BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha23_contig00020707
         (908 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   140   2e-49
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   104   2e-24
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                 94   7e-22
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]                94   7e-22
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]         94   1e-21
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...    93   2e-21
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      93   2e-21
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...    84   5e-21
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      89   1e-20
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]          91   2e-20
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]            91   2e-20
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...    90   5e-20
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    88   4e-19
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...    88   4e-19
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...    90   3e-18
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         78   4e-17
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...    88   4e-17
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...    88   4e-17
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]      83   6e-17
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...    87   8e-17

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  140 bits (352), Expect(2) = 2e-49
 Identities = 71/105 (67%), Positives = 87/105 (82%)
 Frame = -1

Query: 623 REYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISLS 444
           RE+F+TY+Q+DGG++SMA++ V KVVG GSI+IRT DG FCTL+EV HVP MTKNLISLS
Sbjct: 293 REWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLS 352

Query: 443 LLDIKGFSFKG*CGAMYVRKGSKVILTGLKRGTLYTLQGSTMTGT 309
           LLD KGFS+ G  G + V KGS +IL G+ RGTLY LQGST+TG+
Sbjct: 353 LLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGS 397



 Score = 83.6 bits (205), Expect(2) = 2e-49
 Identities = 39/75 (52%), Positives = 44/75 (58%)
 Frame = -2

Query: 844 DICNYCKEPGHWKNDCLXXXXXXXXXXXXXXXXXXXXADTNSEEDLVLVAKEQSHRNDVW 665
           D+CNYCKE GHWK DC                      DTNSEED+ LVA E +H +DVW
Sbjct: 223 DVCNYCKEKGHWKFDC---PKKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVW 279

Query: 664 VLDSRASYHLCPNTE 620
           VLDS ASYH+CP  E
Sbjct: 280 VLDSGASYHICPRRE 294


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  104 bits (259), Expect(2) = 2e-24
 Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ + GGNV M DN   KV G+G+I+I+  DG   TLS+V H+P + +NLISL
Sbjct: 255 NRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNLISL 314

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
           S LD KG+ + G  G + V KGS V++   +K   LY LQG+T+ G    VT
Sbjct: 315 STLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTIVGNVAAVT 366



 Score = 35.4 bits (80), Expect(2) = 2e-24
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDCLXXXXXXXXXXXXXXXXXXXXA-------DTNSEEDLVLVAKEQSH 680
           C YCK  GH  +DC                             D   + +L++       
Sbjct: 178 CKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQ 237

Query: 679 RNDVWVLDSRASYHLCPNTE 620
            +D W+LD+  +YH+CPN +
Sbjct: 238 TSDEWLLDTGCTYHMCPNRD 257


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score = 94.4 bits (233), Expect(2) = 7e-22
 Identities = 46/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ + GG V M D+   +V GIG+++I+  DG   TLS+V H+P + ++LISL
Sbjct: 298 NRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISL 357

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD KG+ + G  G + V KGS V++   +K   LY LQG+T+ G    V+
Sbjct: 358 CTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVS 409



 Score = 37.0 bits (84), Expect(2) = 7e-22
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDCLXXXXXXXXXXXXXXXXXXXXA-------DTNSEEDLVLVAKEQSH 680
           C YCK  GH  + C                             D  S+ +L++     + 
Sbjct: 221 CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQ 280

Query: 679 RNDVWVLDSRASYHLCPNTE 620
            +D W+LD+  +YH+CPN +
Sbjct: 281 TSDQWILDTACTYHMCPNRD 300


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score = 94.4 bits (233), Expect(2) = 7e-22
 Identities = 46/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ + GG V M D+   +V GIG+++I+  DG   TLS+V H+P + ++LISL
Sbjct: 130 NRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISL 189

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD KG+ + G  G + V KGS V++   +K   LY LQG+T+ G    V+
Sbjct: 190 CTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVS 241



 Score = 37.0 bits (84), Expect(2) = 7e-22
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDCLXXXXXXXXXXXXXXXXXXXXA-------DTNSEEDLVLVAKEQSH 680
           C YCK  GH  + C                             D  S+ +L++     + 
Sbjct: 53  CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQ 112

