BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha23_contig00000494
         (1190 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   448   e-123
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   357   4e-96
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              351   4e-94
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   347   4e-93
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   347   4e-93
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   347   4e-93
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   346   1e-92
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   335   2e-89
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   335   2e-89
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   335   2e-89
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   330   6e-88
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   327   8e-87
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   325   2e-86
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   322   2e-85
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   320   1e-84
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   317   5e-84
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,...   310   1e-81
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   305   2e-80
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   304   6e-80
ref|XP_007144359.1| hypothetical protein PHAVU_007G149600g [Phas...   302   2e-79

>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  448 bits (1152), Expect = e-123
 Identities = 249/406 (61%), Positives = 297/406 (73%), Gaps = 11/406 (2%)
 Frame = -3

Query: 1185 SSVLLLHEQVXXXXXXXXXXXXXXXS---VLFQDQRND-KPLLCLKEDITFQKPLDRQLA 1018
            SSVLLLHEQV               +   VL QDQRN+ +PLL LK+D TFQ+  DR+  
Sbjct: 28   SSVLLLHEQVTPALTSLSTPSLARHTTTSVLIQDQRNESRPLLSLKDDNTFQQTFDRRQM 87

Query: 1017 PV----SSSHEGSEDVDPHRHVDDIELQLLRRPELWYLLASLRKKETTFPLTAV-SISSK 853
                  SSS+EG++ +DP ++ +D++LQLLRRPELWYL +SL+KKE  FP T   S+ S 
Sbjct: 88   VTTPASSSSNEGNDKIDPDQYDNDLQLQLLRRPELWYLWSSLQKKEHPFPTTTPNSLPST 147

Query: 852  SEESTGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSSTRGLASDPV--IVRS 679
            +E  TG EA+HV+ LAREAFSA K+A  IA+DA +     D+SSSTR L   PV  IVRS
Sbjct: 148  AENVTGAEANHVLALAREAFSACKEAASIAEDARL----YDNSSSTRSLVGSPVQRIVRS 203

Query: 678  TRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXX 499
             R LERQAKRR  PKP++E  E NH RK   H+K    +DPNDPLRLFL GP        
Sbjct: 204  KRRLERQAKRR-APKPQLEDQEMNHRRKLEPHKKSSEGYDPNDPLRLFLWGPETTQLLSA 262

Query: 498  XXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQK 319
                 LI KIQ+LMKLQ V++RL  QFS EPT++EWAAAVGIS Q+L+ Q++ GN SR+K
Sbjct: 263  KEEADLIAKIQELMKLQEVRSRLQTQFSREPTLVEWAAAVGISTQALQFQVNCGNFSREK 322

Query: 318  LIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQG 139
            LIYANFR+VV+IAKQYQGRGLNLQDLLQ GS+GLMKSVEKFKP  GCRFATYAYWWIRQ 
Sbjct: 323  LIYANFRLVVYIAKQYQGRGLNLQDLLQLGSMGLMKSVEKFKPLVGCRFATYAYWWIRQS 382

Query: 138  IRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
            IRK++FQHSRTIRLPEN+Y LLSKVYEAKKTC +QGN  P++EDIA
Sbjct: 383  IRKSLFQHSRTIRLPENVYTLLSKVYEAKKTCIKQGNHQPTKEDIA 428


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  357 bits (917), Expect = 4e-96
 Identities = 209/408 (51%), Positives = 266/408 (65%), Gaps = 12/408 (2%)
 Frame = -3

Query: 1188 SSSVLLLHEQVXXXXXXXXXXXXXXXS---VLFQDQRND-KPLL-CLKEDITFQKPLDR- 1027
            S+SVL+LHEQ                    VL Q+QR++ KPLL  LKED T +  LDR 
Sbjct: 30   STSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLLHVLKEDKTSEAALDRM 89

Query: 1026 QLAPVSSSHEGSEDVDPHRHVDDIELQLLRRPELWYLLASLRKKETTFPLTAVSISSKSE 847
            Q+   +S HE  +  D +  V+  + QLL    L    +     + + PLT  S+++ S 
Sbjct: 90   QIETGASVHEDLDIDDFYPLVNSSKPQLLNHDILDVFSSLQTGAKPSTPLTLESLTTASN 149

Query: 846  ESTGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDD---SSSTRGLASDPVIVRST 676
            +   +E  +VV LA++A SAS++A  +A+D+   G + DD   +S    +  +   VRST
Sbjct: 150  KHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDDLGYTSLANWIVEEEKTVRST 209

Query: 675  RLLERQAKR---RRVPKPKVEFLETNHHRKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXX 505
            R+LER+ KR   R+VPK KV   E+N        +K+   F+PNDPLRLFL GP      
Sbjct: 210  RILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLL 269

Query: 504  XXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISR 325
                   LI ++QDL KL+ VK+RL  QF  EPT++EWA AVGISCQ LKSQ+  G  SR
Sbjct: 270  TAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSR 329

