bits (137), Expect(2) = 3e-12
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +2
Query: 245 QGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISI 424
QG R + GE +RV NG E +G + L L +G L LH+ +VPS++RN++S+
Sbjct: 263 QGFHTRRMLARGERCIRVANGVEAEVEAIGEYPLKLNNGFTLYLHNVLYVPSLSRNLVSV 322
Query: 425 PLLDMDGFHFHF 460
L DG++ +F
Sbjct: 323 SCLADDGYNCYF 334
Score = 39.7 bits (91), Expect(2) = 3e-12
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = +1
Query: 121 PKGGTHKKPDISKDQCVFCRQKGHWKRDCPKF 216
P+ + + ++ +D C +C+QKGH+++DCP+F
Sbjct: 214 PQVDPNPRQEVERDACRWCKQKGHFQKDCPEF 245
>gb|AAD17357.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] gi|7267382|emb|CAB77943.1| putative transposon
protein [Arabidopsis thaliana]
Length = 769
Score = 76.6 bits (187), Expect = 3e-12
Identities = 36/69 (52%), Positives = 50/69 (72%)
Frame = +2
Query: 248 GLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISIP 427
G+++S + G+VDLR+ NGARV+ VGT+ L PSG L L +CY+V +I +NIIS+
Sbjct: 75 GINNSITMEEGQVDLRMANGARVSTLVVGTYSLSFPSGMVLELKNCYYVHAINKNIISVS 134
Query: 428 LLDMDGFHF 454
LDM+GFHF
Sbjct: 135 CLDMEGFHF 143
>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 76.6 bits (187), Expect = 3e-12
Identities = 37/75 (49%), Positives = 50/75 (66%)
Frame = +2
Query: 230 LLRQAQGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITR 409
+ + QGL SR + GEVD+RVGNGARVA VGT L LPSG L L++CY +P++ +
Sbjct: 271 ICKSLQGLKRSRSLARGEVDIRVGNGARVAVVAVGTMSLSLPSGLVLELNNCYCIPALCK 330
Query: 410 NIISIPLLDMDGFHF 454
N+IS L +G+ F
Sbjct: 331 NVISASCLQAEGYGF 345
>gb|AAT69633.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1358
Score = 57.0 bits (136), Expect(2) = 6e-12
Identities = 27/61 (44%), Positives = 37/61 (60%)
Frame = +2
Query: 281 EVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISIPLLDMDGFHFHF 460
E +RV NG E VG L+L +G L+L D ++VPS+ RN+IS+ LD DG+ F
Sbjct: 297 ESTIRVANGVEEKVEAVGDLPLELANGFILLLRDVFYVPSLQRNLISVSKLDFDGYDCRF 356
Query: 461 G 463
G
Sbjct: 357 G 357
Score = 38.9 bits (89), Expect(2) = 6e-12
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1
Query: 151 ISKDQCVFCRQKGHWKRDCPKF 216
+ KDQC+ C++ GH+K+DCP F
Sbjct: 259 VEKDQCLHCKKTGHYKKDCPDF 280
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 74.3 bits (181), Expect = 2e-11
Identities = 37/75 (49%), Positives = 50/75 (66%)
Frame = +2
Query: 230 LLRQAQGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITR 409
+ + QGL SR + GEVD+RVGNGARVAA VGT L LPSG L L++CY + ++ +
Sbjct: 364 ICKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCK 423
Query: 410 NIISIPLLDMDGFHF 454
N+IS L +G+ F
Sbjct: 424 NVISASCLQAEGYGF 438
>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 74.3 bits (181), Expect = 2e-11
Identities = 37/75 (49%), Positives = 50/75 (66%)
Frame = +2
Query: 230 LLRQAQGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITR 409
+ + QGL SR + GEVD+RVGNGARVAA VGT L LPSG L L++CY + ++ +
Sbjct: 291 ICKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCK 350
Query: 410 NIISIPLLDMDGFHF 454
N+IS L +G+ F
Sbjct: 351 NVISASCLQAEGYGF 365
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 72.8 bits (177), Expect = 5e-11
Identities = 35/75 (46%), Positives = 48/75 (64%)
Frame = +2
Query: 230 LLRQAQGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITR 409
+ + QGL SR + G VD+RVGNG RVA VGT L LPSG L L++CY +P++ +
Sbjct: 404 ICKSLQGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCK 463
Query: 410 NIISIPLLDMDGFHF 454
N+IS L +G+ F
Sbjct: 464 NVISASCLQAEGYGF 478
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 72.8 bits (177), Expect = 5e-11
