BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha22_contig00010606
         (567 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus...   306   2e-81
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   270   3e-70
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   262   4e-68
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   262   5e-68
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   262   5e-68
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   253   3e-65
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   251   9e-65
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   249   3e-64
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   248   8e-64
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   248   8e-64
gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis]     248   1e-63
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   247   1e-63
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   245   7e-63
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   241   1e-61
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   239   3e-61
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      239   4e-61
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha...   238   6e-61
gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]               238   6e-61
ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phas...   236   3e-60
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps...   236   4e-60

>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
          Length = 478

 Score =  306 bits (785), Expect = 2e-81
 Identities = 150/189 (79%), Positives = 170/189 (89%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           LIQAG +GVLQGAERFDQ+RGYKFSTYVQYW+RKSMSTLVA+H+RG+RIP TLSK +NQV
Sbjct: 268 LIQAGNIGVLQGAERFDQSRGYKFSTYVQYWIRKSMSTLVAKHARGVRIPCTLSKVINQV 327

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDF-NTKYMEII 359
           HKARKAL  SNG YPDD EIAKFTGLSVAK++SASKCLRVVGSIDQKIG++  TKYMEI+
Sbjct: 328 HKARKALTTSNGKYPDDYEIAKFTGLSVAKVMSASKCLRVVGSIDQKIGEYMTTKYMEIL 387

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
            DTS  +PEE V RQHM+ DV TLL+GL+ RE++VIILRFGLGNCQCKSLEEIG+ F VS
Sbjct: 388 SDTSMPSPEEAVIRQHMLNDVSTLLNGLEPREKQVIILRFGLGNCQCKSLEEIGRLFRVS 447

Query: 540 KEWIRRIER 566
           KEWIR+IER
Sbjct: 448 KEWIRKIER 456


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  270 bits (689), Expect = 3e-70
 Identities = 132/189 (69%), Positives = 162/189 (85%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           L+QAG +GVL+GAERFD TRGY+FSTYVQYW+RKSMS +V+R +RGI+IP TLS+A+ Q+
Sbjct: 351 LLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQI 410

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359
            KARKAL  SNG YPDD EIAK+TGLS+AKI SAS+CLRVVGSIDQKIG+  N KY+E +
Sbjct: 411 QKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFL 470

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
           PDTS  +PEEVV RQHM++D++ LL  LDSRER+V+ILRFGL + Q KSLEEIG+ F VS
Sbjct: 471 PDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVS 530

Query: 540 KEWIRRIER 566
           KEW+RR+E+
Sbjct: 531 KEWVRRLEK 539


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  262 bits (670), Expect = 4e-68
 Identities = 128/188 (68%), Positives = 159/188 (84%), Gaps = 1/188 (0%)
 Frame = +3

Query: 3    LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
            LIQAG +GVLQGAERFD TRGY+FSTYVQ+W+RKS+S +VARH+RGI++P TLS+A+ Q+
Sbjct: 639  LIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLSRAIVQI 698

Query: 183  HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359
             KARKAL +S+G YPD+  IAKFTGLS+AKI SA+KC+RVVGSIDQKIGD  N KY+E I
Sbjct: 699  QKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEFI 758

Query: 360  PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
            PD S  +PE+ V RQHM +D++ LL+GLD+RER+V++LR+GL     KSLEEIG+ F VS
Sbjct: 759  PDLSVRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVS 818

Query: 540  KEWIRRIE 563
            KEWIRRIE
Sbjct: 819  KEWIRRIE 826


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  262 bits (669), Expect = 5e-68
 Identities = 125/189 (66%), Positives = 160/189 (84%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           L+QAG VGVLQGAERFD TRGYKFSTYVQYW+RKS+S +VARH+RGI+IP  L++ ++++
Sbjct: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKI 384

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359
            KARKAL  S+G YP+D EIAK+TGLS+A+I SAS+CLR+VGSIDQKIGD  N KY+E  
Sbjct: 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFA 444

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
           PD S  +P+E+V RQHM KDV+ +L+ LDSRER+V++LR+GL + + KSLEEIGK F VS
Sbjct: 445 PDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVS 504