Query: 324  QKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIR 145
            +KLIYAN RMVVHIAKQYQGRGL LQDL+QEGS+GLMKSVEKFKPQAGCRFATYAYWWIR
Sbjct: 330  EKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIR 389

Query: 144  QGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
            Q +RKAIFQHSRTIRLPEN+Y LL KV EAKK+C Q+GN NP++E++A
Sbjct: 390  QTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELA 437


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  351 bits (900), Expect = 4e-94
 Identities = 207/410 (50%), Positives = 278/410 (67%), Gaps = 14/410 (3%)
 Frame = -3

Query: 1188 SSSVLLLHEQVXXXXXXXXXXXXXXXS--VLFQDQRND-KPL-LCLKEDITFQKPLD-RQ 1024
            SSSVL+LH+QV                  VL Q+QR++ +P    LK++ TFQ  L+ RQ
Sbjct: 24   SSSVLMLHDQVAPAVASIPTTIARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQ 83

Query: 1023 LAPVSSSHEGSEDVDPHRHVDDIELQLLRRPELWYLLASLRKKETTFPLTAV--SISSKS 850
            +  V S+ E + D D ++++ + E QLL +P LWY L S +  E +   +++  SI++  
Sbjct: 84   MEIVVSADEENSD-DHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDI 142

Query: 849  EESTGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSS-TRGLASDPVI----- 688
            E S  ++   V+ LA++A SASK+A+ + ++A + G +++DS S + G  S P +     
Sbjct: 143  ENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEK 202

Query: 687  -VRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKLDSRFDPNDPLRLFLRGPXXXX 511
             VRSTRLLER++K+RR   PKV   E +  R+    RK++  +DP DPLRLFL GP    
Sbjct: 203  TVRSTRLLERRSKKRR--NPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRK 260

Query: 510  XXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNI 331
                     LI++IQ+LM+L+ VK RL +    EPT++EWA AVG+SCQ L+SQ+H GN 
Sbjct: 261  LLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNR 320

Query: 330  SRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWW 151
            SRQKLIYAN RMVVHIAKQYQGRGLNLQDLLQEGS+GLM SVEKFKP AGCRFA+YAYWW
Sbjct: 321  SRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWW 380

Query: 150  IRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
            IRQ +RKAIFQHSRTIRLPEN+Y LL KV EAK+   Q+G+ +P++E+IA
Sbjct: 381  IRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIA 430


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  347 bits (891), Expect = 4e-93
 Identities = 195/376 (51%), Positives = 254/376 (67%), Gaps = 7/376 (1%)
 Frame = -3

Query: 1107 VLFQDQRND-KPLLCL-KEDITFQKPLD-RQLAPVSSSHEGSEDVDPHRHVDDIELQLLR 937
            VL Q+QR++ +PLL + KED T Q   D R +   +   E     D  + V D+E Q L 
Sbjct: 55   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 114

Query: 936  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 760
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 115  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 174

Query: 759  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 589
            +  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + RK  
Sbjct: 175  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKAS 234

Query: 588  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCE 409
              +KL   FD NDPLRLFL GP             LI +IQDL++L+  K++L +QF  E
Sbjct: 235  VKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 294

Query: 408  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 229
            PT++EWA A+G+SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 295  PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 354

Query: 228  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 49
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 355  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 414

Query: 48   TCFQQGNRNPSREDIA 1
               Q+GN +P +ED+A
Sbjct: 415  LYIQEGNHSPDKEDLA 430


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  347 bits (891), Expect = 4e-93
 Identities = 195/376 (51%), Positives = 254/376 (67%), Gaps = 7/376 (1%)
 Frame = -3

Query: 1107 VLFQDQRND-KPLLCL-KEDITFQKPLD-RQLAPVSSSHEGSEDVDPHRHVDDIELQLLR 937
            VL Q+QR++ +PLL + KED T Q   D R +   +   E     D  + V D+E Q L 
Sbjct: 63   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 122

Query: 936  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 760
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 123  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 182

Query: 759  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 589
            +  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + RK  
Sbjct: 183  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKAS 242

Query: 588  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCE 409
              +KL   FD NDPLRLFL GP             LI +IQDL++L+  K++L +QF  E
Sbjct: 243  VKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 302

Query: 408  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 229
            PT++EWA A+G+SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 303  PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 362

Query: 228  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 49
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 363  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 422

Query: 48   TCFQQGNRNPSREDIA 1
               Q+GN +P +ED+A
Sbjct: 423  LYIQEGNHSPDKEDLA 438


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  347 bits (891), Expect = 4e-93
 Identities = 195/376 (51%), Positives = 254/376 (67%), Gaps = 7/376 (1%)
 Frame = -3

Query: 1107 VLFQDQRND-KPLLCL-KEDITFQKPLD-RQLAPVSSSHEGSEDVDPHRHVDDIELQLLR 937
            VL Q+QR++ +PLL + KED T Q   D R +   +   E     D  + V D+E Q L 
Sbjct: 64   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 123

