BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha23_contig00009045
         (611 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus...   254   2e-88
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   244   1e-83
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   241   2e-82
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   246   2e-82
emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]            246   2e-82
emb|CAJ13818.1| DNA-dependent RNA polymerase 1 [Chrysanthemum x ...   243   4e-82
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   240   1e-81
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]       240   5e-81
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   242   7e-81
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              242   7e-81
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...   236   3e-80
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   239   4e-80
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   237   6e-80
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   238   1e-79
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   236   3e-79
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...   237   3e-78
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...   228   3e-77
ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thal...   228   3e-77
dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA pol...   228   3e-77
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   231   6e-77

>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus guttatus]
          Length = 941

 Score =  254 bits (649), Expect(2) = 2e-88
 Identities = 118/127 (92%), Positives = 123/127 (96%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRG+LEFA+GRPLGKSGLRWLKIH+ANLYGGGVEKLSYD RV+FVENN
Sbjct: 528 MHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENN 587

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           I+EI DSADNSLNGNRWWLKAEDPFQCLAACINL EALKS SPHTVISHLPIHQDGSCNG
Sbjct: 588 ISEIFDSADNSLNGNRWWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNG 647

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 648 LQHYAAL 654



 Score = 98.2 bits (243), Expect(2) = 2e-88
 Identities = 51/75 (68%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPE-LLSDDDKEIXXXXXXXXXXXXINQERHSQ 178
           +RIL+VVEN+WAAGG+IAGLVNRE++PIPE LLS+D KE             INQERHSQ
Sbjct: 434 KRILTVVENIWAAGGNIAGLVNREDIPIPELLLSEDMKEAKKWKWSVRKVKKINQERHSQ 493

Query: 179 RCDVELKLSVARNMK 223
           RCD ELKLSVAR MK
Sbjct: 494 RCDTELKLSVARKMK 508


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
           AltName: Full=NsRpoT-C; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3;
           Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
           RecName: Full=DNA-directed RNA polymerase 3A,
           chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
           Full=T7 bacteriophage-type single subunit RNA polymerase
           3A; Flags: Precursor gi|21425641|emb|CAC82576.3|
           phage-type RNA polymerase [Nicotiana sylvestris]
           gi|21425679|emb|CAC95027.2| plastid RNA polymerase
           [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 977

 Score =  244 bits (624), Expect(2) = 1e-83
 Identities = 113/127 (88%), Positives = 121/127 (95%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRGILEFA+GRPLGKSGLRWLKIHLA+LY GG+EKL YDAR++FVEN+
Sbjct: 564 MHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENH 623

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           I +ILDSA+N LNGNRWWL AEDPFQCLAACINLSEALKSSSPHTV SHLPIHQDGSCNG
Sbjct: 624 IDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNG 683

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 684 LQHYAAL 690



 Score = 91.7 bits (226), Expect(2) = 1e-83
 Identities = 46/74 (62%), Positives = 55/74 (74%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELLSDDDKEIXXXXXXXXXXXXINQERHSQR 181
           +RILSVVE++WA GG+IAGLV+R++VPIPEL SDD  E+            INQE HSQR
Sbjct: 471 KRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKINQELHSQR 530

Query: 182 CDVELKLSVARNMK 223
           CD ELKLSVAR +K
Sbjct: 531 CDTELKLSVARKLK 544


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Solanum tuberosum]
          Length = 1015

 Score =  241 bits (616), Expect(2) = 2e-82
 Identities = 111/127 (87%), Positives = 119/127 (93%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRGILEFA+GRPLGKSGLRWLK+HLA+LY GG+EKL YDAR++FVEN+
Sbjct: 602 MHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENH 661

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           I +ILDSA N LNGNRWWL AEDP QCLAACINLSEALKS SPHTVISHLPIHQDGSCNG
Sbjct: 662 IDDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEALKSPSPHTVISHLPIHQDGSCNG 721

