BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha23_contig00012266
         (726 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU38999.1| hypothetical protein MIMGU_mgv1a000239mg [Mimulus...   335   9e-90
gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlise...   283   3e-74
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma...   263   3e-68
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   231   2e-58
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   231   2e-58
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   226   5e-57
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              226   5e-57
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub...   225   1e-56
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   225   1e-56
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no...   216   6e-54
ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prun...   216   8e-54
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su...   211   2e-52
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su...   211   2e-52
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr...   211   2e-52
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   204   3e-50
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   201   2e-49
ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phas...   198   1e-48
ref|XP_007158453.1| hypothetical protein PHAVU_002G153700g [Phas...   198   1e-48
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su...   191   2e-46
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su...   191   2e-46

>gb|EYU38999.1| hypothetical protein MIMGU_mgv1a000239mg [Mimulus guttatus]
          Length = 1379

 Score =  335 bits (859), Expect = 9e-90
 Identities = 160/240 (66%), Positives = 197/240 (82%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            IRNIIDW++SHPD +LD  EA G+D AWQ FV SLH+AIS TGK ILPEHL++TANCLSA
Sbjct: 1070 IRNIIDWKQSHPDDILDISEAYGVDAAWQCFVTSLHSAISGTGKPILPEHLILTANCLSA 1129

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+PLN +GLA QRKE N++SPF+Q C +NPSDCF+KAAK  Q+DGL+GSLEALAWGQ
Sbjct: 1130 TGEFVPLNAKGLALQRKEANVHSPFNQGCLSNPSDCFLKAAKMGQMDGLQGSLEALAWGQ 1189

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEVKQVCRKSIASYHFDSK 186
            TP IGTGC F+I+Y GKGH  A+ ADVY+LLSTH + AK +A  KQV   SI+SYHF++K
Sbjct: 1190 TPPIGTGCRFDIVYNGKGHIPAKNADVYSLLSTHAERAKPNAMPKQVSGISISSYHFNTK 1249

Query: 185  GQNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNSTAMIALKFHPKWQDK 6
            G   LLR M+S+ F++VGI+K+SQRLKR+LK+YP N  L   D STA+ AL+FHP+W+DK
Sbjct: 1250 GCKTLLRRMVSQNFSMVGIQKISQRLKRMLKQYPMNSQLTGEDRSTAIRALQFHPQWKDK 1309


>gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlisea aurea]
          Length = 1380

 Score =  283 bits (725), Expect = 3e-74
 Identities = 143/243 (58%), Positives = 181/243 (74%), Gaps = 3/243 (1%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            IRN+IDWERS PD +LDY  A GI  AWQ FV +LH++I DTGK+ILPEHL+VTANCLSA
Sbjct: 1088 IRNLIDWERSLPDDILDYSNAFGISSAWQSFVKNLHSSIIDTGKTILPEHLIVTANCLSA 1147

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+ LN +GL  QRKE +I SPF+QA F NPSD FVKAAKA Q D L GS+EAL+WGQ
Sbjct: 1148 TGEFVALNAKGLVNQRKEIDIRSPFNQATFLNPSDTFVKAAKACQTDDLVGSVEALSWGQ 1207

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEVKQVCRKSIASYHFDSK 186
            TP IGTGC+F+++YKGKGHE+A+  DVY LL +H   AK++ + + +  KS    H  + 
Sbjct: 1208 TPRIGTGCQFDLIYKGKGHETAKNEDVYGLLISHDGRAKSNVKERSLSMKSSNPLHGINT 1267

Query: 185  GQNNLLRDMLS---RCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNSTAMIALKFHPKW 15
             Q+    + LS      +V+GIKK+SQ+LKRILKEYP +R L+  D STA+ AL+FHP+W
Sbjct: 1268 QQHKSWLERLSANMNHLSVLGIKKISQKLKRILKEYPMDRQLSGEDKSTALTALQFHPRW 1327