Query: 936  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 760
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 124  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 183

Query: 759  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 589
            +  ++G    D S T  L     +   VRST+ LER++K+R+V KPKV   ET + RK  
Sbjct: 184  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKAS 243

Query: 588  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCE 409
              +KL   FD NDPLRLFL GP             LI +IQDL++L+  K++L +QF  E
Sbjct: 244  VKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 303

Query: 408  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 229
            PT++EWA A+G+SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 304  PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 363

Query: 228  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 49
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 364  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 423

Query: 48   TCFQQGNRNPSREDIA 1
               Q+GN +P +ED+A
Sbjct: 424  LYIQEGNHSPDKEDLA 439


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  346 bits (888), Expect = 1e-92
 Identities = 204/407 (50%), Positives = 275/407 (67%), Gaps = 14/407 (3%)
 Frame = -3

Query: 1179 VLLLHEQVXXXXXXXXXXXXXXXS--VLFQDQRND-KPL-LCLKEDITFQKPLD-RQLAP 1015
            VL+LH+QV                  VL Q+QR++ +P    LK++ TFQ  L+ RQ+  
Sbjct: 38   VLMLHDQVAPAVASIPTTIARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEI 97

Query: 1014 VSSSHEGSEDVDPHRHVDDIELQLLRRPELWYLLASLRKKETTFPLTAV--SISSKSEES 841
            V S+ E + D D ++++ + E QLL +P LWY L S +  E +   +++  SI++  E S
Sbjct: 98   VVSADEENSD-DHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENS 156

Query: 840  TGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSS-TRGLASDPVI------VR 682
              ++   V+ LA++A SASK+A+ + ++A + G +++DS S + G  S P +      VR
Sbjct: 157  MDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVR 216

Query: 681  STRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXX 502
            STRLLER++K+RR   PKV   E +  R+    RK++  +DP DPLRLFL GP       
Sbjct: 217  STRLLERRSKKRR--NPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLT 274

Query: 501  XXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQ 322
                  LI++IQ+LM+L+ VK RL +    EPT++EWA AVG+SCQ L+SQ+H GN SRQ
Sbjct: 275  AKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQ 334

Query: 321  KLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQ 142
            KLIYAN RMVVHIAKQYQGRGLNLQDLLQEGS+GLM SVEKFKP AGCRFA+YAYWWIRQ
Sbjct: 335  KLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQ 394

Query: 141  GIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
             +RKAIFQHSRTIRLPEN+Y LL KV EAK+   Q+G+ +P++E+IA
Sbjct: 395  AVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIA 441


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  335 bits (860), Expect = 2e-89
 Identities = 192/376 (51%), Positives = 249/376 (66%), Gaps = 7/376 (1%)
 Frame = -3

Query: 1107 VLFQDQRND-KPLLCL-KEDITFQKPLD-RQLAPVSSSHEGSEDVDPHRHVDDIELQLLR 937
            VL Q+QR++ +PLL + KED T Q   D R +   +   E     D  + V D+E Q L 
Sbjct: 55   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 114

Query: 936  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 760
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 115  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 174

Query: 759  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 589
            +  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK  
Sbjct: 175  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKAS 234

Query: 588  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCE 409
              +KL   FDPNDPLRLFL GP             LI +IQDL++L+  K++L +QF  E
Sbjct: 235  VKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 294

Query: 408  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 229
            PT++       +SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 295  PTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 354

Query: 228  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 49
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 355  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 414

Query: 48   TCFQQGNRNPSREDIA 1
               Q+GN +P +ED+A
Sbjct: 415  LYIQEGNHSPDKEDLA 430


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  335 bits (860), Expect = 2e-89
 Identities = 192/376 (51%), Positives = 249/376 (66%), Gaps = 7/376 (1%)
 Frame = -3

Query: 1107 VLFQDQRND-KPLLCL-KEDITFQKPLD-RQLAPVSSSHEGSEDVDPHRHVDDIELQLLR 937
            VL Q+QR++ +PLL + KED T Q   D R +   +   E     D  + V D+E Q L 
Sbjct: 63   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 122

Query: 936  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 760
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 123  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 182

Query: 759  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 589
            +  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK  
Sbjct: 183  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKAS 242

Query: 588  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCE 409
              +KL   FDPNDPLRLFL GP             LI +IQDL++L+  K++L +QF  E
Sbjct: 243  VKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 302

Query: 408  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 229
            PT++       +SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 303  PTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 362

Query: 228  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 49
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 363  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 422

Query: 48   TCFQQGNRNPSREDIA 1
               Q+GN +P +ED+A
Sbjct: 423  LYIQEGNHSPDKEDLA 438


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  335 bits (860), Expect = 2e-89
 Identities = 192/376 (51%), Positives = 249/376 (66%), Gaps = 7/376 (1%)
 Frame = -3