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 722 LQHYAAL 728



 Score = 91.3 bits (225), Expect(2) = 2e-82
 Identities = 46/74 (62%), Positives = 55/74 (74%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELLSDDDKEIXXXXXXXXXXXXINQERHSQR 181
           +RILSVVE++WA GG+IAGLV+R++VPIPEL SDD  E+            INQE HSQR
Sbjct: 509 KRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQELHSQR 568

Query: 182 CDVELKLSVARNMK 223
           CD ELKLSVAR +K
Sbjct: 569 CDTELKLSVARKLK 582


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
           AltName: Full=NictaRpoT3-tom; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3B;
           Flags: Precursor gi|21425667|emb|CAC95021.2| chloroplast
           RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score =  246 bits (629), Expect(2) = 2e-82
 Identities = 115/127 (90%), Positives = 122/127 (96%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRGILEFA+GRPLGKSGLRWLKIHLA+LY GGVEKL YDAR++FVEN+
Sbjct: 564 MHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENH 623

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           I +ILDSA+N LNGNRWWL AEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG
Sbjct: 624 IHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 683

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 684 LQHYAAL 690



 Score = 86.3 bits (212), Expect(2) = 2e-82
 Identities = 45/75 (60%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELL-SDDDKEIXXXXXXXXXXXXINQERHSQ 178
           +RIL+VVE++WA GG+IAGLV+R++VPIPEL  SDD  E+            INQE HSQ
Sbjct: 470 KRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQ 529

Query: 179 RCDVELKLSVARNMK 223
           RCD ELKLSVAR +K
Sbjct: 530 RCDTELKLSVARKLK 544


>emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]
          Length = 557

 Score =  246 bits (629), Expect(2) = 2e-82
 Identities = 115/127 (90%), Positives = 122/127 (96%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRGILEFA+GRPLGKSGLRWLKIHLA+LY GGVEKL YDAR++FVEN+
Sbjct: 147 MHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENH 206

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           I +ILDSA+N LNGNRWWL AEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG
Sbjct: 207 IHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 266

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 267 LQHYAAL 273



 Score = 86.3 bits (212), Expect(2) = 2e-82
 Identities = 45/75 (60%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELL-SDDDKEIXXXXXXXXXXXXINQERHSQ 178
           +RIL+VVE++WA GG+IAGLV+R++VPIPEL  SDD  E+            INQE HSQ
Sbjct: 53  KRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQ 112

Query: 179 RCDVELKLSVARNMK 223
           RCD ELKLSVAR +K
Sbjct: 113 RCDTELKLSVARKLK 127


>emb|CAJ13818.1| DNA-dependent RNA polymerase 1 [Chrysanthemum x morifolium]
          Length = 383

 Score =  243 bits (621), Expect(2) = 4e-82
 Identities = 111/127 (87%), Positives = 121/127 (95%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRGILEFA+GRPLGKSGLRWL+IHLANLYG GVEKLSYD R++FVE++
Sbjct: 147 MHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLRIHLANLYGSGVEKLSYDGRLAFVESH 206

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           I+EI+DSADN L GNRWWL AEDPFQCLAACINL+E LKSSSPHTVISHLP+HQDGSCNG
Sbjct: 207 ISEIIDSADNPLGGNRWWLTAEDPFQCLAACINLAETLKSSSPHTVISHLPVHQDGSCNG 266

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 267 LQHYAAL 273



 Score = 88.2 bits (217), Expect(2) = 4e-82
 Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELLSDDDKEIXXXXXXXXXXXXINQERHSQR 181
           +R+L+VVE++WAAGGDIAGLVNR++V IP+L S+D  EI            +NQE HSQR
Sbjct: 53  KRLLNVVESIWAAGGDIAGLVNRQDVSIPDLNSEDSSEIKEWRWSVRKAKKMNQELHSQR 112

