BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha22_contig00042370
         (988 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002519387.1| putative enzymatic polyprotein [Rudbeckia fl...    73   2e-10
gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus]     71   6e-10
gb|ABW81763.1| reverse transcriptase [Dahlia mosaic virus-Holland]     71   6e-10
emb|CAD56758.1| putative reverse transcriptase [Dahlia mosaic vi...    71   6e-10
ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic prote...    70   1e-09
ref|YP_006732334.1| polyprotein [Dahlia mosaic virus] gi|3235119...    69   4e-09
ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus] g...    66   2e-08
ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57...    65   4e-08
gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus]        64   1e-07
dbj|BAO53407.1| reverse transcriptase [Cauliflower mosaic virus]       63   2e-07
dbj|BAO53372.1| reverse transcriptase [Cauliflower mosaic virus]       62   3e-07
dbj|BAO53365.1| reverse transcriptase [Cauliflower mosaic virus]       62   3e-07
dbj|BAO53379.1| reverse transcriptase [Cauliflower mosaic virus]...    62   4e-07
emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus]     62   4e-07
dbj|BAO53421.1| reverse transcriptase [Cauliflower mosaic virus]       62   5e-07
sp|Q00962.1|POL_CAMVN RecName: Full=Enzymatic polyprotein; Inclu...    61   6e-07
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu...    61   6e-07
dbj|BAO53393.1| reverse transcriptase [Cauliflower mosaic virus]...    61   8e-07
dbj|BAO53386.1| reverse transcriptase [Cauliflower mosaic virus]       61   8e-07
ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus...    61   8e-07

>ref|YP_002519387.1| putative enzymatic polyprotein [Rudbeckia flower distortion virus]
           gi|219815610|gb|ACL36982.1| putative enzymatic
           polyprotein [Rudbeckia flower distortion virus]
          Length = 701

 Score = 72.8 bits (177), Expect = 2e-10
 Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 13/222 (5%)
 Frame = -2

Query: 657 TSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIEVEEDLPR----IAGRDF 490
           T+P+S Y+ +G  +  YK  +  AY+D+GA  CTA   I P E+ E+LP+        D 
Sbjct: 23  TNPYSTYVTVGFYFNGYKGFHLHAYVDTGATSCTASPHIIPTELWEELPKPILVNIANDT 82

Query: 489 SKKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDN 310
           + +I  +T+ +K+      G   T       P +Y  +TG D + G NFL++++ + QD 
Sbjct: 83  NIEIRYVTRNLKVSMTDTNGNKHT----FIIPTVYQQNTGMDFIFGQNFLKLYRPFTQDL 138

Query: 309 EKQRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGD------EGQLRHPKMQDRRRFN 148
            +  L        KI  +  K A    +  + + KRG+         +   K++D  R  
Sbjct: 139 YEIYLT-PKLLKFKIQQRAFKQASPGFLDSIRKQKRGEIISKHATNPINITKLEDNLRIV 197

Query: 147 EALL---NYRIRGELIDSEFENNEAEIQILKVSLIYKDIEND 31
           E +L   N +   E+ DS+  + +++   +     +  I ND
Sbjct: 198 ETILEDSNSKTLSEVSDSKTLSEDSDDYFVYSIQRHNTIVND 239


>gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus]
          Length = 673

 Score = 71.2 bits (173), Expect = 6e-10
 Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
 Frame = -2

Query: 657 TSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIEVEEDLPR-IAGRDFSKK 481
           TSP SIYI   + ++ YK      Y+D+GAG+C A K I P E+ E+ P  I     +++
Sbjct: 28  TSPNSIYIEGKLSFKGYKMINIHCYVDTGAGLCLASKYIIPEELWENSPNTIQVTVANQE 87

Query: 480 ILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEKQ 301
            + LTK  K + I I G       K   P IY  +TG DIL+GNNF +++  ++Q   + 
Sbjct: 88  KVYLTKVCKNLNIYIAGE------KFTIPTIYQQETGIDILIGNNFCRLYNPFIQ--WED 139