Identities = 35/75 (46%), Positives = 48/75 (64%)
Frame = +2
Query: 230 LLRQAQGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITR 409
+ + QGL SR + G VD+RVGNG RVA VGT L LPSG L L++CY +P++ +
Sbjct: 404 ICKSLQGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCK 463
Query: 410 NIISIPLLDMDGFHF 454
N+IS L +G+ F
Sbjct: 464 NVISASCLQAEGYGF 478
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 72.4 bits (176), Expect = 6e-11
Identities = 37/73 (50%), Positives = 49/73 (67%)
Frame = +2
Query: 236 RQAQGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNI 415
+ QG+ SR +R GEV+LRVGNGA VA VGT L LPSG L L++CY VP++ +N+
Sbjct: 314 KSLQGMRRSRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQNV 373
Query: 416 ISIPLLDMDGFHF 454
IS L +G+ F
Sbjct: 374 ISASCLQAEGYDF 386
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 70.5 bits (171), Expect = 2e-10
Identities = 36/75 (48%), Positives = 49/75 (65%)
Frame = +2
Query: 230 LLRQAQGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITR 409
+ + QGL SR + GEVD+RVGNGARVAA VGT L LPS L L++ Y +P++ +
Sbjct: 288 ICKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSRLVLELNNYYCIPALCK 347
Query: 410 NIISIPLLDMDGFHF 454
N+IS L +G+ F
Sbjct: 348 NVISASCLQAEGYGF 362
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 68.9 bits (167), Expect = 7e-10
Identities = 35/70 (50%), Positives = 49/70 (70%)
Frame = +2
Query: 245 QGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISI 424
Q L+ +R+V GE+DLRVGN A+VAA T L LPSG + L++CY+VP+++RNIIS
Sbjct: 405 QSLTKNRRVARGEMDLRVGNKAKVAALSAETLPLVLPSGFIMELNNCYYVPAMSRNIISA 464
Query: 425 PLLDMDGFHF 454
L +G+ F
Sbjct: 465 SCLMTEGYKF 474
>emb|CAN67912.1| hypothetical protein VITISV_004101 [Vitis vinifera]
Length = 1012
Score = 58.2 bits (139), Expect(2) = 1e-09
Identities = 30/73 (41%), Positives = 41/73 (56%)
Frame = +2
Query: 245 QGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISI 424
QG S+K+ GE + +GNG V E +G+ L L G + L D +VP TRN+IS+
Sbjct: 274 QGYLTSKKLSKGERTITLGNGIEVEIEAIGSLHLILDIGFIMDLVDTIYVPVFTRNLISV 333
Query: 425 PLLDMDGFHFHFG 463
P LD G+ FG
Sbjct: 334 PRLDSYGYELKFG 346
Score = 30.0 bits (66), Expect(2) = 1e-09
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 154 SKDQCVFCRQKGHWKRDCPKF 216
+K QC FC +KGH RDC F
Sbjct: 224 NKIQCHFCHKKGHKIRDCSGF 244
>emb|CAE05252.2| OSJNBb0115I09.14 [Oryza sativa Japonica Group]
Length = 853
Score = 60.5 bits (145), Expect(2) = 3e-09
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = +2
Query: 245 QGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISI 424
QG R +R GE LRV +GA + VG L L SG+ L+LHD + PS+ RN+IS+
Sbjct: 376 QGFRSVRTLRKGERILRVADGAEIKVMAVGELHLRLLSGNNLLLHDVLYAPSVKRNLISV 435
Query: 425 PLLDMDGFHFHF 460
+L G+ + F
Sbjct: 436 MVLTNSGYDYDF 447
Score = 26.2 bits (56), Expect(2) = 3e-09
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Frame = +1
Query: 103 NAVALKPKGGTHK-KPDISKDQ-------CVFCRQKGHWKRDCPKF 216
N + + G HK K + Q C FC+ +GH +R+C F
Sbjct: 308 NTPSTQASNGAHKGKAQVPAGQNSAGKFFCKFCKAEGHAQRNCEGF 353
>gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1407
Score = 66.2 bits (160), Expect = 4e-09
Identities = 31/73 (42%), Positives = 45/73 (61%)
Frame = +2
Query: 245 QGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISI 424
QG + R ++ GE +RV NG E +G F L L +G +L LHD +VPS+ RN++S+
Sbjct: 336 QGFAMRRTLKRGERRIRVANGVETEVEAIGDFTLTLHTGFKLQLHDVLYVPSMKRNLVSV 395
Query: 425 PLLDMDGFHFHFG 463
LD DG++ FG
Sbjct: 396 SRLDNDGYYCTFG 408
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 66.2 bits (160), Expect = 4e-09
Identities = 33/72 (45%), Positives = 46/72 (63%)