Query: 182 CDVELKLS-VARNMK 223
           CD+ELKLS VAR MK
Sbjct: 113 CDIELKLSVVARRMK 127


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Solanum lycopersicum]
          Length = 1007

 Score =  240 bits (612), Expect(2) = 1e-81
 Identities = 110/127 (86%), Positives = 119/127 (93%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRGILEFA+GRPLGKSGLRWLK+HLA+LY GG+EKL YDAR++FVEN+
Sbjct: 594 MHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENH 653

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           I +ILDSA N LNGNRWWL AEDP QCLAACINLSEA+KS SPHTVISHLPIHQDGSCNG
Sbjct: 654 IDDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEAVKSLSPHTVISHLPIHQDGSCNG 713

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 714 LQHYAAL 720



 Score = 89.7 bits (221), Expect(2) = 1e-81
 Identities = 45/74 (60%), Positives = 54/74 (72%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELLSDDDKEIXXXXXXXXXXXXINQERHSQR 181
           +RILSVVE +WA GG+IAGLV+R++VPIPEL SDD  E+            INQE HSQR
Sbjct: 501 KRILSVVETIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQELHSQR 560

Query: 182 CDVELKLSVARNMK 223
           CD ELKLSVAR ++
Sbjct: 561 CDTELKLSVARKLR 574


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score =  240 bits (613), Expect(2) = 5e-81
 Identities = 110/127 (86%), Positives = 120/127 (94%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRGILEF++GRPLGKSGL WLK+HLANL+GGGV+KL YD R+SFVENN
Sbjct: 539 MHPHLNHLSSDLCRGILEFSEGRPLGKSGLYWLKLHLANLFGGGVQKLPYDERLSFVENN 598

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           I E+ DSADN L+GNRWWLKAEDPFQ LAACIN+SEAL+SSSPHTVISHLPIHQDGSCNG
Sbjct: 599 ITEVFDSADNPLSGNRWWLKAEDPFQFLAACINISEALRSSSPHTVISHLPIHQDGSCNG 658

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 659 LQHYAAL 665



 Score = 87.4 bits (215), Expect(2) = 5e-81
 Identities = 46/74 (62%), Positives = 52/74 (70%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELLSDDDKEIXXXXXXXXXXXXINQERHSQR 181
           + ILSVVE++WAAGG+IAGLVNRE+VP+PEL SDD  EI             N E HS R
Sbjct: 446 KSILSVVEDIWAAGGNIAGLVNREDVPLPELHSDDPIEIKKWKFSIRKAKKNNMEMHSLR 505

Query: 182 CDVELKLSVARNMK 223
           CD ELKLSVAR MK
Sbjct: 506 CDTELKLSVARAMK 519


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score =  242 bits (617), Expect(2) = 7e-81
 Identities = 110/127 (86%), Positives = 120/127 (94%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRG+LEFA+GRPLGKSGLRWLKI LANLY GGVEKLSYD R++FV+N+
Sbjct: 566 MHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNH 625

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           + ++ DSADN LNGNRWWL AEDPFQCLAACINLSEAL+SSSPHTVISHLPIHQDGSCNG
Sbjct: 626 LDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNG 685

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 686 LQHYAAL 692



 Score = 85.5 bits (210), Expect(2) = 7e-81
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELLSDDD-KEIXXXXXXXXXXXXINQERHSQ 178
           RR+LSVVE++WA GG++ GLV+RENVP+PE  S +D  EI            INQERHS 
Sbjct: 472 RRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSL 531

Query: 179 RCDVELKLSVARNMK 223
           RCD E+KLSVAR MK
Sbjct: 532 RCDTEIKLSVARKMK 546


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  242 bits (617), Expect(2) = 7e-81
 Identities = 110/127 (86%), Positives = 120/127 (94%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRG+LEFA+GRPLGKSGLRWLKI LANLY GGVEKLSYD R++FV+N+
Sbjct: 395 MHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNH 454

