BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha23_contig00012258
         (698 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus...   402   e-110
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   392   e-107
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   390   e-106
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   389   e-106
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   388   e-106
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   374   e-101
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   374   e-101
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...   373   e-101
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]       372   e-101
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              371   e-100
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   371   e-100
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   367   2e-99
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]      363   2e-98
ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutr...   361   1e-97
ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Caps...   361   1e-97
ref|XP_007013879.1| DNA/RNA polymerases superfamily protein isof...   360   2e-97
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof...   360   2e-97
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...   360   2e-97
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   359   4e-97
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   359   4e-97

>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus guttatus]
          Length = 941

 Score =  402 bits (1033), Expect = e-110
 Identities = 192/233 (82%), Positives = 207/233 (88%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            VRPAFRHIFKIA R PGQ+IVK+YG IECDPLVL GLDKTV+HMIIPYVPMLVPPK+WKG
Sbjct: 322  VRPAFRHIFKIATRLPGQTIVKRYGVIECDPLVLAGLDKTVKHMIIPYVPMLVPPKKWKG 381

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YD+GGYLFLPSYLMRTHGSR QQDAV+ V  KQMQKVYEALDTLGNTKWRVN+RIL VVE
Sbjct: 382  YDRGGYLFLPSYLMRTHGSRHQQDAVKTVTSKQMQKVYEALDTLGNTKWRVNKRILTVVE 441

Query: 362  NLWAAGGDVAGLVNRENVPIPE-LLSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
            N+WAAGG++AGLVNRE++PIPE LLS+D KE             INQERHSQRCD ELKL
Sbjct: 442  NIWAAGGNIAGLVNREDIPIPELLLSEDMKEAKKWKWSVRKVKKINQERHSQRCDTELKL 501

Query: 539  SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            SVAR MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGK
Sbjct: 502  SVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 554


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score =  392 bits (1006), Expect = e-107
 Identities = 181/232 (78%), Positives = 208/232 (89%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            +RPAFRH+F+IA R+PG+SIVKKYG IECDPLV+ G+D+TV+ M+IPYVPMLVPPK+W+G
Sbjct: 359  IRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRG 418

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGGYLFLPSYLMRTHGSRRQQDAVR+VP KQMQ+VYEALDTLG+TKWRVN+RIL+VVE
Sbjct: 419  YDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVE 478

Query: 362  NLWAAGGDVAGLVNRENVPIPELLSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKLS 541
            ++WA GG++AGLV+R++VPIPEL SDD  E+            INQE HSQRCD ELKLS
Sbjct: 479  SIWAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLS 538

Query: 542  VARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            VAR +KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA+GRPLGK
Sbjct: 539  VARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGK 590


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score =  390 bits (1001), Expect = e-106
 Identities = 180/232 (77%), Positives = 208/232 (89%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            +RPAFRH+F+IA R+PG++IVKKYG IECDPLV+ G+D+TV+ M+IPYVPMLVPPK+W+G
Sbjct: 397  IRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRG 456

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGGYLFLPSYLMRTHGSRRQQDAVR+VP KQMQ+VYEALDTLG+TKWRVN+RIL+VVE
Sbjct: 457  YDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGSTKWRVNKRILSVVE 516

Query: 362  NLWAAGGDVAGLVNRENVPIPELLSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKLS 541
            ++WA GG++AGLV+R++VPIPEL SDD  E+            INQE HSQRCD ELKLS
Sbjct: 517  SIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQELHSQRCDTELKLS 576

Query: 542  VARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            VAR +KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA+GRPLGK
Sbjct: 577  VARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGK 628


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score =  389 bits (999), Expect = e-106
 Identities = 182/233 (78%), Positives = 207/233 (88%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            +RPAFRH+FKIA R+PG++IVKKYG IECDPLV+ G+D+TV+ M+IPYVPMLVPPK+W+G
Sbjct: 358  IRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRG 417