Query: 14   QDK 6
             +K
Sbjct: 1328 PEK 1330


>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
          Length = 1112

 Score =  263 bits (673), Expect = 3e-68
 Identities = 131/243 (53%), Positives = 176/243 (72%), Gaps = 3/243 (1%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            IR++IDW+RSHPD + DY EA GID AW  FVNSL++AIS+TGK+ILPEHL+ TANCLS 
Sbjct: 820  IRSLIDWDRSHPDDVHDYGEAFGIDTAWMCFVNSLNSAISETGKTILPEHLIATANCLSM 879

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+ LN +GLAQQRKE  I SPF QACF+NPSDCF+KAAK  Q+D L+GS+++LAWGQ
Sbjct: 880  TGEFVSLNAKGLAQQRKEATINSPFVQACFSNPSDCFIKAAKMGQMDNLQGSVDSLAWGQ 939

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEVK---QVCRKSIASYHF 195
            TP IGTG +F+I+Y GKGHE ++  DVY+LL++ +  AK S ++K   Q    +  S + 
Sbjct: 940  TPPIGTGGQFDIIYSGKGHEPSKPTDVYSLLNSQVGFAKPSEKIKLPVQFTSGNDQSQNL 999

Query: 194  DSKGQNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNSTAMIALKFHPKW 15
             + G+   L  M S       I++VS  LKR+L EY ++  L   D + A+ AL++HP+W
Sbjct: 1000 KTNGRKRFLAGMKSLRSAEDEIREVSLALKRMLHEYASDCQLRGEDKTLALRALQYHPRW 1059

Query: 14   QDK 6
            ++K
Sbjct: 1060 EEK 1062


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  231 bits (588), Expect = 2e-58
 Identities = 123/251 (49%), Positives = 163/251 (64%), Gaps = 11/251 (4%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            IR++IDWERS+PD + D   A GIDVAW+YF+  LH+A+S+TGK ILPEHLV+ A+ L+A
Sbjct: 919  IRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTA 978

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+PL+ +GL  QRK   + SPF QACF+NP D FV+AAK    D L+GSLE+LAWG+
Sbjct: 979  TGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGK 1038

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEV----------KQVCRK 216
            TPSIGTG  F+I+Y GKG+E A   DVYTLL  H+ S     +V          K + R+
Sbjct: 1039 TPSIGTGSSFDIIYSGKGYEPAEPIDVYTLLQNHVTSGTPKVKVTLDEDGGMDGKSLARR 1098

Query: 215  SIASYHFDSKGQNNLLRDMLSRCF-TVVGIKKVSQRLKRILKEYPANRHLNFNDNSTAMI 39
                   + K   +       R F +   IKK+SQ LK++L +Y  +R LN  D   AM+
Sbjct: 1099 LDRLDDLNKKSCKSEWSITKLRSFISFNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMM 1158

Query: 38   ALKFHPKWQDK 6
            AL+FHP+  +K
Sbjct: 1159 ALQFHPRRNEK 1169


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  231 bits (588), Expect = 2e-58
 Identities = 123/251 (49%), Positives = 163/251 (64%), Gaps = 11/251 (4%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            IR++IDWERS+PD + D   A GIDVAW+YF+  LH+A+S+TGK ILPEHLV+ A+ L+A
Sbjct: 1132 IRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTA 1191

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+PL+ +GL  QRK   + SPF QACF+NP D FV+AAK    D L+GSLE+LAWG+
Sbjct: 1192 TGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGK 1251

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEV----------KQVCRK 216
            TPSIGTG  F+I+Y GKG+E A   DVYTLL  H+ S     +V          K + R+
Sbjct: 1252 TPSIGTGSSFDIIYSGKGYEPAEPIDVYTLLQNHVTSGTPKVKVTLDEDGGMDGKSLARR 1311

Query: 215  SIASYHFDSKGQNNLLRDMLSRCF-TVVGIKKVSQRLKRILKEYPANRHLNFNDNSTAMI 39
                   + K   +       R F +   IKK+SQ LK++L +Y  +R LN  D   AM+
Sbjct: 1312 LDRLDDLNKKSCKSEWSITKLRSFISFNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMM 1371