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           + ++ DSADN LNGNRWWL AEDPFQCLAACINLSEAL+SSSPHTVISHLPIHQDGSCNG
Sbjct: 455 LDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNG 514

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 515 LQHYAAL 521



 Score = 85.5 bits (210), Expect(2) = 7e-81
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELLSDDD-KEIXXXXXXXXXXXXINQERHSQ 178
           RR+LSVVE++WA GG++ GLV+RENVP+PE  S +D  EI            INQERHS 
Sbjct: 301 RRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSL 360

Query: 179 RCDVELKLSVARNMK 223
           RCD E+KLSVAR MK
Sbjct: 361 RCDTEIKLSVARKMK 375


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
           gi|462398756|gb|EMJ04424.1| hypothetical protein
           PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  236 bits (601), Expect(2) = 3e-80
 Identities = 108/127 (85%), Positives = 117/127 (92%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRG+LEFA+GRPLGKSGLRWLKIHLANLY GGVEKLSY+ R++FV+N+
Sbjct: 563 MHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNH 622

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           I +I DSA N +NGNRWWL AEDP QCLAACINLSEAL S SPHTVISHLPIHQDGSCNG
Sbjct: 623 IDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNG 682

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 683 LQHYAAL 689



 Score = 89.7 bits (221), Expect(2) = 3e-80
 Identities = 46/75 (61%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELL-SDDDKEIXXXXXXXXXXXXINQERHSQ 178
           +++LSVVE++WA GG+IAGLVNRE+VP+P+   S+D KEI            INQERHSQ
Sbjct: 469 KKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQ 528

Query: 179 RCDVELKLSVARNMK 223
           RCD ELKLSVAR MK
Sbjct: 529 RCDTELKLSVARKMK 543


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Fragaria vesca subsp. vesca]
          Length = 973

 Score =  239 bits (610), Expect(2) = 4e-80
 Identities = 110/127 (86%), Positives = 117/127 (92%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRG+LEFA+GRPLGKSGLRWLKIHLANLY GGVEKLSYD R+SFV+N+
Sbjct: 560 MHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNH 619

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           I +I DSA N +NGNRWWL AEDP QCLAACINLSEAL S SPHTVISHLPIHQDGSCNG
Sbjct: 620 IDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNG 679

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 680 LQHYAAL 686



 Score = 85.5 bits (210), Expect(2) = 4e-80
 Identities = 43/75 (57%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPEL-LSDDDKEIXXXXXXXXXXXXINQERHSQ 178
           +++L+VVE++WA GG+IAGLV+RE+VP+PE   S+D  EI            +NQERHSQ
Sbjct: 466 KKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQ 525

Query: 179 RCDVELKLSVARNMK 223
           RCD ELKLSVAR MK
Sbjct: 526 RCDTELKLSVARRMK 540


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 882

 Score =  237 bits (604), Expect(2) = 6e-80
 Identities = 108/127 (85%), Positives = 118/127 (92%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHL HLSSDLCRG+LEF +GRPLGKSGLRWLKIHLANLY GGVEKLS+D R++FVEN+
Sbjct: 469 MHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENH 528

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           ++EI DSA N +NG RWWLKAEDPFQCLAACINLSEAL S+SPHTVISHLPIHQDGSCNG
Sbjct: 529 LSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNG 588

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 589 LQHYAAL 595



 Score = 87.4 bits (215), Expect(2) = 6e-80
 Identities = 45/75 (60%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELLSDDD-KEIXXXXXXXXXXXXINQERHSQ 178
           RR+L VVE +W +GG+IAGLV+RE++PIPE  S DD  EI            INQERHSQ
Sbjct: 375 RRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQ 434

Query: 179 RCDVELKLSVARNMK 223
           RCD ELKLSVAR +K
Sbjct: 435 RCDTELKLSVARKLK 449


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Citrus sinensis]
          Length = 1009