Query: 1107 VLFQDQRND-KPLLCL-KEDITFQKPLD-RQLAPVSSSHEGSEDVDPHRHVDDIELQLLR 937
            VL Q+QR++ +PLL + KED T Q   D R +   +   E     D  + V D+E Q L 
Sbjct: 52   VLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLH 111

Query: 936  RPELWYLLASLRKKET-TFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAK 760
             P+LW L   +++ E  +  LT  S+S+ +EES   E    V LAR+A SASK+A  +A+
Sbjct: 112  WPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAE 171

Query: 759  DAGISGINVDDSSSTRGLA---SDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPG 589
            +  ++G    D S T  L     +   VRSTR LER++K+R+V KPKV   ET + RK  
Sbjct: 172  NPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKAS 231

Query: 588  SHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCE 409
              +KL   FDPNDPLRLFL GP             LI +IQDL++L+  K++L +QF  E
Sbjct: 232  VKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 291

Query: 408  PTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEG 229
            PT++       +SC+ LKS++H GN SR+KLI AN R+VVH+AKQYQGRG+ L DLLQEG
Sbjct: 292  PTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEG 351

Query: 228  SLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKK 49
            S+GLMKSVEKFKPQAGCRFA+YAYWW+RQ IRKAIFQHSRTIRLPENIY LLS+V EAK+
Sbjct: 352  SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKR 411

Query: 48   TCFQQGNRNPSREDIA 1
               Q+GN +P +ED+A
Sbjct: 412  LYIQEGNHSPDKEDLA 427


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  330 bits (847), Expect = 6e-88
 Identities = 202/412 (49%), Positives = 258/412 (62%), Gaps = 16/412 (3%)
 Frame = -3

Query: 1188 SSSVLLLHEQ---VXXXXXXXXXXXXXXXSVLFQDQR--NDKPLLCLKEDITFQKPLDRQ 1024
            SSSVL+LHE    V               S +  +Q+  N   L  +KE+ T    +DR+
Sbjct: 25   SSSVLMLHEHAAPVLSSVPHAYLGRHVPASAIGPEQQFENRLQLHLVKEEKTSLATIDRR 84

Query: 1023 LAPVSSSH-EGSEDVDPHRHVDDIELQLLRRPELWYLLAS--LRKKETTFPLTAVSISSK 853
            L   +SS  E ++ VD  ++++ +++QLLR P   Y      L+ K    P     + SK
Sbjct: 85   LVDAASSELEENDAVDSEQNINALQVQLLRCPGPSYSFPPYYLKGKGPLSP-NKEPLHSK 143

Query: 852  SEESTGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSSTRGLASDPV------ 691
             ++    E   VV LAR+A  AS++A  +A+D+ +    +DDS+    L+++ V      
Sbjct: 144  GDKLMNFEPHSVVALARKALLASREAALLAEDSKL----LDDSNFPNFLSTNLVDDKLKE 199

Query: 690  --IVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKLDSRFDPNDPLRLFLRGPXX 517
               VRSTR  ERQ+++R  PKP  +  ETN   +P   RK++   D NDPLR+FL GP  
Sbjct: 200  QRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGRPDVRRKVNESIDLNDPLRMFLWGPET 259

Query: 516  XXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIG 337
                       LI+KIQ  MKLQ VK +L  QF+ EPT +EWA A GI+ + LKSQ+  G
Sbjct: 260  KQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEPTSVEWAEAAGITSRELKSQLLSG 319

Query: 336  NISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAY 157
              SR+KLI AN RMVVHIAKQYQGRGLNLQDLLQEGS+GLMKSVEKFKPQAGCRF TYAY
Sbjct: 320  KSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAY 379

Query: 156  WWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
            WWIRQ +RKAIFQHSRTIRLPEN+Y LLSKV +AKK C QQGNR P++EDIA
Sbjct: 380  WWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKECIQQGNRYPTKEDIA 431


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  327 bits (837), Expect = 8e-87
 Identities = 196/414 (47%), Positives = 267/414 (64%), Gaps = 18/414 (4%)
 Frame = -3

Query: 1188 SSSVLLLHEQVXXXXXXXXXXXXXXXS---VLFQDQRND-KPLLCL---KEDITFQKPLD 1030
            SSSVL+ HEQ                    VL Q+QR+D +PL  L   KED  +    D
Sbjct: 29   SSSVLMFHEQAAPAATSIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATD 88

Query: 1029 RQLAPVSSSHEGSEDVDPHRHVDDIELQLLRRPELWYLLASLRKKETTFPLTAV-SISSK 853
            +Q     +S    E+   +      E +LL+ P+L  LL+ L  +E     + + S+++ 
Sbjct: 89   KQQIENGASLN-EENASNNFGQLGFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAAD 147

Query: 852  SEESTGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDS-SSTRGLAS-------- 700
            ++E   +E  ++V LA++A SASK+A  +++D  +   ++DDS S++ G A+        
Sbjct: 148  TKEIVDVEPSNIVALAKKALSASKQAASLSEDLKL---DLDDSLSNSLGSANSCTLPVEK 204