Query: 300 RLVF-TTQCDHKIIVQRIKGAFNR 232
           R+ F   Q   +I+V + + A  R
Sbjct: 140 RIAFHLEQGTKQILVPKQRKAIKR 163


>gb|ABW81763.1| reverse transcriptase [Dahlia mosaic virus-Holland]
          Length = 673

 Score = 71.2 bits (173), Expect = 6e-10
 Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
 Frame = -2

Query: 657 TSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIEVEEDLPR-IAGRDFSKK 481
           TSP SIYI   + ++ YK      Y+D+GAG+C A K I P E+ E+ P  I     +++
Sbjct: 28  TSPNSIYIEGKLSFKGYKMINIHCYVDTGAGLCLASKYIIPEELWENSPNTIQVTVANQE 87

Query: 480 ILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEKQ 301
            + LTK  K + I I G       K   P IY  +TG DIL+GNNF +++  ++Q   + 
Sbjct: 88  KVYLTKVCKNLNIYIAGE------KFTIPTIYQQETGIDILIGNNFCRLYNPFIQ--WED 139

Query: 300 RLVF-TTQCDHKIIVQRIKGAFNR 232
           R+ F   Q   +I+V + + A  R
Sbjct: 140 RIAFHLEQGTKQILVPKQRKAIKR 163


>emb|CAD56758.1| putative reverse transcriptase [Dahlia mosaic virus]
          Length = 337

 Score = 71.2 bits (173), Expect = 6e-10
 Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
 Frame = -2

Query: 657 TSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIEVEEDLPR-IAGRDFSKK 481
           TSP SIYI   + ++ YK      Y+D+GAG+C A K I P E+ E+ P  I     +++
Sbjct: 28  TSPNSIYIEGKLSFKGYKMINIHCYVDTGAGLCLASKYIIPEELWENSPNTIQVTVANQE 87

Query: 480 ILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEKQ 301
            + LTK  K + I I G       K   P IY  +TG DIL+GNNF +++  ++Q   + 
Sbjct: 88  KVYLTKVCKNLNIYIAGE------KFTIPTIYQQETGIDILIGNNFCRLYNPFIQ--WED 139

Query: 300 RLVF-TTQCDHKIIVQRIKGAFNR 232
           R+ F   Q   +I+V + + A  R
Sbjct: 140 RIAFHLEQGTKQILVPKQRKAIKR 163


>ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
           Reverse transcriptase] [Figwort mosaic virus]
           gi|130600|sp|P09523.1|POL_FMVD RecName: Full=Enzymatic
           polyprotein; Includes: RecName: Full=Aspartic protease;
           Includes: RecName: Full=Endonuclease; Includes: RecName:
           Full=Reverse transcriptase gi|58813|emb|CAA29527.1|
           unnamed protein product [Figwort mosaic virus]
          Length = 666

 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 42/156 (26%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIEVEEDLPR-IAGRDFSK 484
           +T+P SIYI   + +E YK+     Y+D+GA +C A + I P E+ E+ P+ I  +  ++
Sbjct: 27  VTNPNSIYIEGKLSFEGYKSFNIHCYVDTGASLCIASRYIIPEELWENSPKDIQVKIANQ 86

Query: 483 KILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEK 304
           +++ +TK  K +++   G         + P +Y  +TG D L+GNNF +++  ++Q   +
Sbjct: 87  ELIKITKVCKNLKVKFAGK------SFEIPTVYQQETGIDFLIGNNFCRLYNPFIQ--WE 138

Query: 303 QRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGD 196
            R+ F  + +  ++++++  AF+   P    + + D
Sbjct: 139 DRIAFHLK-NEMVLIKKVTKAFSVSNPSFLENMKKD 173


>ref|YP_006732334.1| polyprotein [Dahlia mosaic virus] gi|32351193|gb|AAP75615.1|
           polyprotein [Dahlia mosaic virus]
           gi|404435874|gb|AFR69283.1| polyprotein [Dahlia mosaic
           virus]
          Length = 609

