BLASTX nr result
ID: Mentha22_contig00053743
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha22_contig00053743
(387 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADX99126.1| RNA polymerase beta II subunit [Duranta serratifo... 73 4e-11
ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) ... 68 2e-09
gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Orig... 68 2e-09
ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) ... 68 2e-09
gb|ADX99128.1| RNA polymerase beta II subunit [Petrea volubilis] 68 2e-09
gb|ADX99125.1| RNA polymerase beta II subunit [Stachytarpheta ca... 68 2e-09
gb|ADX99124.1| RNA polymerase beta II subunit [Bouchea fluminensis] 68 2e-09
gb|ADX99116.1| RNA polymerase beta II subunit [Rhaphithamnus ven... 68 2e-09
gb|ADD31149.1| RNA polymerase beta'' subunit protein [Antirrhinu... 68 2e-09
gb|ABV65779.1| RNA polymerase beta'' subunit, partial (chloropla... 67 2e-09
gb|AHI87517.1| RNA polymerase beta subunit (chloroplast) [Chiono... 67 3e-09
gb|AEZ49489.1| RNA polymerase beta'' subunit, partial [Neoasteli... 66 4e-09
gb|AEI27569.1| RNA polymerase beta subunit [Sanguisorba sitchensis] 66 4e-09
ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum in... 66 6e-09
ref|YP_005296090.1| rpoC2 gene product (chloroplast) [Pentactina... 66 6e-09
ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygro... 66 6e-09
ref|YP_009002248.1| RNA polymerase beta'' subunit (chloroplast) ... 65 8e-09
ref|YP_007889851.1| RNA polymerase beta' subunit [Francoa sonchi... 65 8e-09
gb|ADX99115.1| RNA polymerase beta II subunit [Diostea juncea] 65 8e-09
gb|ADX99114.1| RNA polymerase beta II subunit [Lampayo castellani] 65 8e-09
>gb|ADX99126.1| RNA polymerase beta II subunit [Duranta serratifolia]
Length = 678
Score = 73.2 bits (178), Expect = 4e-11
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QNSKESKKW +WIYVQWI PSKK+Y +LVRPVVT EI GIT
Sbjct: 91 QNSKESKKWKNWIYVQWITPSKKKYFVLVRPVVTYEITDGIT 132
>ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) [Lindenbergia
philippensis] gi|557136853|emb|CDI43908.1| RNA
polymerase beta'' subunit (chloroplast) [Lindenbergia
philippensis]
Length = 1368
Score = 67.8 bits (164), Expect = 2e-09
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QNSKESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GIT
Sbjct: 749 QNSKESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGIT 790
>gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Origanum vulgare
subsp. vulgare]
Length = 1397
Score = 67.8 bits (164), Expect = 2e-09
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QNSKESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GIT
Sbjct: 751 QNSKESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGIT 792
>ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
gi|438687594|emb|CCP47120.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688278|emb|CCP47209.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688402|emb|CCP47298.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
Length = 1395
Score = 67.8 bits (164), Expect = 2e-09
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QNSKESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GIT
Sbjct: 753 QNSKESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGIT 794
>gb|ADX99128.1| RNA polymerase beta II subunit [Petrea volubilis]
Length = 682
Score = 67.8 bits (164), Expect = 2e-09
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QNSKESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GIT
Sbjct: 98 QNSKESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGIT 139
>gb|ADX99125.1| RNA polymerase beta II subunit [Stachytarpheta cayennensis]
Length = 683
Score = 67.8 bits (164), Expect = 2e-09
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QNSKESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GIT
Sbjct: 101 QNSKESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGIT 142
>gb|ADX99124.1| RNA polymerase beta II subunit [Bouchea fluminensis]
Length = 688
Score = 67.8 bits (164), Expect = 2e-09
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QNSKESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GIT
Sbjct: 101 QNSKESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGIT 142
>gb|ADX99116.1| RNA polymerase beta II subunit [Rhaphithamnus venustus]
Length = 697
Score = 67.8 bits (164), Expect = 2e-09
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QNSKESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GIT
Sbjct: 114 QNSKESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGIT 155
>gb|ADD31149.1| RNA polymerase beta'' subunit protein [Antirrhinum majus]