Query: 38   ALKFHPKWQDK 6
            AL+FHP+  +K
Sbjct: 1372 ALQFHPRRNEK 1382


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  226 bits (577), Expect = 5e-57
 Identities = 115/254 (45%), Positives = 164/254 (64%), Gaps = 14/254 (5%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I ++IDWERSHPD + D +   GID  W+YF+NSL +AISD GK++LPEHL++ A+CLSA
Sbjct: 1173 IMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSA 1232

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+ LN +G+A+Q++ T+I SPF Q CF++P  CF+KA K    D L GSL+ALAWG+
Sbjct: 1233 TGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGK 1292

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEVK---------QVCRKS 213
             PS+G+G  F+ILY  KGHE AR  D+Y LL +     + + +VK           C   
Sbjct: 1293 IPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQ 1352

Query: 212  IASYHFDS-----KGQNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNST 48
            +   + DS     K    + + +L    ++  I+K+S+RLK IL++YP N  L+  D +T
Sbjct: 1353 LVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTT 1412

Query: 47   AMIALKFHPKWQDK 6
             M+AL FHP+  +K
Sbjct: 1413 LMMALYFHPRRDEK 1426


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  226 bits (577), Expect = 5e-57
 Identities = 115/254 (45%), Positives = 164/254 (64%), Gaps = 14/254 (5%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I ++IDWERSHPD + D +   GID  W+YF+NSL +AISD GK++LPEHL++ A+CLSA
Sbjct: 1031 IMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSA 1090

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+ LN +G+A+Q++ T+I SPF Q CF++P  CF+KA K    D L GSL+ALAWG+
Sbjct: 1091 TGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGK 1150

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEVK---------QVCRKS 213
             PS+G+G  F+ILY  KGHE AR  D+Y LL +     + + +VK           C   
Sbjct: 1151 IPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQ 1210

Query: 212  IASYHFDS-----KGQNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNST 48
            +   + DS     K    + + +L    ++  I+K+S+RLK IL++YP N  L+  D +T
Sbjct: 1211 LVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTT 1270

Query: 47   AMIALKFHPKWQDK 6
             M+AL FHP+  +K
Sbjct: 1271 LMMALYFHPRRDEK 1284


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
            lycopersicum]
          Length = 1446

 Score =  225 bits (573), Expect = 1e-56
 Identities = 121/251 (48%), Positives = 162/251 (64%), Gaps = 11/251 (4%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            IR++IDWERS+PD + D   A GIDVAW+YF+  LH+A+S+TGK ILPEHLV+ A+ L+ 
Sbjct: 1132 IRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTT 1191

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+PL+ +GL  QRK   + SPF QACFTNP D FV+AAK    D L+GSLE+LAWG+
Sbjct: 1192 TGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGK 1251

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEV----------KQVCRK 216
            TPSIGTG  F+I+Y GKG+E A + +VYTLL   +     + +V            + R+
Sbjct: 1252 TPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDGGMDGMSLVRR 1311

Query: 215  SIASYHFDSKG-QNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNSTAMI 39
                   D K  ++ L    L   F+   IKK+SQ LK++L +Y   R LN  D   AM+
Sbjct: 1312 LDRLDDLDKKSCKSELSFTKLRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMM 1371

Query: 38   ALKFHPKWQDK 6
            AL+FHP+  +K
Sbjct: 1372 ALQFHPRRNEK 1382


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  225 bits (573), Expect = 1e-56
 Identities = 121/251 (48%), Positives = 162/251 (64%), Gaps = 11/251 (4%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            IR++IDWERS+PD + D   A GIDVAW+YF+  LH+A+S+TGK ILPEHLV+ A+ L+ 
Sbjct: 824  IRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTT 883

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+PL+ +GL  QRK   + SPF QACFTNP D FV+AAK    D L+GSLE+LAWG+
Sbjct: 884  TGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGK 943