 Score =  238 bits (608), Expect(2) = 1e-79
 Identities = 108/127 (85%), Positives = 121/127 (95%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSD+CRG+LEFA+GRPLGKSGLRWLKIHLANL+ GGVEKLS+D R++FVEN+
Sbjct: 596 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 655

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           + EI DSA+N +NG+RWWL AEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNG
Sbjct: 656 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 715

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 716 LQHYAAL 722



 Score = 85.1 bits (209), Expect(2) = 1e-79
 Identities = 43/75 (57%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPEL-LSDDDKEIXXXXXXXXXXXXINQERHSQ 178
           +++LSV+E++W +GG+IAGLV+R +VPIPE  LS+D  E+            INQERHSQ
Sbjct: 502 KQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 561

Query: 179 RCDVELKLSVARNMK 223
           RCD ELKLSVAR MK
Sbjct: 562 RCDTELKLSVARRMK 576


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
           gi|222854390|gb|EEE91937.1| hypothetical protein
           POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  236 bits (603), Expect(2) = 3e-79
 Identities = 108/127 (85%), Positives = 119/127 (93%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHL HLSSDLCRG+LEFA+GRPLGKSGL WLKIHLANLY GGVEKLS+D R++FVEN+
Sbjct: 569 MHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENH 628

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           ++EI DSA+N +NG RWWL AEDPFQCLAACINLSEALKS+SPHTVISHLPIHQDGSCNG
Sbjct: 629 LSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNG 688

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 689 LQHYAAL 695



 Score = 85.5 bits (210), Expect(2) = 3e-79
 Identities = 44/74 (59%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = +2

Query: 5   RILSVVENLWAAGGDIAGLVNRENVPIPELLSDDD-KEIXXXXXXXXXXXXINQERHSQR 181
           ++L VVE +WA+GG+ AGLVNR ++PIPE LS DD  EI            INQERHSQR
Sbjct: 476 KVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQR 535

Query: 182 CDVELKLSVARNMK 223
           CD ELKLSVAR +K
Sbjct: 536 CDTELKLSVARKLK 549


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
           gi|557556792|gb|ESR66806.1| hypothetical protein
           CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score =  237 bits (605), Expect(2) = 3e-78
 Identities = 107/127 (84%), Positives = 121/127 (95%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSD+CRG+LEFA+GRPLGKSGLRWLKIHLANL+ GGVEKLS+D R++FVEN+
Sbjct: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           + EI DSA+N +NG+RWWL AEDPFQCLAACINL+EALKSSSPH+VISHLPIHQDGSCNG
Sbjct: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNG 718

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 719 LQHYAAL 725



 Score = 81.3 bits (199), Expect(2) = 3e-78
 Identities = 42/75 (56%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPEL-LSDDDKEIXXXXXXXXXXXXINQERHSQ 178
           +++LSV+E++W +GG+IAGLV+R +V IPE  LS+D  E+            INQERHSQ
Sbjct: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564

Query: 179 RCDVELKLSVARNMK 223
           RCD ELKLSVAR MK
Sbjct: 565 RCDTELKLSVARRMK 579


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
           gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
           Full=DNA-directed RNA polymerase 3, chloroplastic;
           Flags: Precursor gi|2330560|emb|CAA69972.1| chloroplast
           single-subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|2330564|emb|CAA69717.1| chloroplast
           single-subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
           subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|110739160|dbj|BAF01496.1| chloroplast
           single subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
           polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score =  228 bits (582), Expect(2) = 3e-77
 Identities = 103/127 (81%), Positives = 119/127 (93%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRG LEFA+GRPLGKSGL WLKIHLANLY GGVEKLS+DAR++FVEN+
Sbjct: 580 MHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENH 639

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           + +I+DSA+N ++G RWWLKAEDPFQCLAAC+ L++ALKS SP++VISHLPIHQDGSCNG
Sbjct: 640 LDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNG 699