Query: 699  -DPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKLDSRFDPNDPLRLFLRGP 523
             + V VRSTR LERQ+KRRRV +PKV   ET   R+    RKL   FDPNDPLRLFL GP
Sbjct: 205  EEVVTVRSTRRLERQSKRRRV-QPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGP 263

Query: 522  XXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQIH 343
                         L  ++Q+LM+L+ VK++L +QF  EPT++EWA A+G+ C +L++++H
Sbjct: 264  ETKQLLTAKEESELSNQVQNLMRLEKVKSKLQSQFGREPTLVEWAEAIGLRCSALQAELH 323

Query: 342  IGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFATY 163
             GN SR KLIYAN RMVVHIAKQYQ RGL+LQDLLQEGS+GLMKSVE+FKPQ GCRFATY
Sbjct: 324  SGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFATY 383

Query: 162  AYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
            AYWWIRQ IRK+I QHSRT+RLPEN++ LLSKV +AKK+  ++GN  PS+E++A
Sbjct: 384  AYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKVLDAKKSYIREGNHCPSKEELA 437


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum lycopersicum]
          Length = 563

 Score =  325 bits (834), Expect = 2e-86
 Identities = 202/413 (48%), Positives = 257/413 (62%), Gaps = 17/413 (4%)
 Frame = -3

Query: 1188 SSSVLLLHEQ---VXXXXXXXXXXXXXXXSVLFQDQR--NDKPLLCLKEDITFQKPLDRQ 1024
            SSSVL+LHE    V               S +  +Q   N   L  +KE+ T    +DR+
Sbjct: 25   SSSVLMLHEHAAPVLSSVPHTYLGRYVPASAIGPEQHFENRLQLHLVKEEKTSLATIDRR 84

Query: 1023 LAPVSSSH-EGSEDVDPHRHVDDIELQLLRRPELWYLLAS--LRKKETTFPLTAVSISSK 853
            L   +SS  E ++ VD  ++++ +++QLL  P   Y      L+ K    P     + SK
Sbjct: 85   LVEAASSELEENDAVDSEQNINALQVQLLHWPGPSYSFPPYYLKGKGPLSP-NKEPLHSK 143

Query: 852  SEESTGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSSTRGLASDPV------ 691
             ++    E   VV LAR+A  ASK+A  +A+D+ +    +DDS     L++  V      
Sbjct: 144  GDKLMNFEPHSVVALARKALLASKEAALLAEDSKL----LDDSHFPNFLSTHLVDDKLKE 199

Query: 690  --IVRSTRLLERQAKRRRVPKPKVEFLETNHHR-KPGSHRKLDSRFDPNDPLRLFLRGPX 520
               VRSTR +ERQ+++R  PKP  E  ETN+   +P   RK++   D NDPLR+FL GP 
Sbjct: 200  QRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRPDVRRKVNESIDLNDPLRMFLWGPE 259

Query: 519  XXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQIHI 340
                        LI+KIQ  MKLQ VK +L  QF+ EPT LEWA A GI+ + LKSQ+  
Sbjct: 260  TKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAREPTSLEWAEAAGITSRELKSQLLS 319

Query: 339  GNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYA 160
            G  SR+KLI AN RMVVHIAKQYQGRGLNLQDLLQEGS+GLMKSVEKFKPQAGCRF TYA
Sbjct: 320  GKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRFPTYA 379

Query: 159  YWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
            YWWIRQ +RKAIFQHSRTIRLPEN+Y LLSKV +AK+ C +QGNR+P++EDIA
Sbjct: 380  YWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKRECIRQGNRHPTKEDIA 432


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  322 bits (825), Expect = 2e-85
 Identities = 195/402 (48%), Positives = 241/402 (59%), Gaps = 6/402 (1%)
 Frame = -3

Query: 1188 SSSVLLLHEQVXXXXXXXXXXXXXXXS---VLFQDQRND-KPLLCL-KEDITFQKPLDRQ 1024
            +SSVL+L EQ                    VL Q+QR++ +PL  + KED   Q  LDR+
Sbjct: 25   TSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRASQATLDRR 84

Query: 1023 LAPVSSS-HEGSEDVDPHRHVDDIELQLLRRPELWYLLASLRKKETTFPLTAVSISSKSE 847
               + +S HEG +  +  + V++ E QL   P  W L   L   E T             
Sbjct: 85   KTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWNLTDKLIDVEPT------------- 131

Query: 846  ESTGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSSTRGLASDPVIVRSTRLL 667
                    +V+ LA+ A SASK A ++A D      N+  +SS+     +  IVRS R L
Sbjct: 132  --------NVINLAKRALSASKHAAFLA-DNNTDLDNLASTSSSSFSLEEVKIVRSRRHL 182