 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 1/187 (0%)
 Frame = -2

Query: 657 TSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIEVEEDLPR-IAGRDFSKK 481
           TSP SIYI   + ++ YK      Y+D+GAG+C A K + P E+ E+ PR I     +++
Sbjct: 50  TSPNSIYIKAKLSFKGYKKFDLHCYVDTGAGLCLASKHVIPDELWENAPRTIEVTVANQE 109

Query: 480 ILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEKQ 301
            + + K  K + + I G       +   P IY  +TG DILLGNNF Q++  ++Q     
Sbjct: 110 KVQINKVCKNLILQIVGE------EFVIPTIYQQETGIDILLGNNFCQLYNPFIQ--WVD 161

Query: 300 RLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGDEGQLRHPKMQDRRRFNEALLNYRIR 121
           R+ F    +  I+V +++ A           ++G EG L   K  +R   ++      I 
Sbjct: 162 RIAFHKN-EEIILVPKVRKAM----------RKGYEGFL---KTMERDSKSQPTPGTNIT 207

Query: 120 GELIDSE 100
            E+ID E
Sbjct: 208 QEVIDEE 214


>ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus]
           gi|21427196|gb|AAM53128.1| ORFV [Mirabilis mosaic virus]
          Length = 674

 Score = 65.9 bits (159), Expect = 2e-08
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
 Frame = -2

Query: 672 NIDLMTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIEVEEDLPR-IAGR 496
           N+   T+P SIYI   V ++ Y+      Y+D+GA +C A K + P +  E+ PR I  +
Sbjct: 19  NLANKTNPNSIYIEAKVKFKGYQTLSLHCYVDTGASLCLASKHVIPDDFWENAPRSIPVK 78

Query: 495 DFSKKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQ 316
             ++  + L K  + ++I I G       +   P IY  +TG DILLGNNF Q ++ ++Q
Sbjct: 79  IANQSSITLNKVCRGLKINIAG------NEFFIPTIYQQETGIDILLGNNFCQTYQPFIQ 132


>ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57790326|gb|AAW56089.1|
           polyprotein [Horseradish latent virus]
          Length = 679

 Score = 65.1 bits (157), Expect = 4e-08
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIEVEEDLPR-IAGRDFSK 484
           +T+P SIYI   + +  YK      ++D+GA +C A K + P E  E  PR I  +  ++
Sbjct: 26  ITNPNSIYIRGRLYFSGYKIVELDCFVDTGASLCIASKHVIPEERWEAAPRKINVKIANE 85

Query: 483 KILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNEK 304
             + L K  + ++I+I G       +     ++  ++G D ++GNNF Q +  ++Q    
Sbjct: 86  STITLDKICRNLDIIIAGE------RFHIDVVFQQESGIDFIIGNNFCQEYSPFIQFT-- 137

Query: 303 QRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRS-KRGDEGQLRHP---------KMQDRRR 154
             +VFT +  +++ + +++ AF R +P    S K+    Q   P          +   RR
Sbjct: 138 GHIVFTMKDQYQVPITKLRRAFKRGIPGFLESMKKRSTAQQPEPLNISTNKTVSLSRGRR 197

Query: 153 FNEAL 139
           F E L
Sbjct: 198 FGEKL 202


>gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 679

 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 50/200 (25%), Positives = 96/200 (48%), Gaps = 2/200 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 18  VTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-IMVKIAD 76

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         K P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 77  GSSITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 130

Query: 306 KQRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGDEGQLRHPKMQDRRRFNEALLNYR 127
             R++FT    + + + ++  A           + G EG L   K + + +  E +    
Sbjct: 131 --RVIFTKNKSYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV---- 174

Query: 126 IRGELIDSEFENNEAEIQIL 67
               +  ++ EN + EI IL
Sbjct: 175 ---NISTNKIENPKEEIAIL 191


>dbj|BAO53407.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 679

 Score = 62.8 bits (151), Expect = 2e-07
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 2/200 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 18  VTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-IMVKIAD 76

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         K P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 77  GSSITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 130

Query: 306 KQRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGDEGQLRHPKMQDRRRFNEALLNYR 127
             R++FT    + + + +I  A           + G EG L   K + + +  E +    
Sbjct: 131 --RVIFTKNKSYPVHIAKITRAV----------RVGTEGFLESMKKRSKTQQPEPV---- 174