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGGYLFLPSYLMRTHGSRRQQDAVR VP KQMQ+VYEALDTLG+TKWRVN+RILNVVE
Sbjct: 418  YDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVE 477

Query: 362  NLWAAGGDVAGLVNRENVPIPELL-SDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
            ++WA GG++AGLV+R++VPIPEL  SDD  E+            INQE HSQRCD ELKL
Sbjct: 478  SIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKL 537

Query: 539  SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            SVAR +KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA+GRPLGK
Sbjct: 538  SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGK 590


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score =  388 bits (997), Expect = e-106
 Identities = 179/232 (77%), Positives = 207/232 (89%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            +RPAFRH+F+IA R+PG++IVKKYG IECDPLV+ G+D+TV+ M+IPYVPMLVPPK+W+G
Sbjct: 389  IRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRG 448

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGGYLFLPSYLMRTHGSRRQQDAVR+VP KQMQ+VYEALDTLG+TKWRVN+RIL+VVE
Sbjct: 449  YDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGSTKWRVNKRILSVVE 508

Query: 362  NLWAAGGDVAGLVNRENVPIPELLSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKLS 541
             +WA GG++AGLV+R++VPIPEL SDD  E+            INQE HSQRCD ELKLS
Sbjct: 509  TIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQELHSQRCDTELKLS 568

Query: 542  VARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            VAR ++DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA+GRPLGK
Sbjct: 569  VARKLRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGK 620


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 882

 Score =  374 bits (960), Expect = e-101
 Identities = 176/233 (75%), Positives = 198/233 (84%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2   VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
           VRPAFRHIFK   + PGQ IVKKYG IECDPL+L GLD T +HM+IPY PMLVPPK+WKG
Sbjct: 263 VRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKG 322

Query: 182 YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
           YDKGG+LFLPSY+MRTHGSR+QQ AVR+VP KQMQKV+EALDTLGNTKWRVNRR+L+VVE
Sbjct: 323 YDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVE 382

Query: 362 NLWAAGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
            +W +GG++AGLV+RE++PIPE   SDD  EI            INQERHSQRCD ELKL
Sbjct: 383 RIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKL 442

Query: 539 SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
           SVAR +KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRG+LEF +GRPLGK
Sbjct: 443 SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGK 495


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  374 bits (960), Expect = e-101
 Identities = 176/233 (75%), Positives = 198/233 (84%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            VRPAFRHIFK   + PGQ  VKKYG IECDPL+L GLD T +HM+IPY PMLVPPK+W+G
Sbjct: 363  VRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRG 422

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGG+LFLPSY+MRTHGSR+QQDAVR+VP KQMQKV+EALDTLGNTKWRVN ++L+VVE
Sbjct: 423  YDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVE 482

Query: 362  NLWAAGGDVAGLVNRENVPIPE-LLSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
             +WA+GG+ AGLVNR ++PIPE L SDD  EI            INQERHSQRCD ELKL
Sbjct: 483  RIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKL 542

Query: 539  SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            SVAR +KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRG+LEFA+GRPLGK
Sbjct: 543  SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGK 595


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  373 bits (957), Expect = e-101
 Identities = 175/233 (75%), Positives = 199/233 (85%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            VRPAFRH FK  A+ PGQ IVK YG IECDPLVL GLDKT +HM+IPYVPMLVPPKRWKG
Sbjct: 357  VRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPKRWKG 416

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGG+LFLPSY+MRTHGSR+Q DA+R +   QMQKV+EALD LG+TKWRVN+++L+VVE
Sbjct: 417  YDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGSTKWRVNKKVLSVVE 476

Query: 362  NLWAAGGDVAGLVNRENVPIPELL-SDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
            ++WA GG++AGLVNRE+VP+P+   S+D KEI            INQERHSQRCD ELKL
Sbjct: 477  SIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQRCDTELKL 536

Query: 539  SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            SVAR MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGK
Sbjct: 537  SVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 589