Length = 1361
Score = 67.8 bits (164), Expect = 2e-09
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QNSKESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GIT
Sbjct: 737 QNSKESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGIT 778
>gb|ABV65779.1| RNA polymerase beta'' subunit, partial (chloroplast) [Stylobasium
spathulatum]
Length = 1266
Score = 67.4 bits (163), Expect = 2e-09
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGI 381
+NSKESKKW +WIYVQWI P+KK+Y +LVRPV+ EIA GI
Sbjct: 720 KNSKESKKWKNWIYVQWITPTKKKYFVLVRPVIIYEIADGI 760
>gb|AHI87517.1| RNA polymerase beta subunit (chloroplast) [Chionographis japonica]
Length = 1382
Score = 66.6 bits (161), Expect = 3e-09
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGI 381
+NSKESKKW +WIYVQ IIP+KK+Y +LVRPVVT EIA GI
Sbjct: 744 KNSKESKKWKNWIYVQRIIPTKKKYFVLVRPVVTYEIADGI 784
>gb|AEZ49489.1| RNA polymerase beta'' subunit, partial [Neoastelia spectabilis]
Length = 1385
Score = 66.2 bits (160), Expect = 4e-09
Identities = 31/43 (72%), Positives = 35/43 (81%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGITF 387
QNSKESKKW +WIYVQ I P+KK+Y + VRPVVT EIA GI F
Sbjct: 749 QNSKESKKWKNWIYVQRITPTKKKYFVSVRPVVTYEIADGINF 791
>gb|AEI27569.1| RNA polymerase beta subunit [Sanguisorba sitchensis]
Length = 1244
Score = 66.2 bits (160), Expect = 4e-09
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = +1
Query: 262 NSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGI 381
NSKESKKW +WIYVQWI P KK+Y +LVRPV+ EIA GI
Sbjct: 700 NSKESKKWKNWIYVQWITPIKKKYFVLVRPVIIYEIAEGI 739
>ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum indicum]
gi|378747302|gb|AEO92696.2| RNA polymerase beta''
subunit (chloroplast) [Sesamum indicum]
gi|496538591|gb|AGL45326.1| RpoC2 (chloroplast) [Sesamum
indicum]
Length = 1390
Score = 65.9 bits (159), Expect = 6e-09
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QN KESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GIT
Sbjct: 751 QNCKESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGIT 792
>ref|YP_005296090.1| rpoC2 gene product (chloroplast) [Pentactina rupicola]
gi|371532613|gb|AEX31723.1| RNA polymerase beta'
subunit-2 (chloroplast) [Pentactina rupicola]
Length = 1372
Score = 65.9 bits (159), Expect = 6e-09
Identities = 28/41 (68%), Positives = 34/41 (82%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGI 381
+NSKESKKW +WIY QWI P+KK+Y +LVRPV+ EIA GI
Sbjct: 750 KNSKESKKWKNWIYAQWITPTKKKYFVLVRPVIIYEIADGI 790
>ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygrometrica]
gi|340549397|gb|AEK53219.1| RNA polymerase beta''
subunit (chloroplast) [Boea hygrometrica]
Length = 1381
Score = 65.9 bits (159), Expect = 6e-09
Identities = 31/41 (75%), Positives = 34/41 (82%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGI 381
QNSKESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GI
Sbjct: 753 QNSKESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGI 793
>ref|YP_009002248.1| RNA polymerase beta'' subunit (chloroplast) [Pinguicula ehlersiae]
gi|575882130|emb|CDL78804.1| RNA polymerase beta''
subunit (chloroplast) [Pinguicula ehlersiae]
Length = 1387
Score = 65.5 bits (158), Expect = 8e-09
Identities = 34/61 (55%), Positives = 41/61 (67%)
Frame = +1
Query: 202 NNLLITPRIGWCKK*LEVLQNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGI 381
+ +LITP G QN+KESKKW +WIYVQ I PSKK+Y +L RPVVT EI G+
Sbjct: 740 SGVLITPATG--------KQNAKESKKWKNWIYVQRITPSKKKYFVLFRPVVTYEIKEGM 791
Query: 382 T 384
T
Sbjct: 792 T 792
>ref|YP_007889851.1| RNA polymerase beta' subunit [Francoa sonchifolia]
gi|386268355|gb|AFJ00461.1| RNA polymerase beta' subunit
[Francoa sonchifolia]
Length = 1401
Score = 65.5 bits (158), Expect = 8e-09
Identities = 34/60 (56%), Positives = 41/60 (68%)
Frame = +1
Query: 202 NNLLITPRIGWCKK*LEVLQNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGI 381
+ +LI PR G NSKESKKW +W+YVQ I P+KK+Y +LVRPVVT EIA GI
Sbjct: 744 SGILIPPRTG--------KTNSKESKKWKNWLYVQRITPTKKKYFVLVRPVVTYEIADGI 795
>gb|ADX99115.1| RNA polymerase beta II subunit [Diostea juncea]
Length = 699
Score = 65.5 bits (158), Expect = 8e-09
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QNS ESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GIT
Sbjct: 112 QNSTESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGIT 153
>gb|ADX99114.1| RNA polymerase beta II subunit [Lampayo castellani]
Length = 701
Score = 65.5 bits (158), Expect = 8e-09
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = +1
Query: 259 QNSKESKKWYDWIYVQWIIPSKKRYLLLVRPVVTNEIAAGIT 384
QNS ESKKW +WIYVQ I PSKK+Y +LVRPVVT EI GIT
Sbjct: 114 QNSTESKKWKNWIYVQRITPSKKKYFVLVRPVVTYEITDGIT 155