BLASTX nr result
ID: Mentha23_contig00025555
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha23_contig00025555
(452 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006362977.1| PREDICTED: U1 small nuclear ribonucleoprotei... 109 5e-38
ref|NP_001234106.1| U1 small nuclear ribonucleoprotein C-like [S... 109 7e-38
gb|EYU40704.1| hypothetical protein MIMGU_mgv1a020156mg [Mimulus... 115 3e-37
gb|EYU38107.1| hypothetical protein MIMGU_mgv1a014416mg [Mimulus... 115 3e-37
ref|XP_002304170.1| proline-rich family protein [Populus trichoc... 92 4e-32
ref|XP_004148886.1| PREDICTED: U1 small nuclear ribonucleoprotei... 96 2e-31
ref|XP_006444209.1| hypothetical protein CICLE_v10022350mg [Citr... 96 3e-30
ref|XP_006288716.1| hypothetical protein CARUB_v10002027mg [Caps... 93 8e-26
ref|NP_567250.1| C2H2 and C2HC zinc finger-containing protein [A... 93 1e-25
ref|XP_006396542.1| hypothetical protein EUTSA_v10028986mg [Eutr... 93 1e-25
gb|AAO44073.1| At4g03120 [Arabidopsis thaliana] gi|110743941|dbj... 91 4e-25
ref|XP_002874880.1| hypothetical protein ARALYDRAFT_911890 [Arab... 90 1e-23
gb|AFK36549.1| unknown [Lotus japonicus] 93 3e-22
ref|XP_006855383.1| hypothetical protein AMTR_s00057p00133180 [A... 97 1e-19
gb|EYU45591.1| hypothetical protein MIMGU_mgv1a014399mg [Mimulus... 91 1e-19
ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Sela... 91 1e-19
ref|XP_003572258.1| PREDICTED: uncharacterized protein LOC100822... 95 1e-19
gb|AAD14440.1| putative C-type U1 snRNP [Arabidopsis thaliana] g... 93 2e-18
ref|XP_006648524.1| PREDICTED: U1 small nuclear ribonucleoprotei... 94 3e-18
ref|XP_004954569.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuc... 94 3e-18
>ref|XP_006362977.1| PREDICTED: U1 small nuclear ribonucleoprotein C-like isoform X1
[Solanum tuberosum] gi|565394667|ref|XP_006362978.1|
PREDICTED: U1 small nuclear ribonucleoprotein C-like
isoform X2 [Solanum tuberosum]
Length = 197
Score = 109 bits (272), Expect(2) = 5e-38
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLGAFRP 251
TYLTHDSPSVRKQHNAGYKHK NVR+YYQQ+EAQLNQSLIDQKVKEHLGAFRP
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKGNVRTYYQQFEAQLNQSLIDQKVKEHLGAFRP 63
Score = 74.3 bits (181), Expect(2) = 5e-38
Identities = 33/45 (73%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Frame = +2
Query: 293 PSFRPPVLPRPMPGHPGYAPMP-PHMVAPPGAPHPGQMNGFQRPV 424
P RPP+LPRPMPG PGYAP P P M+APPGAP PGQ+N QRPV
Sbjct: 99 PGMRPPMLPRPMPGLPGYAPPPMPQMLAPPGAPMPGQVNNMQRPV 143
>ref|NP_001234106.1| U1 small nuclear ribonucleoprotein C-like [Solanum lycopersicum]
gi|62751087|dbj|BAD95791.1| similar to u1 small nuclear
ribonucleoprotein C [Solanum lycopersicum]
Length = 197
Score = 109 bits (272), Expect(2) = 7e-38
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLGAFRP 251
TYLTHDSPSVRKQHNAGYKHK NVR+YYQQ+EAQLNQSLIDQKVKEHLGAFRP
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKGNVRTYYQQFEAQLNQSLIDQKVKEHLGAFRP 63
Score = 73.9 bits (180), Expect(2) = 7e-38
Identities = 33/44 (75%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Frame = +2
Query: 293 PSFRPPVLPRPMPGHPGYAPMP-PHMVAPPGAPHPGQMNGFQRP 421
P RPPVLPRPMPG PGYAP P P M+APPGAP PGQ+N QRP
Sbjct: 99 PGMRPPVLPRPMPGLPGYAPPPMPQMLAPPGAPMPGQVNNMQRP 142