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score =  372 bits (954), Expect = e-101
 Identities = 170/232 (73%), Positives = 199/232 (85%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            VRPAFRH FKIA REP Q++V++YG IECDPL+L G +  V+HM++P++PML+PPK+WKG
Sbjct: 334  VRPAFRHFFKIATREPRQTVVRRYGVIECDPLILDGFESNVKHMMVPHIPMLIPPKKWKG 393

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGGYLFLPSY+MRTHGSRRQQDAV+ V  ++MQKV+EALDTLGNTKWRVN+ IL+VVE
Sbjct: 394  YDKGGYLFLPSYVMRTHGSRRQQDAVKTVSPRKMQKVFEALDTLGNTKWRVNKSILSVVE 453

Query: 362  NLWAAGGDVAGLVNRENVPIPELLSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKLS 541
            ++WAAGG++AGLVNRE+VP+PEL SDD  EI             N E HS RCD ELKLS
Sbjct: 454  DIWAAGGNIAGLVNREDVPLPELHSDDPIEIKKWKFSIRKAKKNNMEMHSLRCDTELKLS 513

Query: 542  VARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            VAR MKDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRGILEF++GRPLGK
Sbjct: 514  VARAMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGILEFSEGRPLGK 565


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  371 bits (952), Expect = e-100
 Identities = 172/233 (73%), Positives = 199/233 (85%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2   VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
           VRPAFRH FK   +E GQ   +KYG IECDPLVL GLD+T +HM+IPYVPML+PPK+WKG
Sbjct: 189 VRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKG 248

Query: 182 YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
           YDKGGYLFLPSY+MRTHGSR+QQDAV++VP +Q+QKV+EALDTLGNTKWR+NRR+L+VVE
Sbjct: 249 YDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVE 308

Query: 362 NLWAAGGDVAGLVNRENVPIPELLS-DDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
           ++WA GG++ GLV+RENVP+PE  S +D  EI            INQERHS RCD E+KL
Sbjct: 309 SIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKL 368

Query: 539 SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
           SVAR MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGK
Sbjct: 369 SVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 421


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score =  371 bits (952), Expect = e-100
 Identities = 172/233 (73%), Positives = 199/233 (85%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            VRPAFRH FK   +E GQ   +KYG IECDPLVL GLD+T +HM+IPYVPML+PPK+WKG
Sbjct: 360  VRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKG 419

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGGYLFLPSY+MRTHGSR+QQDAV++VP +Q+QKV+EALDTLGNTKWR+NRR+L+VVE
Sbjct: 420  YDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVE 479

Query: 362  NLWAAGGDVAGLVNRENVPIPELLS-DDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
            ++WA GG++ GLV+RENVP+PE  S +D  EI            INQERHS RCD E+KL
Sbjct: 480  SIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKL 539

Query: 539  SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            SVAR MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGK
Sbjct: 540  SVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 592


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score =  367 bits (943), Expect = 2e-99
 Identities = 170/233 (72%), Positives = 198/233 (84%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            VRPAFRH  K AA+ PGQ +VK YG IECDPLVL GLDKT +HM+IPYVPMLVPPKRWKG
Sbjct: 354  VRPAFRHRLKAAAKSPGQKLVKNYGVIECDPLVLAGLDKTAKHMLIPYVPMLVPPKRWKG 413

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGG+LFLPSY+MRTHGSR+Q D +R +  +QMQKV+EALD LG+TKWR+N+++LNVVE
Sbjct: 414  YDKGGHLFLPSYVMRTHGSRKQVDTMRNISGRQMQKVFEALDMLGSTKWRINKKVLNVVE 473

Query: 362  NLWAAGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
            ++WA GG++AGLV+RE+VP+PE   S+D  EI            +NQERHSQRCD ELKL
Sbjct: 474  SIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQRCDTELKL 533

Query: 539  SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            SVAR MKDE+GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGK
Sbjct: 534  SVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 586


