BLASTX nr result

ID: Mentha22_contig00018312 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha22_contig00018312
         (682 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002302212.1| PHD finger family protein [Populus trichocar...    57   7e-06

>ref|XP_002302212.1| PHD finger family protein [Populus trichocarpa]
           gi|222843938|gb|EEE81485.1| PHD finger family protein
           [Populus trichocarpa]
          Length = 604

 Score = 56.6 bits (135), Expect = 7e-06
 Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 28/163 (17%)
 Frame = +1

Query: 277 AKANGVAVDTEAGPSGSGSDSLLTYKRRRNAK-------------------------VSN 381
           A  NG   D     SGS S+   TYKRRRN +                         + N
Sbjct: 24  AMDNGFGNDGVEASSGS-SEGFRTYKRRRNTRSSLDGKGQQDGKSFMEAASRLADQTIKN 82

Query: 382 DSVSHSSEKKGA-DYSYDCSLKHKRDIILNQICQSL--DSGGLKKCIRSALVSPAGSGSE 552
           DS  H  E   + ++S D S +  R  +L+ + QS   D  G+++CIR AL+      + 
Sbjct: 83  DSQDHLRENHASLNHSSDVSQRQWRKFVLDYMYQSSSNDEHGIQRCIRDALMMAVKIYAA 142

Query: 553 TTTKESGHSYKDWSKSTFQTEILLDGVQNATESHVGLKTSGSV 681
               ESG+   DW KS      + +G  +  + HVG+ ++G++
Sbjct: 143 IKLNESGNCNADWHKSPSMGR-MANGTHSTAKGHVGVISNGTL 184


Top