>gb|EYU40704.1| hypothetical protein MIMGU_mgv1a020156mg [Mimulus guttatus]
Length = 190
Score = 115 bits (287), Expect(2) = 3e-37
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLGAFRPP 254
TYLTHDSPSVRKQHNAGYKHKANVR+YYQQYEAQLNQSLIDQKVKEHLGAFRPP
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRTYYQQYEAQLNQSLIDQKVKEHLGAFRPP 64
Score = 65.9 bits (159), Expect(2) = 3e-37
Identities = 36/51 (70%), Positives = 37/51 (72%), Gaps = 5/51 (9%)
Frame = +2
Query: 284 GQFP---SFRPPVLPRPMPGHPG-YAP-MPPHMVAPPGAPHPGQMNGFQRP 421
GQ+P FRPPVLPRP PG PG YAP P MV PPGAP PGQMNG QRP
Sbjct: 85 GQYPLGMQFRPPVLPRP-PGAPGGYAPPQMPQMVLPPGAPMPGQMNGLQRP 134
>gb|EYU38107.1| hypothetical protein MIMGU_mgv1a014416mg [Mimulus guttatus]
Length = 190
Score = 115 bits (287), Expect(2) = 3e-37
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLGAFRPP 254
TYLTHDSPSVRKQHNAGYKHKANVR+YYQQYEAQLNQSLIDQKVKEHLGAFRPP
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRTYYQQYEAQLNQSLIDQKVKEHLGAFRPP 64
Score = 65.9 bits (159), Expect(2) = 3e-37
Identities = 36/51 (70%), Positives = 37/51 (72%), Gaps = 5/51 (9%)
Frame = +2
Query: 284 GQFP---SFRPPVLPRPMPGHPG-YAP-MPPHMVAPPGAPHPGQMNGFQRP 421
GQ+P FRPPVLPRP PG PG YAP P MV PPGAP PGQMNG QRP
Sbjct: 85 GQYPLGMQFRPPVLPRP-PGAPGGYAPPQMPQMVLPPGAPMPGQMNGLQRP 134
>ref|XP_002304170.1| proline-rich family protein [Populus trichocarpa]
gi|222841602|gb|EEE79149.1| proline-rich family protein
[Populus trichocarpa]
Length = 202
Score = 92.4 bits (228), Expect(2) = 4e-32
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVR YYQQ+E Q QS+IDQ++KEHLG
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSIIDQRIKEHLG 59
Score = 71.6 bits (174), Expect(2) = 4e-32
Identities = 35/51 (68%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Frame = +2
Query: 290 FPSFRPPVLPRPMPGHPGY--APMPPHMVAPPGAPH-PGQMNGFQRPVTAL 433
FP RPPVLPRPMPG PGY PM P M+APPGAP PGQMNG RP T +
Sbjct: 100 FPGMRPPVLPRPMPGAPGYMNPPMMPPMMAPPGAPSLPGQMNGIPRPPTMI 150
>ref|XP_004148886.1| PREDICTED: U1 small nuclear ribonucleoprotein C-like [Cucumis
sativus] gi|449491514|ref|XP_004158922.1| PREDICTED: U1
small nuclear ribonucleoprotein C-like [Cucumis sativus]
Length = 197
Score = 95.5 bits (236), Expect(2) = 2e-31
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVRSYYQQ+E Q QSLIDQ++KEHLG
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLG 59
Score = 66.2 bits (160), Expect(2) = 2e-31
Identities = 31/48 (64%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Frame = +2
Query: 284 GQFPSFRPPVLPRPMPGHPGYAPMP--PHMVAPPGAPHPGQMNGFQRP 421
G P RPPVLPRP+PG PGY P P P M+APPGAP PGQ+N RP
Sbjct: 96 GLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSRP 143
>ref|XP_006444209.1| hypothetical protein CICLE_v10022350mg [Citrus clementina]
gi|568852371|ref|XP_006479851.1| PREDICTED: U1 small
nuclear ribonucleoprotein C-like [Citrus sinensis]
gi|557546471|gb|ESR57449.1| hypothetical protein
CICLE_v10022350mg [Citrus clementina]
Length = 197
Score = 95.5 bits (236), Expect(2) = 3e-30
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVRSYYQQ+E Q QSLIDQ++KEHLG
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLG 59
Score = 62.4 bits (150), Expect(2) = 3e-30
