BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha23_contig00019356
         (664 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU27933.1| hypothetical protein MIMGU_mgv1a003121mg [Mimulus...   263   3e-68
gb|EPS59875.1| hypothetical protein M569_14929 [Genlisea aurea]       240   3e-61
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   187   2e-45
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   187   3e-45
ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ...   158   2e-36
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   158   2e-36
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   157   2e-36
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   156   6e-36
ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phas...   154   2e-35
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...   154   2e-35
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp....   147   2e-33
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   147   2e-33
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th...   147   3e-33
gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]               147   3e-33
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...   146   5e-33
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr...   146   5e-33
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...   144   2e-32
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   143   4e-32
ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein...   142   9e-32
ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Caps...   142   9e-32

>gb|EYU27933.1| hypothetical protein MIMGU_mgv1a003121mg [Mimulus guttatus]
          Length = 606

 Score =  263 bits (673), Expect = 3e-68
 Identities = 152/225 (67%), Positives = 161/225 (71%), Gaps = 6/225 (2%)
 Frame = +3

Query: 6   SQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDREKLSKLTEL 185
           SQVPLKKRLD A                               LYKDEDDREKLSKLTEL
Sbjct: 62  SQVPLKKRLD-ATDRDEDRSSQEGDEDEYDHDRDSDNDSVGSDLYKDEDDREKLSKLTEL 120

Query: 186 EREMILEARATKRSDRDLTEKLKKRKGQDRKG-SPPKAPTRSMRSKAERAGALDELVKRR 362
           EREMILEARATKRSDRDLTEKLKKRKGQDRKG SPPK  TR+MRSKA+RAGALDELVKRR
Sbjct: 121 EREMILEARATKRSDRDLTEKLKKRKGQDRKGSSPPKTHTRNMRSKAQRAGALDELVKRR 180

Query: 363 RESAKGGSGKRYSPVKRRSFAAA-----TLNSPXXXXXXXXXXXXXXXXXXXLADSDDDK 527
           R++AKGGSG RYSPVKRRSFAAA      L+SP                   L DSDDDK
Sbjct: 181 RDAAKGGSGGRYSPVKRRSFAAAAATTTALSSPSRSDSGSHSDDGDSTGDGGLGDSDDDK 240

Query: 528 ISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGCFVRVGI 662
           +S  SKVPTFEDI+EITIRRSKL+KWFMEP+FDELIVGCFVRVGI
Sbjct: 241 VS--SKVPTFEDIKEITIRRSKLSKWFMEPFFDELIVGCFVRVGI 283


>gb|EPS59875.1| hypothetical protein M569_14929 [Genlisea aurea]
          Length = 643

 Score =  240 bits (613), Expect = 3e-61
 Identities = 134/222 (60%), Positives = 153/222 (68%), Gaps = 2/222 (0%)
 Frame = +3

Query: 3   ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDREKLSKLTE 182
           +SQVPLKKR DP                                LYKDE+DREKLSKLTE
Sbjct: 58  SSQVPLKKRFDPTDRDDRSSQDGDEINSNHERDSDNDTIGSD--LYKDEEDREKLSKLTE 115

Query: 183 LEREMILEARATKRSDRDLTEKLKKRKGQDRKGSPPKAPTR-SMRSKAERAGALDELVKR 359
           LEREMILE RATK SDRDLTEKLKKRKG D+K SP KA TR S RSKAERAGALDELVKR
Sbjct: 116 LEREMILEGRATKISDRDLTEKLKKRKGHDKKLSPAKAHTRSSTRSKAERAGALDELVKR 175

Query: 360 RRESAKGGSGK-RYSPVKRRSFAAATLNSPXXXXXXXXXXXXXXXXXXXLADSDDDKISA 536
           RR++ KGG+ + RYSPVKRRSF AATL+SP                   + DSD+DK  +
Sbjct: 176 RRDAVKGGTTRSRYSPVKRRSFTAATLSSPSHSDSRSQSGEGESTGDGGIGDSDEDKTQS 235

Query: 537 ESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGCFVRVGI 662
           +S VPTF+DI+EIT++RSKL KWFMEP+FDELI+GCFV+VGI
Sbjct: 236 QSNVPTFDDIKEITVQRSKLLKWFMEPFFDELIIGCFVKVGI 277


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
           tuberosum]
          Length = 652