Query: 666  ERQAKRRRVPKPKVEFLETNHHRKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXX 487
             RQ+  RR PK K    ET   +     ++L   FDPNDPLRLFL GP            
Sbjct: 183  ARQSLNRRAPKTKDLIFETYDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEF 242

Query: 486  XLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYA 307
             LI +IQDLM L+ VK RL +QF  EPT++EWA AVG+SC  LK Q+H GN SR+KLI A
Sbjct: 243  ELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINA 302

Query: 306  NFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKA 127
            N RMVVHIAK+YQ RGL LQDLLQEG++GLMKS+EKFKPQAGCRFATYAYWWIRQ I KA
Sbjct: 303  NLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKA 362

Query: 126  IFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
            IFQHSRTIRLPEN+YGLL KV EAK++  Q+GN  P+ E+IA
Sbjct: 363  IFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIA 404


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  320 bits (819), Expect = 1e-84
 Identities = 190/381 (49%), Positives = 246/381 (64%), Gaps = 12/381 (3%)
 Frame = -3

Query: 1107 VLFQDQRND-KPLLCL-KEDITFQKPLD-RQLAPVSSSHEGSEDVDPHRHVDDIELQLLR 937
            VL Q+QR++ +PLL + KED TFQ  +D +Q+ P +S  EG           D+  QL+ 
Sbjct: 62   VLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGI--------CSDVLDQLIL 113

Query: 936  RPELWYLLASLRKKETTFPLTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKD 757
               L            ++ LT  SI++ ++E   +E  +V+ LAR+A SASK+A  +A+ 
Sbjct: 114  HSNL------------SWSLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLAQK 161

Query: 756  AGISGINVDDSSSTRGLASDPV---------IVRSTRLLERQAKRRRVPKPKVEFLETNH 604
                  N+DD+ ST GL    +          VRSTR LERQ+K RRV K K  F E   
Sbjct: 162  CA----NLDDTVST-GLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPYS 216

Query: 603  HRKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHA 424
             R+ G  +K++  FDP DPLRLFL GP             LI ++QDLM L+ VK +   
Sbjct: 217  SRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKL 276

Query: 423  QFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQD 244
            QF  +PT++EWA AVG+S   ++SQ+H GN SR+KLI AN RMVVHIAKQYQGRGL+LQD
Sbjct: 277  QFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQD 336

Query: 243  LLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKV 64
            LLQEGS+GLMKS+EKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPEN+Y  L KV
Sbjct: 337  LLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKV 396

Query: 63   YEAKKTCFQQGNRNPSREDIA 1
             EAK++   +GN NP++E++A
Sbjct: 397  SEAKRSYIMEGNHNPTKEELA 417


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  317 bits (813), Expect = 5e-84
 Identities = 193/404 (47%), Positives = 251/404 (62%), Gaps = 8/404 (1%)
 Frame = -3

Query: 1188 SSSVLLLHEQVXXXXXXXXXXXXXXXS---VLFQDQRND-KPLLCL-KEDITFQKPLDRQ 1024
            S+SVL+LHEQ                    VL Q+QR++ KPLL + KE+   Q  LDR 
Sbjct: 30   STSVLMLHEQAAPAVTSVPTSFITRHFPTSVLLQEQRDEFKPLLHIFKEEKASQATLDRI 89

Query: 1023 LAPVSSSHEGSEDVDPHRHVDDIELQLLRRPELWYLLASLRKKETTFPLTAVSISSKSEE 844
                +++ E     D ++ V D         +L    + + +   T   +A+  ++ +  
Sbjct: 90   QIENTTAEEDFNIDDFYKLVKDFR-------QLHVTPSQIGENSPTG--SALESNTTANV 140

Query: 843  STGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSSTRGLASDPVIVRSTRLLE 664
               +E   V+TLA+ A SAS +A  +A+ +      +++S+S  GL  +   VRST+LLE
Sbjct: 141  HMDVEPSDVLTLAKHALSASLEAASLAETSKSISAGLNESTSL-GLGWEEETVRSTQLLE 199

Query: 663  RQAKR---RRVPKPKVEFLETNHHRKPGSHRKLDSRFDPNDPLRLFLRGPXXXXXXXXXX 493
            R+ KR   R +   KV   E +        RK     +PNDPLRLFL GP          
Sbjct: 200  RRRKRLKKRNLLNSKVPNYENSSSNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKE 259

Query: 492  XXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQIHIGNISRQKLI 313
               LI ++QD+ KL+ VK+RL +QF  EPT++EWA AVGISCQ L+SQ+  G  SR+KLI
Sbjct: 260  ETELIARVQDVFKLEAVKSRLQSQFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLI 319

Query: 312  YANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQGIR 133
            Y+N RMVVHIAKQYQGRGL LQDLLQEGS+GLMKSVEKFKPQAGCRFATYAYWW+RQ IR
Sbjct: 320  YSNLRMVVHIAKQYQGRGLGLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWVRQTIR 379