Identities = 31/46 (67%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Frame = +2
Query: 293 PSFRPPVLPRPMPGHPGY--APMPPHMVAPPGAPH-PGQMNGFQRP 421
P RPPVLPRP P PGY AP P M+APPGAP PGQ+NGF RP
Sbjct: 100 PGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRP 145
>ref|XP_006288716.1| hypothetical protein CARUB_v10002027mg [Capsella rubella]
gi|482557422|gb|EOA21614.1| hypothetical protein
CARUB_v10002027mg [Capsella rubella]
Length = 193
Score = 93.2 bits (230), Expect(2) = 8e-26
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVR YYQQ+E Q QSLIDQ++KEHLG
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLG 59
Score = 49.7 bits (117), Expect(2) = 8e-26
Identities = 30/53 (56%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Frame = +2
Query: 284 GQFP-SFRPPVLPRPM-PGHPGYAPMPP----HMVAPPGAP-HPGQMNGFQRP 421
G P RPPVLPRPM PG PG MPP M+APPGAP P NG RP
Sbjct: 88 GSMPMGMRPPVLPRPMMPGMPGQGYMPPPGVPQMMAPPGAPLPPPPQNGILRP 140
>ref|NP_567250.1| C2H2 and C2HC zinc finger-containing protein [Arabidopsis thaliana]
gi|75217907|sp|Q56XE4.1|RU1C_ARATH RecName: Full=U1
small nuclear ribonucleoprotein C; Short=U1 snRNP C;
Short=U1-C; Short=U1C gi|62320807|dbj|BAD93742.1|
putative C-type U1 snRNP [Arabidopsis thaliana]
gi|332656876|gb|AEE82276.1| C2H2 and C2HC zinc
finger-containing protein [Arabidopsis thaliana]
Length = 207
Score = 93.2 bits (230), Expect(2) = 1e-25
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVR YYQQ+E Q QSLIDQ++KEHLG
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLG 59
Score = 49.3 bits (116), Expect(2) = 1e-25
Identities = 28/50 (56%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +2
Query: 284 GQFP-SFRPPVLPRPMPGHPGYAPMP--PHMVAPPGAP-HPGQMNGFQRP 421
G P RPPVLPRPM GY P P P M+APPGAP P NG RP
Sbjct: 88 GSMPMGMRPPVLPRPMMPPQGYMPPPGVPQMMAPPGAPLPPPPQNGILRP 137
>ref|XP_006396542.1| hypothetical protein EUTSA_v10028986mg [Eutrema salsugineum]
gi|557097559|gb|ESQ37995.1| hypothetical protein
EUTSA_v10028986mg [Eutrema salsugineum]
Length = 193
Score = 93.2 bits (230), Expect(2) = 1e-25
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVR YYQQ+E Q QSLIDQ++KEHLG
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLG 59
Score = 49.3 bits (116), Expect(2) = 1e-25
Identities = 28/50 (56%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +2
Query: 284 GQFP-SFRPPVLPRPMPGHPGYAPMP--PHMVAPPGAP-HPGQMNGFQRP 421
G P RPPVLPRPM GY P P P M+APPGAP P NG RP
Sbjct: 88 GSMPMGMRPPVLPRPMMPGQGYMPPPGVPQMMAPPGAPLPPPPQNGILRP 137
>gb|AAO44073.1| At4g03120 [Arabidopsis thaliana] gi|110743941|dbj|BAE99804.1|
putative C-type U1 snRNP [Arabidopsis thaliana]
Length = 207
Score = 91.3 bits (225), Expect(2) = 4e-25
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVR Y+QQ+E Q QSLIDQ++KEHLG
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRIYHQQFEEQQTQSLIDQRIKEHLG 59
Score = 49.3 bits (116), Expect(2) = 4e-25
Identities = 28/50 (56%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +2
Query: 284 GQFP-SFRPPVLPRPMPGHPGYAPMP--PHMVAPPGAP-HPGQMNGFQRP 421
G P RPPVLPRPM GY P P P M+APPGAP P NG RP
Sbjct: 88 GSMPMGMRPPVLPRPMMPPQGYMPPPGVPQMMAPPGAPLPPPPQNGILRP 137
>ref|XP_002874880.1| hypothetical protein ARALYDRAFT_911890 [Arabidopsis lyrata subsp.