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score =  363 bits (933), Expect = 2e-98
 Identities = 168/233 (72%), Positives = 198/233 (84%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            VRPAFRH FKI   E GQ +VK+YG IECDPLVL G+D++ R+MIIPYVPML+PPK WKG
Sbjct: 370  VRPAFRHKFKILNNELGQQVVKRYGVIECDPLVLKGIDRSARYMIIPYVPMLIPPKNWKG 429

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGGYLFLPSY+MRTHGSR+QQDA+R  P +QMQKV+EAL+TLG+TKWR+NR++L VVE
Sbjct: 430  YDKGGYLFLPSYVMRTHGSRKQQDAMRKTPPQQMQKVFEALNTLGHTKWRINRKVLGVVE 489

Query: 362  NLWAAGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
            NLWA+GG++ GLVN ++VP+PE  L++D  EI            IN+ERH+ RCDVELK+
Sbjct: 490  NLWASGGNIGGLVNCDDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDVELKI 549

Query: 539  SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            SVA+ MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA GRPLGK
Sbjct: 550  SVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFASGRPLGK 602


>ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum]
            gi|557106040|gb|ESQ46365.1| hypothetical protein
            EUTSA_v10000030mg [Eutrema salsugineum]
          Length = 993

 Score =  361 bits (926), Expect = 1e-97
 Identities = 170/232 (73%), Positives = 194/232 (83%), Gaps = 1/232 (0%)
 Frame = +2

Query: 5    RPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGY 184
            RPAFRH FK   + PG  +V++YG IECD L+L GLDK+ +HM+IPYVPMLVPPKRWKGY
Sbjct: 375  RPAFRHKFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGY 434

Query: 185  DKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVEN 364
            DKGGYLFLPSY+MRTHGS++QQDA+R +  K   +V+EALDTLGNTKWRVNR+IL+VVE 
Sbjct: 435  DKGGYLFLPSYIMRTHGSKKQQDALRDISSKTAHRVFEALDTLGNTKWRVNRKILDVVER 494

Query: 365  LWAAGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKLS 541
            LWA GG++AGLVNRE+VPIPE   S+D +EI            IN+ERHS RCDVELKLS
Sbjct: 495  LWADGGNIAGLVNREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRERHSLRCDVELKLS 554

Query: 542  VARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            VAR MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFA+GRPLGK
Sbjct: 555  VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGK 606


>ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Capsella rubella]
            gi|482564829|gb|EOA29019.1| hypothetical protein
            CARUB_v10025273mg [Capsella rubella]
          Length = 991

 Score =  361 bits (926), Expect = 1e-97
 Identities = 170/232 (73%), Positives = 194/232 (83%), Gaps = 1/232 (0%)
 Frame = +2

Query: 5    RPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGY 184
            RPAFRH FK   + PG  +V++YG IECD L+L GLDK+ +HMIIPYVPMLVPPKRWKGY
Sbjct: 373  RPAFRHKFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMIIPYVPMLVPPKRWKGY 432

Query: 185  DKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVEN 364
            DKGGYLFLPSY+MRTHGS++QQDA+R +  K   +V+EALDTLGNTKWRVNR+IL+VVE 
Sbjct: 433  DKGGYLFLPSYIMRTHGSKKQQDALRDISSKTAHRVFEALDTLGNTKWRVNRKILDVVER 492

Query: 365  LWAAGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKLS 541
            LWA GG++AGLVNRE+VPIPE   S+D +E+            IN+ERHS RCDVELKLS
Sbjct: 493  LWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSVRKANKINRERHSLRCDVELKLS 552

Query: 542  VARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            VAR MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFA+GRPLGK
Sbjct: 553  VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGK 604


>ref|XP_007013879.1| DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao]
            gi|508784242|gb|EOY31498.1| DNA/RNA polymerases
            superfamily protein isoform 3 [Theobroma cacao]
          Length = 927

 Score =  360 bits (925), Expect = 2e-97
 Identities = 163/233 (69%), Positives = 202/233 (86%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            V+PAFRH FK  +++PG+ ++K+YG IECDPL+L GLD++ +HM+IPYVPMLVPPK+WKG
Sbjct: 359  VQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKG 418