Query: 679 RNDVWVLDSRASYHLCPNTE 620
            +D W+LD+  +YH+CPN +
Sbjct: 113 TSDQWILDTACTYHMCPNRD 132


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score = 94.0 bits (232), Expect(2) = 1e-21
 Identities = 46/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ + GG V M D+   +V GIG+++I+  DG   TLS+V H+P + ++LISL
Sbjct: 313 NRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISL 372

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD KG+ + G  G + V KGS V++   +K   LY LQG+T+ G    V+
Sbjct: 373 CTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVS 424



 Score = 37.0 bits (84), Expect(2) = 1e-21
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDCLXXXXXXXXXXXXXXXXXXXXA-------DTNSEEDLVLVAKEQSH 680
           C YCK  GH  + C                             D  S+ +L++     + 
Sbjct: 236 CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 295

Query: 679 RNDVWVLDSRASYHLCPNTE 620
            +D W+LD+  +YH+CPN +
Sbjct: 296 TSDQWILDTACTYHMCPNRD 315


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1312

 Score = 92.8 bits (229), Expect(2) = 2e-21
 Identities = 46/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ L GG V M D+   +V GIG+++I+  DG   TLS+V H+P + ++LISL
Sbjct: 348 NRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISL 407

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD KG+ + G  G + V KGS V++   +K   LY L+G+T+ G    V+
Sbjct: 408 CTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVS 459



 Score = 37.0 bits (84), Expect(2) = 2e-21
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDCLXXXXXXXXXXXXXXXXXXXXA-------DTNSEEDLVLVAKEQSH 680
           C YCK  GH  ++C                             D  S+ +L++     + 
Sbjct: 271 CKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQ 330

Query: 679 RNDVWVLDSRASYHLCPNTE 620
            +D W+LD+  +YH+CPN +
Sbjct: 331 TSDQWILDTAWTYHMCPNRD 350


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 92.8 bits (229), Expect(2) = 2e-21
 Identities = 46/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ L GG V M D+   +V GIG+++I+  DG   TLS+V H+P + ++LISL
Sbjct: 348 NRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISL 407

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD KG+ + G  G + V KGS V++   +K   LY L+G+T+ G    V+
Sbjct: 408 CTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVS 459



 Score = 37.0 bits (84), Expect(2) = 2e-21
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDCLXXXXXXXXXXXXXXXXXXXXA-------DTNSEEDLVLVAKEQSH 680
           C YCK  GH  ++C                             D  S+ +L++     + 
Sbjct: 271 CKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQ 330

Query: 679 RNDVWVLDSRASYHLCPNTE 620
            +D W+LD+  +YH+CPN +
Sbjct: 331 TSDQWILDTAWTYHMCPNRD 350


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score = 84.3 bits (207), Expect(2) = 5e-21
 Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 4/173 (2%)
 Frame = -1

Query: 623 REYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISLS 444
           R++F  +++LDGG V M ++   K VGIGSI++R  DG    L +V +VP++ KNLISL 
Sbjct: 239 RDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLG 298

Query: 443 LLDIKGFSFKG*CGAMYVRKGSKVILTGLKRGTLYTLQGSTMTGTTGNVTSC*LPNVGQI 264
            L+ KG       G +    G+ V+L G+ +  LY  QGST+ GT    TS       + 
Sbjct: 299 ALESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGTVAAATSS-----SKK 353

Query: 263 *GRNEKFVHLAL*NASEMRSLFIWH----CNDTSARRSLFICHCNDASARRIQ 117
                K  H+ L +A E +SL I+        T A +  F  HC     RR++
Sbjct: 354 DAEATKLWHMRLGHAGE-KSLQIFTKQGLLKGTKACKLEFCEHCVLGKQRRVK 405



 Score = 44.3 bits (103), Expect(2) = 5e-21
 Identities = 24/72 (33%), Positives = 32/72 (44%)
 Frame = -2