lyrata] gi|297320717|gb|EFH51139.1| hypothetical protein
ARALYDRAFT_911890 [Arabidopsis lyrata subsp. lyrata]
Length = 194
Score = 89.7 bits (221), Expect(2) = 1e-23
Identities = 40/48 (83%), Positives = 44/48 (91%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHL 236
TYLTHDSPSVRKQHNAGYKHKANVR YYQQ+E Q QSLIDQ++K+HL
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKQHL 58
Score = 45.8 bits (107), Expect(2) = 1e-23
Identities = 25/43 (58%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +2
Query: 302 RPPVLPRPMPGHPGYAPMP--PHMVAPPGAP-HPGQMNGFQRP 421
RPPVLPRPM GY P P M+APPGAP P NG RP
Sbjct: 95 RPPVLPRPMMPGQGYMPPQGVPQMMAPPGAPLPPPPQNGILRP 137
>gb|AFK36549.1| unknown [Lotus japonicus]
Length = 192
Score = 93.2 bits (230), Expect(2) = 3e-22
Identities = 41/49 (83%), Positives = 46/49 (93%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHN+GYKHKANVR+YYQQ+E Q QSLIDQ++KEHLG
Sbjct: 11 TYLTHDSPSVRKQHNSGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLG 59
Score = 37.4 bits (85), Expect(2) = 3e-22
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 16/55 (29%)
Frame = +2
Query: 305 PPVLPRP-----MPGH----------PGYAPMPPHMVAPPGAPH-PGQMNGFQRP 421
PP+LP P MPG+ PG P+ P PGAPH PGQ+N RP
Sbjct: 82 PPLLPMPQPRFPMPGNVQMPGGQPLMPGMRPLMPLPRPVPGAPHVPGQLNAIPRP 136
>ref|XP_006855383.1| hypothetical protein AMTR_s00057p00133180 [Amborella trichopoda]
gi|548859149|gb|ERN16850.1| hypothetical protein
AMTR_s00057p00133180 [Amborella trichopoda]
Length = 224
Score = 97.1 bits (240), Expect(2) = 1e-19
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVRSYYQQ+E Q QSLIDQKVKEHLG
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQKVKEHLG 59
Score = 25.0 bits (53), Expect(2) = 1e-19
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = +2
Query: 305 PPVLPRP----MPGHPGYAPM-PPHMVAPPGAPHPG 397
PPVLP P P +P PM P ++ PP + PG
Sbjct: 92 PPVLPIPSTSQAPINPSMMPMLRPPLLPPPTSGAPG 127
>gb|EYU45591.1| hypothetical protein MIMGU_mgv1a014399mg [Mimulus guttatus]
gi|604347340|gb|EYU45592.1| hypothetical protein
MIMGU_mgv1a014399mg [Mimulus guttatus]
Length = 191
Score = 90.5 bits (223), Expect(2) = 1e-19
Identities = 39/49 (79%), Positives = 45/49 (91%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHN+GYKHKAN+RSYYQ++E Q Q L+DQK+KEHLG
Sbjct: 11 TYLTHDSPSVRKQHNSGYKHKANIRSYYQKFEEQQTQILLDQKIKEHLG 59
Score = 31.6 bits (70), Expect(2) = 1e-19
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +2
Query: 338 PGYAP----MPPHMVAPPGAPHPGQMNGFQRPVTAL 433
PG P MPPHM+ PGA HP G + PV L
Sbjct: 79 PGARPRLPVMPPHMLPYPGAMHPHFPPGIRPPVLPL 114
>ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
gi|300153516|gb|EFJ20154.1| hypothetical protein
SELMODRAFT_418544 [Selaginella moellendorffii]
Length = 675
Score = 91.3 bits (225), Expect(2) = 1e-19