Query: 540 KEWIRRIER 566
           KEWIR++E+
Sbjct: 505 KEWIRKLEK 513


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553989|gb|ESR64003.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  262 bits (669), Expect = 5e-68
 Identities = 125/189 (66%), Positives = 160/189 (84%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           L+QAG VGVLQGAERFD TRGYKFSTYVQYW+RKS+S +VARH+RGI+IP  L++ ++++
Sbjct: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKI 384

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359
            KARKAL  S+G YP+D EIAK+TGLS+A+I SAS+CLR+VGSIDQKIGD  N KY+E  
Sbjct: 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFA 444

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
           PD S  +P+E+V RQHM KDV+ +L+ LDSRER+V++LR+GL + + KSLEEIGK F VS
Sbjct: 445 PDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVS 504

Query: 540 KEWIRRIER 566
           KEWIR++E+
Sbjct: 505 KEWIRKLEK 513


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           lycopersicum]
          Length = 551

 Score =  253 bits (645), Expect = 3e-65
 Identities = 125/189 (66%), Positives = 151/189 (79%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           LIQAG +GVLQGA RFD TRGYKFSTYVQYW+RKS+S LVA+H+RG+RIP T+ K +NQ+
Sbjct: 343 LIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQI 402

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359
           HKARK L RS+G +P D EIAKFTGLS A+I  ASKCLRVVGSIDQK+GD  N K +E+ 
Sbjct: 403 HKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELT 462

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
           PD S  +PEE V RQ ++ ++Y LL+ LD +E++VI  RFGL   Q KSLEEIG+ + VS
Sbjct: 463 PDKSVTSPEEFVMRQDIVDNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVS 522

Query: 540 KEWIRRIER 566
           KEWIRRIER
Sbjct: 523 KEWIRRIER 531


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           tuberosum]
          Length = 555

 Score =  251 bits (641), Expect = 9e-65
 Identities = 124/189 (65%), Positives = 152/189 (80%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           LIQAG +GVLQGA RFD TRGYKFSTYVQYW+RKS+S LVA+H+RG+RIP T+ K +NQ+
Sbjct: 347 LIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQI 406

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359
           HKARK L RS+G +P D EIAKFTGLS A+I  ASKCLRVVGSIDQK+GD  + K +E+ 
Sbjct: 407 HKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELT 466

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
           PD S  +PEE V RQ ++ ++Y+LL+ LD +E++VI  RFGL   Q KSLEEIG+ + VS
Sbjct: 467 PDKSITSPEETVMRQDIVDNMYSLLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVS 526

Query: 540 KEWIRRIER 566
           KEWIRRIER
Sbjct: 527 KEWIRRIER 535


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
           subsp. vesca]
          Length = 545

 Score =  249 bits (637), Expect = 3e-64
 Identities = 123/189 (65%), Positives = 154/189 (81%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           L+QAG +G+LQGAERFD +RGY+FSTYVQYW+RKSMS LVA+H+RGI+IP+TLSKA+N++
Sbjct: 335 LLQAGNLGLLQGAERFDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRI 394

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDFNT-KYMEII 359
            KARKA   S+  YPDD EIAK TGLS+AKI SAS+CLRVVGS+D KI + +   YME  
Sbjct: 395 QKARKANYNSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFT 454

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
           PD +  TPEE V RQHM  D++ LL+GL+SRE++V+ LR+GL  C  KSLEEIG+ F VS
Sbjct: 455 PDIAVETPEESVMRQHMKNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVS 514

Query: 540 KEWIRRIER 566
           KEWIR+IE+
Sbjct: 515 KEWIRKIEK 523


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  248 bits (633), Expect = 8e-64
 Identities = 120/189 (63%), Positives = 152/189 (80%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           ++QAG +GVLQGAERFD T+GY+FSTYVQYW+RKSMSTLVARH+RG++IP TL++A+ Q+
Sbjct: 352 ILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQI 411

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359
            KARKAL +S+G YPDD EIAKFTGLS+AKI SA  CLRVVGS DQ   D +    +E  
Sbjct: 412 QKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFT 471

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
           PDTS  +PEE   +Q   KD++ LL GLD RER++++LR+G G  Q KSLEEIG+RF+VS
Sbjct: 472 PDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVS 531

Query: 540 KEWIRRIER 566
           KEWIR++E+
Sbjct: 532 KEWIRKLEK 540


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  248 bits (633), Expect = 8e-64
 Identities = 120/189 (63%), Positives = 152/189 (80%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           ++QAG +GVLQGAERFD T+GY+FSTYVQYW+RKSMSTLVARH+RG++IP TL++A+ Q+
Sbjct: 402 ILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQI 461