 Score =  187 bits (476), Expect = 2e-45
 Identities = 117/241 (48%), Positives = 143/241 (59%), Gaps = 22/241 (9%)
 Frame = +3

Query: 6   SQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDREKLSKLTEL 185
           SQVPLKKRLDP                                LYKD+DDR+KL+++TEL
Sbjct: 62  SQVPLKKRLDPQERDDDHSSHGEGNDGDGYGNESDDDSIGSD-LYKDDDDRQKLAQMTEL 120

Query: 186 EREMILEARATKRSDRDLTEKLKKRKGQDRKGSPPKAPTRSMRSK-------AERAGALD 344
           EREMIL  RA K+SDR L +K+ K + Q RK S P + +R MRS        A+R  AL+
Sbjct: 121 EREMILTDRAAKKSDRSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADRDDALN 180

Query: 345 ELVKRR-------------RESAKGGSGKR-YSPVKRRSFAAATL-NSPXXXXXXXXXXX 479
           E+  +R             R++A+ GSG R YSP+KRRSF AATL +SP           
Sbjct: 181 EIRAKRARQQQDPEGQFKLRDAARKGSGGRGYSPIKRRSFTAATLGSSPTRGESDSHSNE 240

Query: 480 XXXXXXXXLADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGCFVRVG 659
                   + DSDDDK S ES++PTFEDI+EI+IRRSKLAKWFMEP+FDELIVGCFVRVG
Sbjct: 241 GDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELIVGCFVRVG 300

Query: 660 I 662
           I
Sbjct: 301 I 301


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
           [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  187 bits (474), Expect = 3e-45
 Identities = 116/241 (48%), Positives = 143/241 (59%), Gaps = 22/241 (9%)
 Frame = +3

Query: 6   SQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDREKLSKLTEL 185
           SQVPLKKRLDP                                LYKD+DDR+KL+++TEL
Sbjct: 62  SQVPLKKRLDPQERDDDHSSHGEGNDGDGYGNESDDDSIGSD-LYKDDDDRQKLAQMTEL 120

Query: 186 EREMILEARATKRSDRDLTEKLKKRKGQDRKGSPPKAPTRSMRSK-------AERAGALD 344
           EREMIL  RA K+SDR L +K+ K + Q RK S P + +R MRS        A+R  AL+
Sbjct: 121 EREMILTDRAAKKSDRSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADRDDALN 180

Query: 345 ELVKRR-------------RESAKGGSGKR-YSPVKRRSFAAATL-NSPXXXXXXXXXXX 479
           E+  +R             R++A+ GSG R YSP+KRRSF AA+L +SP           
Sbjct: 181 EIRAKRARQQQDPEGQFKLRDAARKGSGSRGYSPIKRRSFTAASLGSSPTRGESDSHSNE 240

Query: 480 XXXXXXXXLADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGCFVRVG 659
                   + DSDDDK S ES++PTFEDI+EI+IRRSKLAKWFMEP+FDELIVGCFVRVG
Sbjct: 241 GDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELIVGCFVRVG 300

Query: 660 I 662
           I
Sbjct: 301 I 301


>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
           gi|590624750|ref|XP_007025692.1| PAF1 complex component
           isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
           PAF1 complex component isoform 1 [Theobroma cacao]
           gi|508781058|gb|EOY28314.1| PAF1 complex component
           isoform 1 [Theobroma cacao]
          Length = 660

 Score =  158 bits (399), Expect = 2e-36
 Identities = 104/249 (41%), Positives = 134/249 (53%), Gaps = 30/249 (12%)
 Frame = +3

Query: 6   SQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLSKL 176
           SQVPLKKRLDPA                                  LYK+EDDR KL+++
Sbjct: 62  SQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQM 121

Query: 177 TELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAPTRSMRSKAERAG-- 335
           TELERE+IL  RA KR D+  TEK++ ++  DR     K +PP   +R +RS A  A   
Sbjct: 122 TELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSADRA 181

Query: 336 -----ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXXXX 461
                AL+EL  +R            R++++G SG R  SPVKR+ F A++L+S      
Sbjct: 182 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSLSSSSQSDS 241

Query: 462 XXXXXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELI 635
                           + DSDDD+       PTF+DI+EITIRRSKLAKWFMEP+F+ELI
Sbjct: 242 ESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEPFFEELI 301