Query: 126 IRGELIDSEFENNEAEIQIL 67
               +  ++ EN   EI IL
Sbjct: 175 ---NISTNKIENPLEEIAIL 191


>dbj|BAO53372.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 679

 Score = 62.4 bits (150), Expect = 3e-07
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 2/200 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 18  VTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-IMVKIAD 76

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         K P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 77  GSSITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 130

Query: 306 KQRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGDEGQLRHPKMQDRRRFNEALLNYR 127
             R++FT    + + + ++  A           + G EG L   K + + +  E +    
Sbjct: 131 --RVIFTKNKSYPVHIAKLTRAM----------RVGTEGFLESMKKRSKTQQPEPV---- 174

Query: 126 IRGELIDSEFENNEAEIQIL 67
               +  ++ EN   EI IL
Sbjct: 175 ---NISTNKIENPLEEIAIL 191


>dbj|BAO53365.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 679

 Score = 62.4 bits (150), Expect = 3e-07
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 2/200 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 18  ITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-IMVKIAD 76

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         K P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 77  GSSITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 130

Query: 306 KQRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGDEGQLRHPKMQDRRRFNEALLNYR 127
             R++FT    + + + ++  A           + G EG L   K + + +  E +    
Sbjct: 131 --RVIFTKNKSYPVHIAKLTRAM----------RVGTEGFLESMKKRSKTQQPEPV---- 174

Query: 126 IRGELIDSEFENNEAEIQIL 67
               +  ++ EN   EI IL
Sbjct: 175 ---NISTNKIENPLEEIAIL 191


>dbj|BAO53379.1| reverse transcriptase [Cauliflower mosaic virus]
           gi|591288602|dbj|BAO53414.1| reverse transcriptase
           [Cauliflower mosaic virus]
          Length = 679

 Score = 62.0 bits (149), Expect = 4e-07
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 2/200 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 18  VTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-IMVKIAD 76

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         K P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 77  GSSITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 130

Query: 306 KQRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGDEGQLRHPKMQDRRRFNEALLNYR 127
             R++FT    + + + ++  A           + G EG L   K + + +  E +    
Sbjct: 131 --RVIFTKNKSYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV---- 174

Query: 126 IRGELIDSEFENNEAEIQIL 67
               +  ++ EN   EI IL
Sbjct: 175 ---NISTNKIENPLEEIAIL 191


>emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus]
          Length = 680

 Score = 62.0 bits (149), Expect = 4e-07
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 2/200 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 19  VTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-ILVKIAD 77

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         K P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 78  GSSITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 131

Query: 306 KQRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGDEGQLRHPKMQDRRRFNEALLNYR 127
             R++FT    + + + ++  A           + G EG L   K + + +  E +    
Sbjct: 132 --RVIFTKNKSYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV---- 175

Query: 126 IRGELIDSEFENNEAEIQIL 67
               +  ++ EN   EI IL
Sbjct: 176 ---NISTNKIENPLEEIAIL 192


>dbj|BAO53421.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 679

 Score = 61.6 bits (148), Expect = 5e-07
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 2/200 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 18  VTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-IMVKIAD 76

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         K P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 77  GSSITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 130

Query: 306 KQRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGDEGQLRHPKMQDRRRFNEALLNYR 127
             R++FT    + + + ++  A           + G EG L   K + + +  E +    
Sbjct: 131 --RVIFTKNKSYPVHIAKLTRAV----------RVGTEGFLEAMKKRSKTQQPEPV---- 174

Query: 126 IRGELIDSEFENNEAEIQIL 67
               +  ++ EN   EI IL
Sbjct: 175 ---NISTNKIENPLEEIAIL 191


>sp|Q00962.1|POL_CAMVN RecName: Full=Enzymatic polyprotein; Includes: RecName:
           Full=Aspartic protease; Includes: RecName:
           Full=Endonuclease; Includes: RecName: Full=Reverse
           transcriptase gi|331571|gb|AAA46358.1| reverse
           transcriptase [Cauliflower mosaic virus]
           gi|445598|prf||1909346E reverse transcriptase
          Length = 680