Query: 844 DICNYCKEPGHWKNDCLXXXXXXXXXXXXXXXXXXXXADTNSEEDLVLVAKEQSHRNDVW 665
           D C +C E GHWK DC                     +D  S+  L+ V+   S   D W
Sbjct: 169 DECAFCHEKGHWKKDC--PKLQKKEKVLQDANVAECKSDVESDISLI-VSLSASLYLDEW 225

Query: 664 VLDSRASYHLCP 629
           +LDS  +YH+CP
Sbjct: 226 ILDSGCTYHMCP 237


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 89.0 bits (219), Expect(2) = 1e-20
 Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ + GG V M D+   +V GIG+++I+  DG   TL +V H+P + ++LISL
Sbjct: 222 NRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISL 281

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD KG+ + G  G + V KGS V++   +K   LY L+G+T+ G    V+
Sbjct: 282 CTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVS 333



 Score = 38.1 bits (87), Expect(2) = 1e-20
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDCLXXXXXXXXXXXXXXXXXXXXA-------DTNSEEDLVLVAKEQSH 680
           C YCK  GH  ++C                             D  S+ +L++     + 
Sbjct: 145 CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 204

Query: 679 RNDVWVLDSRASYHLCPNTE 620
            +D W+LD+  +YH+CPN +
Sbjct: 205 TSDQWILDTACTYHMCPNRD 224


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score = 91.3 bits (225), Expect(2) = 2e-20
 Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ + GG V M D+   +V GIG ++I+  DG   TLS+V H+P + ++LISL
Sbjct: 145 NRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISL 204

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD KG+ + G  G + V KGS V++   +K   LY L+G+T+ G    V+
Sbjct: 205 CTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVS 256



 Score = 35.4 bits (80), Expect(2) = 2e-20
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 730 DTNSEEDLVLVAKEQSHRNDVWVLDSRASYHLCPNTE 620
           D  S+ +L++     +  +D W+LD+  +YH+CPN +
Sbjct: 111 DEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRD 147


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score = 91.3 bits (225), Expect(2) = 2e-20
 Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ + GG V M D+   +V GIG ++I+  DG   TLS+V H+P + ++LISL
Sbjct: 145 NRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISL 204

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD KG+ + G  G + V KGS V++   +K   LY L+G+T+ G    V+
Sbjct: 205 CTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVS 256



 Score = 35.4 bits (80), Expect(2) = 2e-20
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 730 DTNSEEDLVLVAKEQSHRNDVWVLDSRASYHLCPNTE 620
           D  S+ +L++     +  +D W+LD+  +YH+CPN +
Sbjct: 111 DEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRD 147


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score = 90.1 bits (222), Expect(2) = 5e-20
 Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ + GG V M D+   +V GIG+++I+  DG   TLS+V H+P + ++LIS 
Sbjct: 279 NRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISF 338

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD KG+ + G  G + V KGS V++   +K   LY L+G+T+ G    V+
Sbjct: 339 CTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVS 390



 Score = 35.0 bits (79), Expect(2) = 5e-20
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 730 DTNSEEDLVLVAKEQSHRNDVWVLDSRASYHLCPNTE 620
           D  S+ +L++     +  +D W+LD+  +YH+CPN +
Sbjct: 245 DEKSDAELLVAYVGCAQTSDQWILDTACTYHMCPNRD 281


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77548751|gb|ABA91548.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 2340

 Score = 88.2 bits (217), Expect(2) = 4e-19
 Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ +  G V M D+   +V GIG+++I+  DG   TLS+V H+P + ++LISL
Sbjct: 520 NRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISL 579

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD KG+ + G  G + V KGS V++   +K   LY L+G+T+ G    V+
Sbjct: 580 CTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVS 631



 Score = 33.9 bits (76), Expect(2) = 4e-19
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = -2

Query: 838 CNYCKEPGH-----WK--NDCLXXXXXXXXXXXXXXXXXXXXADTNSEEDLVLVAKEQSH 680
           C YCK  GH     WK  +                        D  S+ +L++     + 
Sbjct: 443 CKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 502