Query: 636 VGCFVRVGI 662
           VGC+VRVGI
Sbjct: 302 VGCYVRVGI 310


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score =  158 bits (399), Expect = 2e-36
 Identities = 105/246 (42%), Positives = 137/246 (55%), Gaps = 27/246 (10%)
 Frame = +3

Query: 6   SQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LYKDEDDREKLSKLT 179
           SQVPLKKRLDP                                  LYKDEDDR KLS++T
Sbjct: 62  SQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEMT 121

Query: 180 ELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG--- 335
           EL+REMIL  RATK+ D++L  K+  K+ KG+    RK SPP + +R MR+ A  A    
Sbjct: 122 ELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSR-MRASARSADRSA 180

Query: 336 ---ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXXXX 470
              AL+EL  +R            RE+++    + +SP KR++F + +L+S         
Sbjct: 181 KNDALNELRAKRLKQQDPEAHRRLREASRNAGPRHFSPPKRKTFTSTSLSSSSHSESESR 240

Query: 471 XXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGC 644
                        +ADSDDD+  A S+ P+F+DI+EITIRRSKLAKWFMEP+F+ELIVGC
Sbjct: 241 SHSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVGC 300

Query: 645 FVRVGI 662
           FVRVGI
Sbjct: 301 FVRVGI 306


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  157 bits (398), Expect = 2e-36
 Identities = 104/248 (41%), Positives = 138/248 (55%), Gaps = 29/248 (11%)
 Frame = +3

Query: 6   SQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLSKL 176
           SQVPLKKRLDP                                   LYK+EDDR KL+++
Sbjct: 62  SQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQM 121

Query: 177 TELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAPTRSMRSKAERAG-- 335
           +ELEREMIL  RA K+ D++LTE+++ ++  +R     K +PP   +R +R+ A  A   
Sbjct: 122 SELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADRA 181

Query: 336 -----ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXXXX 461
                AL+EL  RR            R++++ GSG R +SP+KR+ F +A+L+S      
Sbjct: 182 AAKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSSESE 241

Query: 462 XXXXXXXXXXXXXX-LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIV 638
                          +ADSDDD     S+ PTF+DIREITIRRSKLAKWFMEP+F+ELIV
Sbjct: 242 SRSHSEDEGSTGDGGMADSDDDG-EPGSQGPTFDDIREITIRRSKLAKWFMEPWFEELIV 300

Query: 639 GCFVRVGI 662
           GCFVRVGI
Sbjct: 301 GCFVRVGI 308


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Glycine max] gi|571466984|ref|XP_006583809.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Glycine max]
          Length = 656

 Score =  156 bits (394), Expect = 6e-36
 Identities = 103/246 (41%), Positives = 135/246 (54%), Gaps = 27/246 (10%)
 Frame = +3

Query: 6   SQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LYKDEDDREKLSKLT 179
           SQVPLKKRLDP                                  LYKDEDDR KLS++T
Sbjct: 62  SQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEMT 121

Query: 180 ELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG--- 335
           EL+REMIL  RATK+ D++L  K+  K+ KG+    RK SPP + +R MR+ A  A    
Sbjct: 122 ELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSR-MRASARSADRSA 180

Query: 336 ---ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXXXX 470
              AL+EL  +R            RE+++    + +SP KR+ F + +L+S         
Sbjct: 181 KNDALNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPPKRKPFTSTSLSSSSHSESESR 240

Query: 471 XXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGC 644
                        + DSDDD+  A S+ P+F+D++EITIRRSKLAKWFMEP+F+ELIVGC
Sbjct: 241 SHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELIVGC 300

Query: 645 FVRVGI 662
           FVRVGI
Sbjct: 301 FVRVGI 306


>ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
           gi|561032714|gb|ESW31293.1| hypothetical protein
           PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  154 bits (389), Expect = 2e-35
 Identities = 103/247 (41%), Positives = 135/247 (54%), Gaps = 28/247 (11%)
 Frame = +3

Query: 6   SQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLSKL 176
           SQVPLKKRLDP+                                  LYKDEDDR KLS++
Sbjct: 62  SQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLSEM 121

Query: 177 TELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG-- 335
           TEL+REMIL  RATK+ D++L  K+  K+ KG+    RK SPP + +R MR+ A  A   
Sbjct: 122 TELQREMILSDRATKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSR-MRASARSADRS 180