Query: 132  KAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
            KAIFQHSRTIRLPEN+Y LL KV EAKK+  Q+GN+NPSRE++A
Sbjct: 380  KAIFQHSRTIRLPENVYTLLGKVLEAKKSYIQEGNQNPSREELA 423


>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Cucumis sativus] gi|449482444|ref|XP_004156283.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic-like [Cucumis sativus]
          Length = 562

 Score =  310 bits (793), Expect = 1e-81
 Identities = 177/357 (49%), Positives = 231/357 (64%), Gaps = 2/357 (0%)
 Frame = -3

Query: 1065 LKEDITFQKPLDRQLAPVSSS-HEGSEDVDPHRHVDDIELQLLRRPELWYLLASLRKKET 889
            LK+D + Q  L+R+L   S    EGS D   H  + +++ Q +  P L      ++ +E 
Sbjct: 76   LKDDRSSQMTLERRLIERSVPIDEGSRDDHDHL-IWELKHQAVEWPGLLSSWPPVQMEEY 134

Query: 888  TFP-LTAVSISSKSEESTGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSSTR 712
                +   S ++  E     E ++V+ LA++A SASK+A  +  +  + G ++D SS   
Sbjct: 135  KISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDETELVGTSLDYSSLDD 194

Query: 711  GLASDPVIVRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKLDSRFDPNDPLRLFL 532
             L+ +   VRSTRL +R++K+R+VPK      E ++ R   S RK   +FDPNDPLRLFL
Sbjct: 195  SLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFL 254

Query: 531  RGPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKS 352
             GP             LI++IQDLM L  VK RL +QF  EPT++EWA A+GI+CQ L+S
Sbjct: 255  WGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQS 314

Query: 351  QIHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRF 172
            Q+H+   SR+KLI AN RMVVHIAKQYQGRGL+L DLLQ GSLGLMKSVEKFKPQAGCRF
Sbjct: 315  QLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRF 374

Query: 171  ATYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
             +YAYWWIR  I KAIFQHSRTIRLPEN+Y LL KV EAK    + GN  PS+E++A
Sbjct: 375  GSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELA 431


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  305 bits (782), Expect = 2e-80
 Identities = 192/416 (46%), Positives = 247/416 (59%), Gaps = 20/416 (4%)
 Frame = -3

Query: 1188 SSSVLLLHEQVXXXXXXXXXXXXXXXS---VLFQDQRND-KPLLCL-KEDITFQKPLDRQ 1024
            +SSVL+LHEQ                    VL  +QR++ +PLL + KED T Q  L  +
Sbjct: 31   TSSVLMLHEQASPTVASWSSNFSAQNFPASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTR 90

Query: 1023 LAPVSSSHEGSEDVDPHRHVDDIELQLLRRPELWYLLASLRKKETTFPLTAVSISSKSEE 844
                 + HE +   +  + V D    L   P L YLL S +  E     T   +S   E 
Sbjct: 91   QMDTVTVHEENNTENADQVVLDFRKHLHHWPNLQYLLTSSQIGEVAASSTLEHVSVDLER 150

Query: 843  STGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSSTRGLAS----DPVI---- 688
                   + V+LA++A S SK+   + +D  +  I  DD S   GLAS    DP I    
Sbjct: 151  RPNGVQFNGVSLAKKALSTSKQESSVVED--LKSIKADDDSIPFGLASTSLADPSIGRNK 208

Query: 687  -VRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKL------DSRFDPNDPLRLFLR 529
             VRSTRLLER++K+R+VPK KV   ET   RK  +  KL      +   D +DPLRLFL 
Sbjct: 209  TVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLW 268

Query: 528  GPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQ 349
            GP             LI +IQDL++L+ VKT L +QF  EPT+ EWA   G++C+ L+SQ
Sbjct: 269  GPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQ 328

Query: 348  IHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFA 169
            +H GN SR+KLI AN RMVVH+AK YQGRGL+LQDLLQEGS+GLMKSVEKF P AG RF 
Sbjct: 329  LHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFG 388

Query: 168  TYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
             YA+WWIRQ IRKA+F+HSRTIRLPE ++ LL KV EAKK   Q+GN +P++E++A
Sbjct: 389  NYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELA 444


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
            max]
          Length = 574

 Score =  304 bits (778), Expect = 6e-80
 Identities = 191/416 (45%), Positives = 248/416 (59%), Gaps = 20/416 (4%)
 Frame = -3

Query: 1188 SSSVLLLHEQVXXXXXXXXXXXXXXXS---VLFQDQRND-KPLLCL-KEDITFQKPLDRQ 1024
            S+SVL+L EQ                    VL Q+QR++ +PLL + KED T Q  L  +
Sbjct: 30   STSVLMLREQASPTVASWSSNFSAQNFPASVLLQEQRDEYRPLLHMSKEDKTSQAMLSTR 89