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEV----------KQVCRK 216
            TPSIGTG  F+I+Y GKG+E A + +VYTLL   +     + +V            + R+
Sbjct: 944  TPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDGGMDGMSLVRR 1003

Query: 215  SIASYHFDSKG-QNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNSTAMI 39
                   D K  ++ L    L   F+   IKK+SQ LK++L +Y   R LN  D   AM+
Sbjct: 1004 LDRLDDLDKKSCKSELSFTKLRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMM 1063

Query: 38   ALKFHPKWQDK 6
            AL+FHP+  +K
Sbjct: 1064 ALQFHPRRNEK 1074


>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
          Length = 1410

 Score =  216 bits (550), Expect = 6e-54
 Identities = 112/255 (43%), Positives = 164/255 (64%), Gaps = 15/255 (5%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I ++IDW RSHP+ + ++    GID  W++F+N+L +A+SD GK+ILPEHL++ AN LS 
Sbjct: 1084 IMDLIDWSRSHPENVNEFCSVYGIDSGWKFFLNNLESAVSDVGKTILPEHLLLVANTLSV 1143

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TG F+ L P+GLA+QR+  ++ +PFSQACF+NP+ CF+KAAKAE  DGL G+L+ALAWG 
Sbjct: 1144 TGNFVGLTPKGLARQREHASVATPFSQACFSNPAACFIKAAKAEVTDGLHGTLDALAWGN 1203

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEVKQVCRKSIASYH---- 198
             P +GTG +F +++ GKGHE  +  +VY +L+T +     S +V+ V     A  H    
Sbjct: 1204 IPPLGTGGQFELVFSGKGHEVDKPINVYDMLATGI-----SPDVQGVNETPDAKNHRSVK 1258

Query: 197  ------FD---SKGQNNL--LRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNS 51
                  +D   S+G   L   +D + + F +  I  +S  L +IL +YP N+ L+  D S
Sbjct: 1259 FGALLLYDKSVSQGLKKLGISKDRIKKLFKLDDIWILSNALAKILNKYPINQSLDHKDKS 1318

Query: 50   TAMIALKFHPKWQDK 6
            T MIAL FHP+  +K
Sbjct: 1319 TLMIALYFHPRIDEK 1333


>ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
            gi|462406650|gb|EMJ12114.1| hypothetical protein
            PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  216 bits (549), Expect = 8e-54
 Identities = 110/244 (45%), Positives = 157/244 (64%), Gaps = 4/244 (1%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I ++IDW RSHPD + DY  A GID  W+YF+N+L TA +D GK ILP+HL++ A+CLSA
Sbjct: 1048 IMDLIDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSA 1107

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+ LN +G+AQQ+  T++ SPF QACF++P  CF+KAAK   VD L GS+EALAWG 
Sbjct: 1108 TGEFVGLNAKGIAQQKGHTSVSSPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGN 1167

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASA-EVKQVCRKSIASYHFDS 189
            TP  GTG +F+ILY  +G   ++  + Y LL + + S++ +A E  +    ++      S
Sbjct: 1168 TPPSGTGRQFDILYSKEGLNLSKPLNPYDLLGSQISSSRENAFETSKAWNNTLDKCDVTS 1227

Query: 188  KG---QNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNSTAMIALKFHPK 18
             G     ++ + ++ +  T+  I+K +Q LKRIL++Y  N  L   D S   +AL FHP 
Sbjct: 1228 IGLEKSESVFKSVIRKYLTINDIQKWTQTLKRILRKYDINESLTEGDKSILKMALHFHPH 1287

Query: 17   WQDK 6
              DK
Sbjct: 1288 KVDK 1291


>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Citrus sinensis] gi|568847098|ref|XP_006477377.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X3 [Citrus sinensis]
            gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1-like isoform X4 [Citrus
            sinensis]
          Length = 1443

 Score =  211 bits (538), Expect = 2e-52
 Identities = 111/251 (44%), Positives = 156/251 (62%), Gaps = 11/251 (4%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I ++IDW RSHPD +  +  A GID   Q+F+ +L +AISDTGK+ILPEHL++ AN LSA
Sbjct: 1128 IMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSA 1187