Query: 336 ----ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXXX 467
               AL+EL  +R            RE+++    + +SP KR+ F + +L+S        
Sbjct: 181 AKNDALNELRAKRLKQQDPEAHRKLREASRNAGPRHFSPPKRKPFTSTSLSSSSHSESES 240

Query: 468 XXXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVG 641
                         + DSDDD+    S+ P+F+DI+EITIRRSKLAKWFMEP+F+ELIVG
Sbjct: 241 RSHSDDEGSTGDGGIGDSDDDRALTGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVG 300

Query: 642 CFVRVGI 662
           CFVRVGI
Sbjct: 301 CFVRVGI 307


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Cicer arietinum]
          Length = 658

 Score =  154 bits (389), Expect = 2e-35
 Identities = 104/247 (42%), Positives = 136/247 (55%), Gaps = 28/247 (11%)
 Frame = +3

Query: 6   SQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLSKL 176
           SQVPLKKRLDP                                   LYKDEDDR KLS++
Sbjct: 63  SQVPLKKRLDPTERDDDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLSEM 122

Query: 177 TELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG-- 335
           +EL+REMIL  RA+K+ D+ L  K+  K+ KG+     K SPP + +R MR+ A  A   
Sbjct: 123 SELQREMILSDRASKKDDKSLLGKIASKREKGKAIMTGKQSPPLSSSR-MRASARSADRS 181

Query: 336 ----ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXXX 467
               AL+EL  +R            RE+++    +R+SP KR+SF +A L+S        
Sbjct: 182 AKNVALNELRAKRLKQQDPEARRRLREASRNSGPRRFSPPKRKSFTSANLSSSSHSDSDS 241

Query: 468 XXXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVG 641
                         +ADSDDD+  + S+ P+F+DI+EITIRRSKLAKWFMEP+F+ELIVG
Sbjct: 242 RSHSDDEGSTGDGGIADSDDDRALSGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVG 301

Query: 642 CFVRVGI 662
           CFVRVGI
Sbjct: 302 CFVRVGI 308


>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
           gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
           [Arabidopsis lyrata subsp. lyrata]
          Length = 643

 Score =  147 bits (372), Expect = 2e-33
 Identities = 88/201 (43%), Positives = 122/201 (60%), Gaps = 25/201 (12%)
 Frame = +3

Query: 135 LYKDEDDREKLSKLTELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAP 299
           LYK+E+DR+KL+ +TE +REMIL  RA K+ D++ TEKL+ ++  ++     K + P   
Sbjct: 103 LYKNEEDRQKLAGMTEFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPA 162

Query: 300 TRSMRSKAERAG-------ALDELVKRR------------RESAKGGSGKR-YSPVKRRS 419
           +R +RS A  A        AL+EL  +R            R+++KGGSG R +S +KR+ 
Sbjct: 163 SRGVRSSARSADRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSMKRKP 222

Query: 420 FAAATLNSPXXXXXXXXXXXXXXXXXXXLADSDDDKISAESKVPTFEDIREITIRRSKLA 599
            A++ L+S                    + DSDDD+    S VPTFED++EITIRRSKLA
Sbjct: 223 LASSNLSSSSQSDSDSRSQSDDEGSNAGMLDSDDDR----SDVPTFEDVKEITIRRSKLA 278

Query: 600 KWFMEPYFDELIVGCFVRVGI 662
           KW MEP+F+ELIVGCFVRVGI
Sbjct: 279 KWLMEPFFEELIVGCFVRVGI 299


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
           gi|222848649|gb|EEE86196.1| plus-3 domain-containing
           family protein [Populus trichocarpa]
          Length = 662

 Score =  147 bits (372), Expect = 2e-33
 Identities = 89/202 (44%), Positives = 126/202 (62%), Gaps = 26/202 (12%)
 Frame = +3

Query: 135 LYKDEDDREKLSKLTELEREMILEARATKRSDRDLTEKLKKRKGQD-----RKGSPPKAP 299
           LYKDEDDR+KL++++EL+RE+IL  RA K+ D+ LTEK++ ++  D     RK +PP   
Sbjct: 109 LYKDEDDRKKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPS 168

Query: 300 TRSMRSKAERAG-------ALDELVKRR------------RESAKGGSGKR-YSPVKRRS 419
           +R +RS A  A        AL+EL  +R            R+ ++G +G R +S VK+ +
Sbjct: 169 SRGVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNN 228