 Score = 61.2 bits (147), Expect = 6e-07
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 2/200 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 19  VTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-IMVKIAD 77

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         K P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 78  GSSITISKVCKDIDLIIVGV------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 131

Query: 306 KQRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGDEGQLRHPKMQDRRRFNEALLNYR 127
             R++FT    + + + ++  A           + G EG L   K + + +  E +    
Sbjct: 132 --RVIFTKNKSYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV---- 175

Query: 126 IRGELIDSEFENNEAEIQIL 67
               +  ++ EN   EI IL
Sbjct: 176 ---NISTNKIENPLEEIAIL 192


>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName:
           Full=Aspartic protease; Includes: RecName:
           Full=Endonuclease; Includes: RecName: Full=Reverse
           transcriptase
          Length = 679

 Score = 61.2 bits (147), Expect = 6e-07
 Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 2/142 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 18  VTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-IMVKIAD 76

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         K P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 77  GSSITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 130

Query: 306 KQRLVFTTQCDHKIIVQRIKGA 241
             R++FT    + + + ++  A
Sbjct: 131 --RVIFTKNKSYPVHITKLTRA 150


>dbj|BAO53393.1| reverse transcriptase [Cauliflower mosaic virus]
           gi|591288586|dbj|BAO53400.1| reverse transcriptase
           [Cauliflower mosaic virus]
          Length = 678

 Score = 60.8 bits (146), Expect = 8e-07
 Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 2/142 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 18  VTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-ILVKIAD 76

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         K P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 77  GSSITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 130

Query: 306 KQRLVFTTQCDHKIIVQRIKGA 241
             R++FT    + + + ++  A
Sbjct: 131 --RVIFTKNKTYPVHIAKLTKA 150


>dbj|BAO53386.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 678

 Score = 60.8 bits (146), Expect = 8e-07
 Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 2/142 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 18  VTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-IMVKIAD 76

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         K P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 77  GSSITISKVCKDIDLIIAGE------IFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 130

Query: 306 KQRLVFTTQCDHKIIVQRIKGA 241
             R++FT    + + + ++  A
Sbjct: 131 --RVIFTKNKTYPVHIAKLTKA 150


>ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus]
           gi|130592|sp|P03554.1|POL_CAMVS RecName: Full=Enzymatic
           polyprotein; Includes: RecName: Full=Aspartic protease;
           Includes: RecName: Full=Endonuclease; Includes: RecName:
           Full=Reverse transcriptase gi|58826|emb|CAA23460.1|
           unnamed protein product [Cauliflower mosaic virus]
          Length = 679

 Score = 60.8 bits (146), Expect = 8e-07
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 2/200 (1%)
 Frame = -2

Query: 660 MTSPFSIYIPIGVLYEKYKA*YFSAYIDSGAGICTARKGIFPIE--VEEDLPRIAGRDFS 487
           +T+P SIYI   + ++ YK      ++D+GA +C A K + P E  V  + P I  +   
Sbjct: 18  VTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP-IMVKIAD 76

Query: 486 KKILILTKGVKMVEILIGGAGQTPWYKVKTPPIYFHDTGADILLGNNFLQMFKRYMQDNE 307
              + ++K  K ++++I G         + P +Y  ++G D ++GNNF Q+++ ++Q  +
Sbjct: 77  GSSITISKVCKDIDLIIAGE------IFRIPTVYQQESGIDFIIGNNFCQLYEPFIQFTD 130

Query: 306 KQRLVFTTQCDHKIIVQRIKGAFNRQMPLVFRSKRGDEGQLRHPKMQDRRRFNEALLNYR 127
             R++FT    + + + ++  A           + G EG L   K + + +  E +    
Sbjct: 131 --RVIFTKNKSYPVHIAKLTRAV----------RVGTEGFLESMKKRSKTQQPEPV---- 174

Query: 126 IRGELIDSEFENNEAEIQIL 67
               +  ++ EN   EI IL
Sbjct: 175 ---NISTNKIENPLEEIAIL 191