Frame = +2
Query: 239 QAQGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNII 418
+ +GL SR + GEVD+ VGNGA V A VGT L LPSG L L++CY + ++ +N+I
Sbjct: 200 KTKGLKRSRNLARGEVDIHVGNGASVVAVAVGTMPLSLPSGLVLELNNCYCILALCKNVI 259
Query: 419 SIPLLDMDGFHF 454
S L +G+ F
Sbjct: 260 SASCLQAEGYGF 271
>emb|CAN75475.1| hypothetical protein VITISV_006889 [Vitis vinifera]
Length = 1028
Score = 57.4 bits (137), Expect(2) = 7e-09
Identities = 32/73 (43%), Positives = 40/73 (54%)
Frame = +2
Query: 245 QGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISI 424
QG SR GE + VGNG + A +G FRL L SG L L + + VPS RN+IS+
Sbjct: 247 QGCLRSRMPTDGERYIYVGNGNKAAVNAIGLFRLQLDSGCTLDLEETFVVPSFKRNLISV 306
Query: 425 PLLDMDGFHFHFG 463
LD G+ FG
Sbjct: 307 SCLDKFGYCCSFG 319
Score = 28.1 bits (61), Expect(2) = 7e-09
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 157 KDQCVFCRQKGHWKRDCPKF 216
K C FC++ GH K+ C K+
Sbjct: 208 KITCFFCKKAGHMKKTCTKY 227
>emb|CAN72447.1| hypothetical protein VITISV_027001 [Vitis vinifera]
Length = 1051
Score = 55.1 bits (131), Expect(2) = 9e-09
Identities = 29/72 (40%), Positives = 42/72 (58%)
Frame = +2
Query: 245 QGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISI 424
QG SR GE + VGNG +VA + +G F+L + S + L L + + VPS RN+IS+
Sbjct: 217 QGCLRSRMPTDGERYIYVGNGNKVAVKAIGIFKLQIDSRYTLDLEETFEVPSFRRNLISV 276
Query: 425 PLLDMDGFHFHF 460
LD G+ + F
Sbjct: 277 SCLDKFGYCYSF 288
Score = 30.0 bits (66), Expect(2) = 9e-09
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 106 AVALKPKGGTHKKPDISKDQCVFCRQKGHWKRDCPKF 216
AV+ K KK D + C FC++ GH K+ C K+
Sbjct: 162 AVSKTSKQKVQKKQD-KEITCFFCKKAGHMKKTCTKY 197
>gb|AAK70633.1|AC091238_11 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|21321753|gb|AAM47288.1|AC122146_7 Putative gag-pol
polyprotein [Oryza sativa Japonica Group]
gi|31430568|gb|AAP52462.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1225
Score = 64.7 bits (156), Expect = 1e-08
Identities = 31/73 (42%), Positives = 44/73 (60%)
Frame = +2
Query: 245 QGLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISI 424
QG + R +R GE +RV NG E +G F L L +G +L LHD +VPS+ RN++S+
Sbjct: 336 QGFAMRRTLRRGERRIRVANGVETEVEAIGDFTLTLHTGFKLQLHDVLYVPSMKRNLVSV 395
Query: 425 PLLDMDGFHFHFG 463
LD G++ FG
Sbjct: 396 SRLDNGGYYCTFG 408
>emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera]
Length = 1180
Score = 55.1 bits (131), Expect(2) = 3e-08
Identities = 28/71 (39%), Positives = 43/71 (60%)
Frame = +2
Query: 248 GLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISIP 427
G +RK + E L +GN + VGT+RL L +GHR+ L + ++VPSI+RN++S+
Sbjct: 281 GFLTTRKPKESEKFLYMGNRLKXEVVAVGTYRLLLETGHRMDLLNTFYVPSISRNLVSLS 340
Query: 428 LLDMDGFHFHF 460
LD G+ F
Sbjct: 341 KLDATGYXVLF 351
Score = 28.5 bits (62), Expect(2) = 3e-08
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 166 CVFCRQKGHWKRDCPK 213
C FC +KGH K+DC K
Sbjct: 236 CYFCGKKGHVKKDCIK 251
>emb|CAN83623.1| hypothetical protein VITISV_010870 [Vitis vinifera]
Length = 1601
Score = 54.7 bits (130), Expect(2) = 4e-08
Identities = 31/72 (43%), Positives = 40/72 (55%)
Frame = +2
Query: 248 GLSDSRKVRPGEVDLRVGNGARVAAERVGTFRLDLPSGHRLVLHDCYFVPSITRNIISIP 427
G RK E + VG+G V E +G FRL L SG+ L L D + VPS RN+IS+
Sbjct: 618 GCLSYRKPSDAERCIYVGDGQSVEVEAIGHFRLLLKSGYFLDLIDTFIVPSFRRNLISVS 677
Query: 428 LLDMDGFHFHFG 463
+LD G+ FG
Sbjct: 678 VLDKSGYCCSFG 689
Score = 28.1 bits (61), Expect(2) = 4e-08
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 130 GTHKKPDISKDQCVFCRQKGHWKRDCPKF 216
G +K + C FC + GH K++C K+
Sbjct: 576 GPEQKKXKVEVTCFFCNKPGHTKKECTKY 604