Query: 420 FAAATLNSPXXXXXXXXXXXXXXXXXXX-LADSDDDKISAESKVPTFEDIREITIRRSKL 596
           F +A+L+S                     +ADSD+D +   SK PT+EDI+EITIRR+KL
Sbjct: 229 FTSASLSSSSSESGSRSHSEDEGSTGDGGMADSDED-VEPGSKGPTYEDIKEITIRRTKL 287

Query: 597 AKWFMEPYFDELIVGCFVRVGI 662
           AKWFMEP+F+ELI+GCFVRVGI
Sbjct: 288 AKWFMEPWFEELIIGCFVRVGI 309


>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
           gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
           78902-80833 [Arabidopsis thaliana]
           gi|332195649|gb|AEE33770.1| Paf1C-like transcription
           factor [Arabidopsis thaliana]
          Length = 643

 Score =  147 bits (371), Expect = 3e-33
 Identities = 87/201 (43%), Positives = 121/201 (60%), Gaps = 25/201 (12%)
 Frame = +3

Query: 135 LYKDEDDREKLSKLTELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAP 299
           LYK+E+DR+KL+ +TE +REMIL  RA K+ D++ TEKL+ ++  ++     K + P   
Sbjct: 103 LYKNEEDRQKLAGMTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPA 162

Query: 300 TRSMRSKAERAG-------ALDELVKRR------------RESAKGGSGKR-YSPVKRRS 419
           +R +RS A  A        AL+EL  +R            R+++KGGSG R +S  KR+ 
Sbjct: 163 SRGVRSSARSADRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKP 222

Query: 420 FAAATLNSPXXXXXXXXXXXXXXXXXXXLADSDDDKISAESKVPTFEDIREITIRRSKLA 599
            A++ L+S                    + DSDDD+    S VPTFED++E+TIRRSKLA
Sbjct: 223 LASSNLSSSSQSDSDSRSQSDDEGSNGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLA 278

Query: 600 KWFMEPYFDELIVGCFVRVGI 662
           KW MEP+F+ELIVGCFVRVGI
Sbjct: 279 KWLMEPFFEELIVGCFVRVGI 299


>gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]
          Length = 643

 Score =  147 bits (371), Expect = 3e-33
 Identities = 87/201 (43%), Positives = 121/201 (60%), Gaps = 25/201 (12%)
 Frame = +3

Query: 135 LYKDEDDREKLSKLTELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAP 299
           LYK+E+DR+KL+ +TE +REMIL  RA K+ D++ TEKL+ ++  ++     K + P   
Sbjct: 103 LYKNEEDRQKLAGMTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPA 162

Query: 300 TRSMRSKAERAG-------ALDELVKRR------------RESAKGGSGKR-YSPVKRRS 419
           +R +RS A  A        AL+EL  +R            R+++KGGSG R +S  KR+ 
Sbjct: 163 SRGVRSSARSADRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKP 222

Query: 420 FAAATLNSPXXXXXXXXXXXXXXXXXXXLADSDDDKISAESKVPTFEDIREITIRRSKLA 599
            A++ L+S                    + DSDDD+    S VPTFED++E+TIRRSKLA
Sbjct: 223 LASSNLSSSSQSDSDSRSQSDDEGSNGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLA 278

Query: 600 KWFMEPYFDELIVGCFVRVGI 662
           KW MEP+F+ELIVGCFVRVGI
Sbjct: 279 KWLMEPFFEELIVGCFVRVGI 299


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus
           notabilis]
          Length = 658

 Score =  146 bits (369), Expect = 5e-33
 Identities = 97/245 (39%), Positives = 132/245 (53%), Gaps = 26/245 (10%)
 Frame = +3

Query: 6   SQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDREKLSKLTEL 185
           SQVPLKKRLDP                                LYKD+DDR KL+++TEL
Sbjct: 62  SQVPLKKRLDPTEMDDDQGSEEEGDDDRGSDREGDSESDVGSDLYKDDDDRRKLAEMTEL 121

Query: 186 EREMILEARATKRSDRDLTEKLKKR---KG---QDRKGSP-PKAPTRSMRSKAERAGALD 344
           +REMIL  RA+K+ D++L EKL+ +   KG   Q RK +P P +  RS    A+RA A D
Sbjct: 122 QREMILLDRASKKEDKNLKEKLRPKWDNKGKATQSRKETPLPSSRVRSSARSADRAAAKD 181