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+ LN +GLA QRK +++ SPF QA F+NP   F+KAAKA  VD L+GS++AL WG+
Sbjct: 1188 TGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGK 1247

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLST--------HLKSAKASAEVKQVCRKSI 210
             PS+GTG  F+I+Y G+G   ++  DVY LLST         LK  KA   +   C    
Sbjct: 1248 VPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQGLISDKCGAKF 1307

Query: 209  ASYHFDSKGQ---NNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNSTAMI 39
              + F   G      + R +L + +T   + ++S  LK+IL +Y   + L+  D +T + 
Sbjct: 1308 GDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIR 1367

Query: 38   ALKFHPKWQDK 6
            AL FHP+  +K
Sbjct: 1368 ALYFHPRRNEK 1378


>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Citrus sinensis]
          Length = 1481

 Score =  211 bits (538), Expect = 2e-52
 Identities = 111/251 (44%), Positives = 156/251 (62%), Gaps = 11/251 (4%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I ++IDW RSHPD +  +  A GID   Q+F+ +L +AISDTGK+ILPEHL++ AN LSA
Sbjct: 1166 IMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSA 1225

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+ LN +GLA QRK +++ SPF QA F+NP   F+KAAKA  VD L+GS++AL WG+
Sbjct: 1226 TGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGK 1285

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLST--------HLKSAKASAEVKQVCRKSI 210
             PS+GTG  F+I+Y G+G   ++  DVY LLST         LK  KA   +   C    
Sbjct: 1286 VPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQGLISDKCGAKF 1345

Query: 209  ASYHFDSKGQ---NNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNSTAMI 39
              + F   G      + R +L + +T   + ++S  LK+IL +Y   + L+  D +T + 
Sbjct: 1346 GDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIR 1405

Query: 38   ALKFHPKWQDK 6
            AL FHP+  +K
Sbjct: 1406 ALYFHPRRNEK 1416


>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
            gi|557542783|gb|ESR53761.1| hypothetical protein
            CICLE_v10018489mg [Citrus clementina]
          Length = 1443

 Score =  211 bits (538), Expect = 2e-52
 Identities = 111/251 (44%), Positives = 156/251 (62%), Gaps = 11/251 (4%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I ++IDW RSHPD +  +  A GID   Q+F+ +L +AISDTGK+ILPEHL++ AN LSA
Sbjct: 1128 IMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSA 1187

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+ LN +GLA QRK +++ SPF QA F+NP   F+KAAKA  VD L+GS++AL WG+
Sbjct: 1188 TGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGK 1247

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLST--------HLKSAKASAEVKQVCRKSI 210
             PS+GTG  F+I+Y G+G   ++  DVY LLST         LK  KA   +   C    
Sbjct: 1248 VPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQGLISDKCGAKF 1307

Query: 209  ASYHFDSKGQ---NNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNSTAMI 39
              + F   G      + R +L + +T   + ++S  LK+IL +Y   + L+  D +T + 
Sbjct: 1308 GDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIR 1367

Query: 38   ALKFHPKWQDK 6
            AL FHP+  +K
Sbjct: 1368 ALYFHPRRNEK 1378


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  204 bits (518), Expect = 3e-50
 Identities = 113/259 (43%), Positives = 156/259 (60%), Gaps = 19/259 (7%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I ++IDW RSHPD +     A GID  W++F+N+L +AISDTGK+IL EHL+V ANCLSA
Sbjct: 1166 IMDMIDWTRSHPDNINQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSA 1225

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+ LN +GL QQR+   + SPF QACF+NPS  FVKAAK    D L+G+++ALAWG+
Sbjct: 1226 TGEFVGLNSKGLRQQREHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGR 1285

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEVKQVCRKSIASYHFDSK 186
             P IGTG +F+I+Y  K    A   DVY LL + + S K   E +        + +F S+
Sbjct: 1286 IPHIGTGGQFDIIYSVKDQRLAEPVDVYKLLGSSISSQKQDVEFEVP-----KALNFKSE 1340