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGGYLFLPSY+MRTHGSR+QQDA++ V VK+MQKV+EALDTLG+TKWRVN+++L VVE
Sbjct: 419  YDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVE 478

Query: 362  NLWAAGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
            ++WA+GG++AGLV+R ++PIPE   S+D  E             IN+ERHSQRCD ELKL
Sbjct: 479  SIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKL 538

Query: 539  SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            SVAR M++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLG+
Sbjct: 539  SVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGR 591


>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
           gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
           superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score =  360 bits (925), Expect = 2e-97
 Identities = 163/233 (69%), Positives = 202/233 (86%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2   VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
           V+PAFRH FK  +++PG+ ++K+YG IECDPL+L GLD++ +HM+IPYVPMLVPPK+WKG
Sbjct: 237 VQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKG 296

Query: 182 YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
           YDKGGYLFLPSY+MRTHGSR+QQDA++ V VK+MQKV+EALDTLG+TKWRVN+++L VVE
Sbjct: 297 YDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVE 356

Query: 362 NLWAAGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
           ++WA+GG++AGLV+R ++PIPE   S+D  E             IN+ERHSQRCD ELKL
Sbjct: 357 SIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKL 416

Query: 539 SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
           SVAR M++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLG+
Sbjct: 417 SVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGR 469


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  360 bits (925), Expect = 2e-97
 Identities = 163/233 (69%), Positives = 202/233 (86%), Gaps = 1/233 (0%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            V+PAFRH FK  +++PG+ ++K+YG IECDPL+L GLD++ +HM+IPYVPMLVPPK+WKG
Sbjct: 359  VQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKG 418

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGGYLFLPSY+MRTHGSR+QQDA++ V VK+MQKV+EALDTLG+TKWRVN+++L VVE
Sbjct: 419  YDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVE 478

Query: 362  NLWAAGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKL 538
            ++WA+GG++AGLV+R ++PIPE   S+D  E             IN+ERHSQRCD ELKL
Sbjct: 479  SIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKL 538

Query: 539  SVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            SVAR M++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLG+
Sbjct: 539  SVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGR 591


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  359 bits (922), Expect = 4e-97
 Identities = 167/232 (71%), Positives = 194/232 (83%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            +RPAF H FK  A+ PGQ+ VKKYG +ECDP+VL GLD+T +HM+IPY+PMLVPPK+WKG
Sbjct: 357  IRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKG 416

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGG+ FLPSY+MRTHGS RQQDA++ +  KQMQKV+EALD LG+TKWRVNR +L+VVE
Sbjct: 417  YDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVE 476

Query: 362  NLWAAGGDVAGLVNRENVPIPELLSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKLS 541
            +LWA GG+ AGLV+R++VPIPE    D  E+            INQE HSQRCDVELKLS
Sbjct: 477  SLWAQGGNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLS 536

Query: 542  VARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            VAR MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGK
Sbjct: 537  VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 588


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  359 bits (922), Expect = 4e-97
 Identities = 167/232 (71%), Positives = 194/232 (83%)
 Frame = +2

Query: 2    VRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKG 181
            +RPAF H FK  A+ PGQ+ VKKYG +ECDP+VL GLD+T +HM+IPY+PMLVPPK+WKG
Sbjct: 357  IRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKG 416

Query: 182  YDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVE 361
            YDKGG+ FLPSY+MRTHGS RQQDA++ +  KQMQKV+EALD LG+TKWRVNR +L+VVE
Sbjct: 417  YDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVE 476

Query: 362  NLWAAGGDVAGLVNRENVPIPELLSDDEKEIXXXXXXXXXXXXINQERHSQRCDVELKLS 541
            +LWA GG+ AGLV+R++VPIPE    D  E+            INQE HSQRCDVELKLS
Sbjct: 477  SLWAQGGNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLS 536

Query: 542  VARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGK 697
            VAR MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGK
Sbjct: 537  VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 588