Query: 345 ELVK----------------RRRESAKGGSGKR-YSPVKRRSFAAATLNSPXXXXXXXXX 473
           + +                 + R++++GGSG R     KR+S+ A +L+S          
Sbjct: 182 DALNELRAKRLKQQDPEAHGKLRDASRGGSGSRNLLHNKRKSYTATSLSSSSQSDSESES 241

Query: 474 XXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGCF 647
                       + DSDD++    S+  TF+DI+E+T+RRSKLAKW MEP+F+ELIVGCF
Sbjct: 242 QSEDEGSTGDGGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFFEELIVGCF 301

Query: 648 VRVGI 662
           VRVGI
Sbjct: 302 VRVGI 306


>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
           gi|557088572|gb|ESQ29352.1| hypothetical protein
           EUTSA_v10023338mg [Eutrema salsugineum]
          Length = 644

 Score =  146 bits (369), Expect = 5e-33
 Identities = 87/201 (43%), Positives = 123/201 (61%), Gaps = 25/201 (12%)
 Frame = +3

Query: 135 LYKDEDDREKLSKLTELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAP 299
           LYK+E+DR+KL+ +TE +REMIL  RA K+ D++ TEKL+ ++ +++     K + P   
Sbjct: 105 LYKNEEDRQKLAGMTEFQREMILAERADKKGDKNFTEKLRSKREKEKTPVSKKETQPLPA 164

Query: 300 TRSMRSKAERAG-------ALDELVKRR------------RESAKGGSGKR-YSPVKRRS 419
           +R +RS A  A        AL+EL  +R            R+++KGGSG R +S +KR+ 
Sbjct: 165 SRGVRSSARSADRAAAKDDALNELRAKRMKQQEPASLRKLRDASKGGSGSRDFSSMKRKP 224

Query: 420 FAAATLNSPXXXXXXXXXXXXXXXXXXXLADSDDDKISAESKVPTFEDIREITIRRSKLA 599
            A++ L++                    + DSDDD+    S VPTFEDI++ITIRRSKLA
Sbjct: 225 LASSNLSNSSQSDSDSRSQSDDEGSNGGMVDSDDDR----SDVPTFEDIKDITIRRSKLA 280

Query: 600 KWFMEPYFDELIVGCFVRVGI 662
           KW MEP+F+ELIVGCFVRVGI
Sbjct: 281 KWLMEPFFEELIVGCFVRVGI 301


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
           gi|550327599|gb|EEE97240.2| plus-3 domain-containing
           family protein [Populus trichocarpa]
          Length = 664

 Score =  144 bits (363), Expect = 2e-32
 Identities = 87/204 (42%), Positives = 125/204 (61%), Gaps = 28/204 (13%)
 Frame = +3

Query: 135 LYKDEDDREKLSKLTELEREMILEARATKRSDRDLTEKLKKRKGQD-----RKGSPPKAP 299
           LYKDEDDR+KL++++EL+RE+IL  RA K+ D+ LTEK++ ++  D     RK +PP   
Sbjct: 109 LYKDEDDRQKLAQMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPS 168

Query: 300 TRSMRSKAERAG-------ALDELVKRR------------RESAKGGSGKR-YSPVKRRS 419
           +R +RS A  A        AL+EL  +R            R++++G +G R ++ VK+ +
Sbjct: 169 SRGVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNN 228

Query: 420 FAAATLNSPXXXXXXXXXXXXXXXXXXX---LADSDDDKISAESKVPTFEDIREITIRRS 590
           F +A L+S                       +ADSD+D     S+ PT+EDI+EITIRR+
Sbjct: 229 FTSARLSSSSSESESGSRSHSEDEGSTGDGGMADSDEDG-DPGSRGPTYEDIKEITIRRT 287

Query: 591 KLAKWFMEPYFDELIVGCFVRVGI 662
           KLAKWFMEP+F+ELI+GCFVRVGI
Sbjct: 288 KLAKWFMEPWFEELIIGCFVRVGI 311


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
           sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Cucumis
           sativus]
          Length = 660

 Score =  143 bits (361), Expect = 4e-32
 Identities = 96/248 (38%), Positives = 132/248 (53%), Gaps = 29/248 (11%)
 Frame = +3