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 700 LQHYAAL 706



 Score = 86.7 bits (213), Expect(2) = 3e-77
 Identities = 47/75 (62%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPEL-LSDDDKEIXXXXXXXXXXXXINQERHSQ 178
           R IL VVE LWA GG+IAGLVNRE+VPIPE   S+D +E+            IN+ERHS 
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545

Query: 179 RCDVELKLSVARNMK 223
           RCDVELKLSVAR MK
Sbjct: 546 RCDVELKLSVARKMK 560


>ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
           gi|330252436|gb|AEC07530.1| DNA-directed RNA polymerase
           3 [Arabidopsis thaliana]
          Length = 895

 Score =  228 bits (582), Expect(2) = 3e-77
 Identities = 103/127 (81%), Positives = 119/127 (93%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRG LEFA+GRPLGKSGL WLKIHLANLY GGVEKLS+DAR++FVEN+
Sbjct: 580 MHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENH 639

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           + +I+DSA+N ++G RWWLKAEDPFQCLAAC+ L++ALKS SP++VISHLPIHQDGSCNG
Sbjct: 640 LDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNG 699

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 700 LQHYAAL 706



 Score = 86.7 bits (213), Expect(2) = 3e-77
 Identities = 47/75 (62%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPEL-LSDDDKEIXXXXXXXXXXXXINQERHSQ 178
           R IL VVE LWA GG+IAGLVNRE+VPIPE   S+D +E+            IN+ERHS 
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545

Query: 179 RCDVELKLSVARNMK 223
           RCDVELKLSVAR MK
Sbjct: 546 RCDVELKLSVARKMK 560


>dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA polymerase
           [Arabidopsis thaliana]
          Length = 786

 Score =  228 bits (582), Expect(2) = 3e-77
 Identities = 103/127 (81%), Positives = 119/127 (93%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRG LEFA+GRPLGKSGL WLKIHLANLY GGVEKLS+DAR++FVEN+
Sbjct: 580 MHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENH 639

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           + +I+DSA+N ++G RWWLKAEDPFQCLAAC+ L++ALKS SP++VISHLPIHQDGSCNG
Sbjct: 640 LDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNG 699

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 700 LQHYAAL 706



 Score = 86.7 bits (213), Expect(2) = 3e-77
 Identities = 47/75 (62%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPEL-LSDDDKEIXXXXXXXXXXXXINQERHSQ 178
           R IL VVE LWA GG+IAGLVNRE+VPIPE   S+D +E+            IN+ERHS 
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545

Query: 179 RCDVELKLSVARNMK 223
           RCDVELKLSVAR MK
Sbjct: 546 RCDVELKLSVARKMK 560


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score =  231 bits (590), Expect(2) = 6e-77
 Identities = 105/127 (82%), Positives = 118/127 (92%)
 Frame = +1

Query: 229 MHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENN 408
           MHPHLNHLSSDLCRG+LEFA+GRPLGKSGL WLKIHLANLY GGVEKLSYD R++FV+++
Sbjct: 562 MHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDH 621

Query: 409 IAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNG 588
           +  I DSA N +NG+RWWL AEDPFQCLAAC+NLSEALKSS+PHTVIS+LPIHQDGSCNG
Sbjct: 622 LDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNG 681

Query: 589 LQHYAAL 609
           LQHYAAL
Sbjct: 682 LQHYAAL 688



 Score = 82.8 bits (203), Expect(2) = 6e-77
 Identities = 44/74 (59%), Positives = 51/74 (68%)
 Frame = +2

Query: 2   RRILSVVENLWAAGGDIAGLVNRENVPIPELLSDDDKEIXXXXXXXXXXXXINQERHSQR 181
           R +LSVVE+LWA GG+ AGLV+R++VPIPE    D  E+            INQE HSQR
Sbjct: 469 RSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQR 528

Query: 182 CDVELKLSVARNMK 223
           CDVELKLSVAR MK
Sbjct: 529 CDVELKLSVARKMK 542