Query: 679 RNDVWVLDSRASYHLCPNTE 620
            +D W+L++   YH+CPN +
Sbjct: 503 TSDQWILNTACIYHMCPNRD 522


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score = 88.2 bits (217), Expect(2) = 4e-19
 Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ +  G V M D+   +V GIG+++I+  DG   TLS+V H+P + ++LISL
Sbjct: 313 NRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISL 372

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD KG+ + G  G + V KGS V++   +K   LY L+G+T+ G    V+
Sbjct: 373 CTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVS 424



 Score = 33.9 bits (76), Expect(2) = 4e-19
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = -2

Query: 838 CNYCKEPGH-----WK--NDCLXXXXXXXXXXXXXXXXXXXXADTNSEEDLVLVAKEQSH 680
           C YCK  GH     WK  +                        D  S+ +L++     + 
Sbjct: 236 CKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 295

Query: 679 RNDVWVLDSRASYHLCPNTE 620
            +D W+L++   YH+CPN +
Sbjct: 296 TSDQWILNTACIYHMCPNRD 315


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
           Group] gi|22655747|gb|AAN04164.1| Putative
           retrotransposon protein [Oryza sativa Japonica Group]
           gi|31431214|gb|AAP53029.1| retrotransposon protein,
           putative, Ty1-copia subclass, expressed [Oryza sativa
           Japonica Group]
          Length = 1229

 Score = 90.1 bits (222), Expect(2) = 3e-18
 Identities = 47/108 (43%), Positives = 73/108 (67%), Gaps = 2/108 (1%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNV-SMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLIS 450
           +R++FS++K +  G+V  M DN   +++GIGS++I+T DG+  TL +V H+P M +NLIS
Sbjct: 302 NRDWFSSHKSVQNGDVVRMGDNNPREIMGIGSVQIKTHDGMTRTLKDVRHIPGMARNLIS 361

Query: 449 LSLLDIKGFSFKG*CGAMYVRKGSKVILTG-LKRGTLYTLQGSTMTGT 309
           LS LD +G+ + G  G + V KGS V + G +    LY L+GST+ G+
Sbjct: 362 LSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGS 409



 Score = 29.3 bits (64), Expect(2) = 3e-18
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDCLXXXXXXXXXXXXXXXXXXXXADTNSEEDLVLVAK-EQSHRNDVWV 662
           C YCK+  H+  +C                      +++S + LV  A    SH  D W+
Sbjct: 233 CKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSADCLVFFAGCVASH--DEWI 290

Query: 661 LDSRASYHLCPNTESIS 611
           LD+   + +C N +  S
Sbjct: 291 LDTACLFLICINRDWFS 307


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 77.8 bits (190), Expect(2) = 4e-17
 Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
 Frame = -1

Query: 614 FSTYKQLDGGNVSMADNVVFKVVGIGSI-RIRTIDGVFCTLSEVSHVPQMTKNLISLSLL 438
           F  Y+ +DGG V M +N V  +VGI    R R +  +  +L EV H P++ +NLISL +L
Sbjct: 309 FYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLRSLHEVRHAPRLKRNLISLGML 368

Query: 437 DIKGFSFKG*CGAMYVRKGSKVILTGLKRGTLYTLQGSTM 318
           D  G+ FK   G + VRKG+++++ G+    LY LQGS++
Sbjct: 369 DSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSV 408



 Score = 37.7 bits (86), Expect(2) = 4e-17
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDCLXXXXXXXXXXXXXXXXXXXXADTNSEEDLVLVAKEQSHRNDVWVL 659
           C YC++ GH+  DC                          +   +LVA   + +   WV+
Sbjct: 236 CFYCRKEGHYIRDCFEKKKKESQEKSGDAAVASDDGSDGYQSADLLVASNSNTKGQ-WVI 294

Query: 658 DSRASYHLCP 629
           DS  S+HLCP
Sbjct: 295 DSGCSFHLCP 304


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score = 88.2 bits (217), Expect(2) = 4e-17
 Identities = 49/107 (45%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = -1