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEH 233
TYLTHDSPSVRKQHNAGYKHKANVR+YYQQ+E Q QS+IDQKVKEH
Sbjct: 447 TYLTHDSPSVRKQHNAGYKHKANVRAYYQQFEEQQTQSIIDQKVKEH 493
Score = 30.4 bits (67), Expect(2) = 1e-19
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +2
Query: 308 PVLPRPMPGHPGYAPMPPHMVAPPGAPHPGQMNGFQRP 421
PVL RP G PG +P P P HPG G P
Sbjct: 507 PVLSRPGMGLPGSSPAPMIQPMRPPVMHPGAPGGGYPP 544
>ref|XP_003572258.1| PREDICTED: uncharacterized protein LOC100822246 [Brachypodium
distachyon]
Length = 211
Score = 94.7 bits (234), Expect(2) = 1e-19
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVRSYYQQ+E Q QSL+DQ++KEHLG
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLLDQRIKEHLG 59
Score = 26.9 bits (58), Expect(2) = 1e-19
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +2
Query: 284 GQFPSFRPPVLPRP-----MPGHPGYAPMPPHMVAPPGAP-HPG 397
G P R P+LP P P PG P ++ PGAP +PG
Sbjct: 79 GNVPRPRLPILPTPMMPHGFPQQPGGPFARPPILPVPGAPGYPG 122
>gb|AAD14440.1| putative C-type U1 snRNP [Arabidopsis thaliana]
gi|7270182|emb|CAB77797.1| putative C-type U1 snRNP
[Arabidopsis thaliana]
Length = 112
Score = 93.2 bits (230), Expect(2) = 2e-18
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVR YYQQ+E Q QSLIDQ++KEHLG
Sbjct: 11 TYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLG 59
Score = 24.6 bits (52), Expect(2) = 2e-18
Identities = 11/16 (68%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Frame = +2
Query: 284 GQFP-SFRPPVLPRPM 328
G P RPPVLPRPM
Sbjct: 88 GSMPMGMRPPVLPRPM 103
>ref|XP_006648524.1| PREDICTED: U1 small nuclear ribonucleoprotein C-1-like [Oryza
brachyantha]
Length = 226
Score = 94.4 bits (233), Expect(2) = 3e-18
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVR+YYQQ+E Q QSLIDQ++KEHLG
Sbjct: 26 TYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLG 74
Score = 23.1 bits (48), Expect(2) = 3e-18
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Frame = +2
Query: 284 GQFPSFRPPVLPRPMPGHPGYAPMPPHMVAPPG-------APHPG 397
G P R P+LP P G P P P PG AP PG
Sbjct: 94 GGVPRPRLPILPTP--GMPHGVPQAPGAPLMPGMRPPILPAPIPG 136
>ref|XP_004954569.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
C-1-like [Setaria italica]
Length = 265
Score = 94.4 bits (233), Expect(2) = 3e-18
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = +3
Query: 93 TYLTHDSPSVRKQHNAGYKHKANVRSYYQQYEAQLNQSLIDQKVKEHLG 239
TYLTHDSPSVRKQHNAGYKHKANVR+YYQQ+E Q QSLIDQ++KEHLG
Sbjct: 49 TYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLG 97
Score = 22.7 bits (47), Expect(2) = 3e-18
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Frame = +2
Query: 302 RPPVLPRPMPGHPGYAPMPPHM-----VAPPGAPHPGQMNG 409
R P+LP P G P P P V PP P PG G
Sbjct: 123 RLPILPTP--GMPHGFPQAPGAPLMPGVRPPILPAPGYPGG 161