BLASTX nr result

ID: Mentha23_contig00008883 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha23_contig00008883
         (413 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003614205.1| F-box/kelch-repeat protein [Medicago truncat...    60   3e-07
ref|XP_003614204.1| F-box protein [Medicago truncatula] gi|35551...    58   2e-06
ref|XP_002516804.1| conserved hypothetical protein [Ricinus comm...    56   6e-06
ref|XP_002308788.2| hypothetical protein POPTR_0006s01370g [Popu...    55   8e-06

>ref|XP_003614205.1| F-box/kelch-repeat protein [Medicago truncatula]
           gi|357487837|ref|XP_003614206.1| F-box/kelch-repeat
           protein [Medicago truncatula]
           gi|355515540|gb|AES97163.1| F-box/kelch-repeat protein
           [Medicago truncatula] gi|355515541|gb|AES97164.1|
           F-box/kelch-repeat protein [Medicago truncatula]
          Length = 351

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
 Frame = -2

Query: 370 LSVLRGMLCVSLNHEEFCEVWVMEEYGVAKSWAKKFSFKYFDPDSGIKLKPILPLYLYEN 191
           L VLR  LC+ +  +   +VW+M+EYG+ +SW K +S  +     G ++  I  LY++E+
Sbjct: 246 LEVLRDCLCIYVTSDLDLDVWIMKEYGIKESWTKLYSVSFV----GGQMYDIRTLYIFEH 301

Query: 190 GEILVIAGDVGCRRRTFVY--KDEETTPQEVKIGSSLGYAFLYVDSLVA 50
            +ILV   D    +   VY  K +    Q+++ GS L    +Y++SL++
Sbjct: 302 DQILVELHDWERTQHLIVYDSKIDTFNIQDIENGSLLKNPKVYIESLIS 350


>ref|XP_003614204.1| F-box protein [Medicago truncatula] gi|355515539|gb|AES97162.1|
           F-box protein [Medicago truncatula]
          Length = 254

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
 Frame = -2

Query: 370 LSVLRGMLCVSLNHEEFCEVWVMEEYGVAKSWAKKFSFKYFDPDSGIKLKPILPLYLYEN 191
           L VLR  LC+ +  +   +VW+M+EY + +SW K +S  +     G ++  I  LY++E+
Sbjct: 149 LEVLRDCLCIYVTSDLDLDVWIMKEYAIKESWTKLYSVSFV----GGQMYDIRTLYIFEH 204

Query: 190 GEILVIAGDVGCRRRTFVY--KDEETTPQEVKIGSSLGYAFLYVDSLVA 50
            +ILV   D    +   VY  K +    Q+++ GS L    +Y++SL++
Sbjct: 205 DQILVELHDWERTQHLIVYDSKIDTFNIQDIENGSLLKNPKVYIESLIS 253


>ref|XP_002516804.1| conserved hypothetical protein [Ricinus communis]
           gi|223543892|gb|EEF45418.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 316

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
 Frame = -2

Query: 397 YSPVMCRARLSVLRGMLCVSLN-HEEFCEVWVMEEYGVAKSWAKKFSFKYFDPDSGIKLK 221
           Y  ++    L VL G LCV  N H    + WVM+EYGV +SW +  +  Y D    + L+
Sbjct: 198 YGELVYDRTLGVLDGCLCVMCNYHAVRADFWVMKEYGVRESWIRLVTVPYLDYPGSLHLQ 257

Query: 220 PILPLYLYENGEILVIAGDVGCRRRTFVYKDEETTPQEVKIGSSLGY--AFLYVDSLVA 50
             +P  + +NGE+L     +  +    +Y     T +   I +S  +  A +Y+DSLV+
Sbjct: 258 YSVPYAIADNGEVL-----LEFKSSLVIYNPNYGTFKYPVINNSCSWVDAEVYIDSLVS 311


>ref|XP_002308788.2| hypothetical protein POPTR_0006s01370g [Populus trichocarpa]
           gi|550335216|gb|EEE92311.2| hypothetical protein
           POPTR_0006s01370g [Populus trichocarpa]
          Length = 411

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
 Frame = -2

Query: 370 LSVLRGMLCVSLNHEEFC-EVWVMEEYGVAKSWAKKFSFKYFDPDSGIK-LKPILPLYLY 197
           + VL G LCV  N+E  C +VWVM+EYGV +SW K FS       S    L+P+    +Y
Sbjct: 266 VGVLEGNLCVMCNYEHVCVDVWVMKEYGVKESWCKMFSVHAIKWISAFMFLRPL----VY 321

Query: 196 ENGEILVIAGDVGCRRRTFVYKDEETTPQEVKIGSSLGYAFLYVDSLVAL 47
             G  +V+    G +   + +K++      V+ G S   + +YV+SL+ +
Sbjct: 322 SKGGDMVLLEVNGEKLLWYDWKNKHAKVVRVRGGPSSFGSEMYVESLIRI 371


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