Query: 623 REYFSTYKQLDGGNV-SMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           R +FS+YK +  G+V  M D+    +VGIGS++I+T DG+  TL  V ++P M++NLISL
Sbjct: 304 RNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISL 363

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVILTG-LKRGTLYTLQGSTMTGT 309
           S LD +G+ + G  G + V KGS V L G L    LY L+G T+TG+
Sbjct: 364 STLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGS 410



 Score = 27.3 bits (59), Expect(2) = 4e-17
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDC--LXXXXXXXXXXXXXXXXXXXXADTNSEEDLVLVAKEQSHRNDVW 665
           C YCK   H  ++C  +                    +D +S + LV+ A   +  +D W
Sbjct: 232 CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG-HDEW 290

Query: 664 VLDSRASYHLC 632
           +LDS  S+H+C
Sbjct: 291 ILDSACSFHIC 301


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score = 88.2 bits (217), Expect(2) = 4e-17
 Identities = 49/107 (45%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = -1

Query: 623 REYFSTYKQLDGGNV-SMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           R +FS+YK +  G+V  M D+    +VGIGS++I+T DG+  TL  V ++P M++NLISL
Sbjct: 304 RNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISL 363

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVILTG-LKRGTLYTLQGSTMTGT 309
           S LD +G+ + G  G + V KGS V L G L    LY L+G T+TG+
Sbjct: 364 STLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGS 410



 Score = 27.3 bits (59), Expect(2) = 4e-17
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDC--LXXXXXXXXXXXXXXXXXXXXADTNSEEDLVLVAKEQSHRNDVW 665
           C YCK   H  ++C  +                    +D +S + LV+ A   +  +D W
Sbjct: 232 CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG-HDEW 290

Query: 664 VLDSRASYHLC 632
           +LDS  S+H+C
Sbjct: 291 ILDSACSFHIC 301


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score = 83.2 bits (204), Expect(2) = 6e-17
 Identities = 41/112 (36%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
 Frame = -1

Query: 626 HREYFSTYKQLDGGNVSMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           +R++F+TY+ + GG V M D+   +V G+ +++I+  DG   TLS+V H+P + ++LISL
Sbjct: 313 NRDWFATYEAVQGGTVLMGDDTPCEVAGVETVQIKMFDGCIRTLSDVRHIPNLKRSLISL 372

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVIL-TGLKRGTLYTLQGSTMTGTTGNVT 294
             LD K + + G  G + V KGS V++   +K   LY ++G+T+ G    V+
Sbjct: 373 CTLDRKVYKYSGGDGILKVTKGSLVVMKADIKSANLYHVRGTTILGNIAAVS 424



 Score = 31.6 bits (70), Expect(2) = 6e-17
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 730 DTNSEEDLVLVAKEQSHRNDVWVLDSRASYHLCPNTE 620
           D  S+ +L++     +  +D W+LD+  +YH+C N +
Sbjct: 279 DEKSDAELLVAYAGCAQTSDQWILDTACTYHMCLNRD 315


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score = 87.0 bits (214), Expect(2) = 8e-17
 Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = -1

Query: 623 REYFSTYKQLDGGNV-SMADNVVFKVVGIGSIRIRTIDGVFCTLSEVSHVPQMTKNLISL 447
           R +FS+YK +  G+V  M D+    +VGIGS++I+T DG+  TL  V ++P M++NLISL
Sbjct: 304 RNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISL 363

Query: 446 SLLDIKGFSFKG*CGAMYVRKGSKVILTG-LKRGTLYTLQGSTMTGT 309
           S LD +G+ + G  G + V KGS V L G +    LY L+G T+TG+
Sbjct: 364 STLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGS 410



 Score = 27.3 bits (59), Expect(2) = 8e-17
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 838 CNYCKEPGHWKNDC--LXXXXXXXXXXXXXXXXXXXXADTNSEEDLVLVAKEQSHRNDVW 665
           C YCK   H  ++C  +                    +D +S + LV+ A   +  +D W
Sbjct: 232 CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG-HDEW 290

Query: 664 VLDSRASYHLC 632
           +LDS  S+H+C
Sbjct: 291 ILDSACSFHIC 301