Query: 6   SQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLSKL 176
           SQVPLKKRLDP                                   LYKD+DDR KL+ +
Sbjct: 62  SQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAGM 121

Query: 177 TELEREMILEARATKRSDRDLTEKLKKR--KGQD---RKGSPP--KAPTRSMRSKAERAG 335
           +EL+REMIL  RA+K++D+ L E L+ +  KG+    RK +PP   +  RS    A+RA 
Sbjct: 122 SELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRAA 181

Query: 336 ALDELV----------------KRRRESAKGGSG-KRYSPVKRRSFAAATLNSPXXXXXX 464
           A D+ +                ++ R++++G +  +R+SP KR+ F A +L+S       
Sbjct: 182 AKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQSESE 241

Query: 465 XXXXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIV 638
                          + DSDD++    S  PTFEDI+E+TIRRSKLAKW MEP+F+ELIV
Sbjct: 242 SRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELIV 301

Query: 639 GCFVRVGI 662
           GCFVRVGI
Sbjct: 302 GCFVRVGI 309


>ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Cicer arietinum] gi|502110282|ref|XP_004493843.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Cicer arietinum]
          Length = 653

 Score =  142 bits (358), Expect = 9e-32
 Identities = 93/206 (45%), Positives = 121/206 (58%), Gaps = 30/206 (14%)
 Frame = +3

Query: 135 LYKDEDDREKLSKLTELEREMILEARATKRSDRDLTEKL--KKRKGQ----DRKGSPP-- 290
           LYKDEDDR+KLS++TEL+REMIL  RA+K+ D+D   K+  K+ KG      R+ SPP  
Sbjct: 99  LYKDEDDRQKLSEMTELQREMILSDRASKKDDKDFLGKIASKREKGAKATLSRRESPPPP 158

Query: 291 ------KAPTRSMRSKAERAGALDELVKRR------------RESAKGGSGKRYSPVKRR 416
                 +A  RS    A + GAL+EL  +R            +E +K G G+    +K +
Sbjct: 159 LLSSRVRASARSADRSAAKDGALNELRAKRLKQLDPEAKLKLKEGSKSG-GRGLFSLKGK 217

Query: 417 SFAAATLNSPXXXXXXXXXXXXXXXXXXX--LADSDDDKISAES--KVPTFEDIREITIR 584
            FA+  L+S                      + DSDDD+I   S  +VP+FEDI+EITIR
Sbjct: 218 PFASTGLSSSSHSDSDSRSRSDDEGSNGDGGIIDSDDDRIMTGSGFEVPSFEDIKEITIR 277

Query: 585 RSKLAKWFMEPYFDELIVGCFVRVGI 662
           RSKLAKWFMEP+F+ELIVGCFVRVGI
Sbjct: 278 RSKLAKWFMEPFFEELIVGCFVRVGI 303


>ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Capsella rubella]
           gi|482569554|gb|EOA33742.1| hypothetical protein
           CARUB_v10019938mg [Capsella rubella]
          Length = 644

 Score =  142 bits (358), Expect = 9e-32
 Identities = 88/201 (43%), Positives = 122/201 (60%), Gaps = 25/201 (12%)
 Frame = +3

Query: 135 LYKDEDDREKLSKLTELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAP 299
           LYK+E+DR+KL+ +TE +REMIL  RA K+ D++ TEKL+ ++  ++     K + P   
Sbjct: 105 LYKNEEDRQKLAGMTEFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPA 164

Query: 300 TRSMRSKAERAG-------ALDELVKRR------------RESAKGGSGKR-YSPVKRRS 419
           +R +RS A  A        AL+EL  +R            R+++KGGSG R +S +KR+ 
Sbjct: 165 SRGVRSSARSADRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSLKRKP 224

Query: 420 FAAATLNSPXXXXXXXXXXXXXXXXXXXLADSDDDKISAESKVPTFEDIREITIRRSKLA 599
            A++ L++                    L DSDDD+    S +PTFEDI+EITIRRSKLA
Sbjct: 225 LASSNLSNSSQSDSDSRSQSDDEGSNAGL-DSDDDR----SDMPTFEDIKEITIRRSKLA 279

Query: 600 KWFMEPYFDELIVGCFVRVGI 662
           KW MEP+F+ELIVGCFVRVGI
Sbjct: 280 KWLMEPFFEELIVGCFVRVGI 300