Query: 1023 LAPVSSSHEGSEDVDPHRHVDDIELQLLRRPELWYLLASLRKKETTFPLTAVSISSKSEE 844
                   HE +   +  + V D    L   P L  LLAS +  E +   T   +SS  + 
Sbjct: 90   QMDTVMVHEENNTENADQVVLDFRKHLHYWPHLQNLLASSQTGEISASSTLQQVSSDLDR 149

Query: 843  STGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSSTRGLAS----DPVI---- 688
             T     + V+LA++A S SK+   + +D  +  I  DD S   GLAS    DP I    
Sbjct: 150  HTNGVQCNRVSLAKKALSTSKQGSSVVED--LKSIKADDDSIPFGLASTGLADPSIGRNK 207

Query: 687  -VRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSHRKL------DSRFDPNDPLRLFLR 529
             VRSTRLLER++K+R+VPK KV   ET   RK  +H KL      +   D NDPL  FLR
Sbjct: 208  TVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAHEKLRVEKKKNEELDQNDPLCFFLR 267

Query: 528  GPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQ 349
            GP             LI +IQDL++L+ VKT+L +QF  EPT+ EWA  VG++C+ L +Q
Sbjct: 268  GPETKQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQ 327

Query: 348  IHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFA 169
            +  G+ SR+KLI AN RMVVH+AK YQGRGL+LQDLLQEGS+GLMKSVEKF P  G RF 
Sbjct: 328  LRSGSRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGSRFG 387

Query: 168  TYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
             YA+WWIRQ IRKA+F+HSRTIRLPE ++ LL KV EAKK   Q+GN +P++E++A
Sbjct: 388  NYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELA 443


>ref|XP_007144359.1| hypothetical protein PHAVU_007G149600g [Phaseolus vulgaris]
            gi|561017549|gb|ESW16353.1| hypothetical protein
            PHAVU_007G149600g [Phaseolus vulgaris]
          Length = 582

 Score =  302 bits (774), Expect = 2e-79
 Identities = 190/416 (45%), Positives = 249/416 (59%), Gaps = 20/416 (4%)
 Frame = -3

Query: 1188 SSSVLLLHEQVXXXXXXXXXXXXXXXS---VLFQDQRND-KPLLCL-KEDITFQKPLDRQ 1024
            S+SVL+L EQ                    VL Q+QR++ +PLL + KED T Q  L+ +
Sbjct: 38   STSVLMLREQASSTVASWSSNFSAQNFPASVLLQEQRDEYRPLLHMSKEDKTSQAILNTR 97

Query: 1023 LAPVSSSHEGSEDVDPHRHVDDIELQLLRRPELWYLLASLRKKETTFPLTAVSISSKSEE 844
               + + HE +   +  + V D    L   P L  LL S +  E     T   +S  SE 
Sbjct: 98   QMDMDTVHEENNTGNADQIVLDFRKHLHLWPRLQNLLNSSQTGEIAASSTLQHVSVDSER 157

Query: 843  STGLEADHVVTLAREAFSASKKAMWIAKDAGISGINVDDSSSTRGLAS----DPVI---- 688
             T     + V+LA++A S +K+   + +  G+  I  DD S   GLAS    DP +    
Sbjct: 158  RTDGVQCNGVSLAKKALSTAKQTSSVVE--GLKSIKADDDSIPFGLASTGLADPSVGRNK 215

Query: 687  -VRSTRLLERQAKRRRVPKPKVEFLETNHHRKPGSH------RKLDSRFDPNDPLRLFLR 529
             VRSTRLLER+AK+R+V K  V+  ET   RK  +       +K++  FD ND LR+FLR
Sbjct: 216  TVRSTRLLERRAKQRKVSKSIVKDDETYLTRKDDAQERIRKEKKINEEFDQNDTLRMFLR 275

Query: 528  GPXXXXXXXXXXXXXLIMKIQDLMKLQVVKTRLHAQFSCEPTILEWAAAVGISCQSLKSQ 349
            GP             LI KIQDL+KL+ +KTRL +QF  EPT+ EWA   G++C+ L SQ
Sbjct: 276  GPETKQLLTLEQESELISKIQDLLKLEELKTRLQSQFGREPTMAEWAEGAGLNCRMLHSQ 335

Query: 348  IHIGNISRQKLIYANFRMVVHIAKQYQGRGLNLQDLLQEGSLGLMKSVEKFKPQAGCRFA 169
            +  GN SR+KLI AN RMVVH+AK YQGRGL+LQDLLQEGS+GLMKSVEKF P AG RF 
Sbjct: 336  LRHGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFG 395

Query: 168  TYAYWWIRQGIRKAIFQHSRTIRLPENIYGLLSKVYEAKKTCFQQGNRNPSREDIA 1
             YA+WWIRQ IRKA+F+HSRTIRLPE +Y  L K+ EAKK   Q+GN +P++E++A
Sbjct: 396  NYAFWWIRQAIRKAVFRHSRTIRLPEKVYIQLGKIMEAKKLYIQEGNLHPTKEELA 451