Query: 185  GQNNLLRDMLS-------------------RCFTVVGIKKVSQRLKRILKEYPANRHLNF 63
               +LL D L                       T+  I+++S+ L+ IL +YP +  L+ 
Sbjct: 1341 KYGSLLIDALGDSASEELKKIETKRRSIWRELLTLDDIQRLSRALRNILHKYPIDHRLSE 1400

Query: 62   NDNSTAMIALKFHPKWQDK 6
             D +T M+AL FHP+  +K
Sbjct: 1401 ADWNTLMMALYFHPRRDEK 1419


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  201 bits (512), Expect = 2e-49
 Identities = 108/253 (42%), Positives = 153/253 (60%), Gaps = 13/253 (5%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I ++IDW RSHPD       A GID  W+YF+NSL +A  D GK+I  EHL++ +N LSA
Sbjct: 1152 IMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLVSNSLSA 1211

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            TGEF+ LN +GL  QR+   + +PF QACF++P  C +KAAKA   D L GSL+ALAWG+
Sbjct: 1212 TGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLDALAWGR 1271

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHLKSAKASAEVKQVCRKSIASYHFDS- 189
             PS+GTG +F+ILY GKGHE  +  DVY LL       K + +++ + + +I+  +    
Sbjct: 1272 MPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIESLDKNTISEKYSAQL 1331

Query: 188  ------------KGQNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNSTA 45
                        K  +++ + +L +  T+  I+K+S  L+ IL +Y  N  LN  D ST 
Sbjct: 1332 MLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTL 1391

Query: 44   MIALKFHPKWQDK 6
            M+AL FHP   +K
Sbjct: 1392 MMALYFHPHRDEK 1404


>ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
            gi|561031869|gb|ESW30448.1| hypothetical protein
            PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1464

 Score =  198 bits (504), Expect = 1e-48
 Identities = 114/255 (44%), Positives = 152/255 (59%), Gaps = 15/255 (5%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I  IIDW RSHPD +     A GIDVAWQY+  SL +AISDTGKSILP+HL + AN +SA
Sbjct: 1144 IMQIIDWPRSHPDNINYLSSAYGIDVAWQYYYKSLASAISDTGKSILPKHLRLLANSMSA 1203

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            +GEF+ LN +G+AQQR+  ++ SPF QACF+NP   F+KAAK+E  D L+GSL+ALAWG 
Sbjct: 1204 SGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAKSELTDNLQGSLDALAWGN 1263

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHL--------------KSAKASAEVKQ 228
             PS+GT   F+I+Y  KGHE  +  DVY LL                   S K  +E + 
Sbjct: 1264 CPSMGTSGLFDIIYSEKGHEVDKAVDVYKLLEASFDKPNNKIGFHAHNNSSGKCGSEFRH 1323

Query: 227  VCRKSIASYHF-DSKGQNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNS 51
                    Y F + K   N+LR+ +    TV  I+K++   + IL +Y  +  L+  D S
Sbjct: 1324 K-----NGYAFKEGKQWKNILRNFV----TVNDIQKLTTASRCILNKYEIDELLSEFDRS 1374

Query: 50   TAMIALKFHPKWQDK 6
            T +  L FHP+  +K
Sbjct: 1375 TILRVLNFHPRRSEK 1389


>ref|XP_007158453.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
            gi|561031868|gb|ESW30447.1| hypothetical protein
            PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1463

 Score =  198 bits (504), Expect = 1e-48
 Identities = 114/255 (44%), Positives = 152/255 (59%), Gaps = 15/255 (5%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I  IIDW RSHPD +     A GIDVAWQY+  SL +AISDTGKSILP+HL + AN +SA
Sbjct: 1143 IMQIIDWPRSHPDNINYLSSAYGIDVAWQYYYKSLASAISDTGKSILPKHLRLLANSMSA 1202

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            +GEF+ LN +G+AQQR+  ++ SPF QACF+NP   F+KAAK+E  D L+GSL+ALAWG 
Sbjct: 1203 SGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAKSELTDNLQGSLDALAWGN 1262

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLLSTHL--------------KSAKASAEVKQ 228
             PS+GT   F+I+Y  KGHE  +  DVY LL                   S K  +E + 
Sbjct: 1263 CPSMGTSGLFDIIYSEKGHEVDKAVDVYKLLEASFDKPNNKIGFHAHNNSSGKCGSEFRH 1322

Query: 227  VCRKSIASYHF-DSKGQNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNS 51
                    Y F + K   N+LR+ +    TV  I+K++   + IL +Y  +  L+  D S
Sbjct: 1323 K-----NGYAFKEGKQWKNILRNFV----TVNDIQKLTTASRCILNKYEIDELLSEFDRS 1373

Query: 50   TAMIALKFHPKWQDK 6
            T +  L FHP+  +K
Sbjct: 1374 TILRVLNFHPRRSEK 1388


>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
            [Glycine max]
          Length = 1381

 Score =  191 bits (486), Expect = 2e-46
 Identities = 109/254 (42%), Positives = 148/254 (58%), Gaps = 14/254 (5%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I +IIDW RSH D +  +  A GID  WQYF NSL  A SDTGKSILP+HL + AN LS 
Sbjct: 1071 IMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSC 1130

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            +GEF+ LN +G+A QRK  ++ SPF QACF NP  CF+KAAK+   D L+GSL+ LAWG 
Sbjct: 1131 SGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWGN 1190

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLL-----------STHL---KSAKASAEVKQ 228
              S+GT   F+++Y  KGH+ A+  DVY LL            THL    S K  +E + 
Sbjct: 1191 CLSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASFDKPNNKIGTHLHKYSSDKCGSEFRH 1250

Query: 227  VCRKSIASYHFDSKGQNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNST 48
                ++     + K    +LR+ +    TV  I+K++   + IL +Y  +  L+ +D ST
Sbjct: 1251 KNGYALK----EGKQWKTILRNFV----TVNDIQKLTFASRCILNKYSIDELLSESDRST 1302

Query: 47   AMIALKFHPKWQDK 6
             +  L FHP   +K
Sbjct: 1303 MLRVLNFHPHKSEK 1316


>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Glycine max]
          Length = 1457

 Score =  191 bits (486), Expect = 2e-46
 Identities = 109/254 (42%), Positives = 148/254 (58%), Gaps = 14/254 (5%)
 Frame = -2

Query: 725  IRNIIDWERSHPDVLLDYYEANGIDVAWQYFVNSLHTAISDTGKSILPEHLVVTANCLSA 546
            I +IIDW RSH D +  +  A GID  WQYF NSL  A SDTGKSILP+HL + AN LS 
Sbjct: 1147 IMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSC 1206

Query: 545  TGEFLPLNPRGLAQQRKETNIYSPFSQACFTNPSDCFVKAAKAEQVDGLRGSLEALAWGQ 366
            +GEF+ LN +G+A QRK  ++ SPF QACF NP  CF+KAAK+   D L+GSL+ LAWG 
Sbjct: 1207 SGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWGN 1266

Query: 365  TPSIGTGCEFNILYKGKGHESARRADVYTLL-----------STHL---KSAKASAEVKQ 228
              S+GT   F+++Y  KGH+ A+  DVY LL            THL    S K  +E + 
Sbjct: 1267 CLSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASFDKPNNKIGTHLHKYSSDKCGSEFRH 1326

Query: 227  VCRKSIASYHFDSKGQNNLLRDMLSRCFTVVGIKKVSQRLKRILKEYPANRHLNFNDNST 48
                ++     + K    +LR+ +    TV  I+K++   + IL +Y  +  L+ +D ST
Sbjct: 1327 KNGYALK----EGKQWKTILRNFV----TVNDIQKLTFASRCILNKYSIDELLSESDRST 1378

Query: 47   AMIALKFHPKWQDK 6
             +  L FHP   +K
Sbjct: 1379 MLRVLNFHPHKSEK 1392