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359
            KARKAL +S+G YPDD EIAKFTGLS+AKI SA  CLRVVGS DQ   D +    +E  
Sbjct: 462 QKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFT 521

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
           PDTS  +PEE   +Q   KD++ LL GLD RER++++LR+G G  Q KSLEEIG+RF+VS
Sbjct: 522 PDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVS 581

Query: 540 KEWIRRIER 566
           KEWIR++E+
Sbjct: 582 KEWIRKLEK 590


>gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 476

 Score =  248 bits (632), Expect = 1e-63
 Identities = 125/182 (68%), Positives = 144/182 (79%), Gaps = 1/182 (0%)
 Frame = +3

Query: 24  GVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKAL 203
           GVLQGAERFD TRGY+FSTYVQYW+RKSMS LVARH+RGI +P TLSKA+NQ+ K RKA+
Sbjct: 275 GVLQGAERFDHTRGYRFSTYVQYWIRKSMSQLVARHARGILVPGTLSKAINQIQKTRKAI 334

Query: 204 RRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTAT 380
             S    PDD EIAK TGLS+ KI SA  CLRVVGSID KIGD F+ K ME + D S  T
Sbjct: 335 SNSQRKPPDDNEIAKLTGLSLDKIRSAGNCLRVVGSIDHKIGDCFSGKNMEFMADMSIKT 394

Query: 381 PEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRI 560
           PEE V RQHM  D++ LL+ LD RER+V++LR+GL NCQ KSLEEIGK F VSKEWIR+I
Sbjct: 395 PEETVMRQHMKSDIHNLLETLDPRERQVLVLRYGLINCQPKSLEEIGKLFKVSKEWIRKI 454

Query: 561 ER 566
           E+
Sbjct: 455 EK 456


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
           gi|462419859|gb|EMJ24122.1| hypothetical protein
           PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  247 bits (631), Expect = 1e-63
 Identities = 123/189 (65%), Positives = 153/189 (80%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           L+QAG +G+LQGAERFD +RGY+FSTYVQYW+RKSMS LVA+H+RG++IP TLSKA+NQ+
Sbjct: 346 LMQAGNLGLLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQI 405

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDFNT-KYMEII 359
            KARKA   S+  YPDD EIAK TGLS+A+I SAS CLRVVGS+D K+ + +   YME  
Sbjct: 406 QKARKANYNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFT 465

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
           PDTS  +PEE V RQHM KD++ LL GL+ RER+V++LR+GL N   KSLEEIG+ F VS
Sbjct: 466 PDTSLKSPEETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVS 525

Query: 540 KEWIRRIER 566
           KEWIR+IE+
Sbjct: 526 KEWIRKIEK 534


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
           gi|222854562|gb|EEE92109.1| hypothetical protein
           POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  245 bits (625), Expect = 7e-63
 Identities = 121/189 (64%), Positives = 152/189 (80%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           LIQAG +G+LQGAERFD TRGY+FSTYVQYW+RKSM  +V RH+RGI+IP  LS+++N++
Sbjct: 350 LIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKI 409

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDFN-TKYMEII 359
            KARKAL  S+G YPDD E+AKFTGLS+AKI SA KCLRVV S+DQKIG+ +  KY E I
Sbjct: 410 QKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFI 469

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
           PD S   PEE V RQHM +++Y LL GLDSRE++V++LR+G  + Q KSL EIG+ F VS
Sbjct: 470 PDMSIQNPEEAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVS 529

Query: 540 KEWIRRIER 566
           KE +R+IE+
Sbjct: 530 KERVRKIEK 538


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  241 bits (614), Expect = 1e-61
 Identities = 119/190 (62%), Positives = 154/190 (81%), Gaps = 2/190 (1%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           LIQAG VGVLQGAERFD TRGYKFSTYVQYW+RKSMST+V+RH+RG+ IPS++ + +N +
Sbjct: 361 LIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHI 420

Query: 183 HKARKALRRSNG-TYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEI 356
            KARK L+ S+G  Y  D EIAK TG SV KI +A++CL+VVGSID+K+GD F TK++E 
Sbjct: 421 QKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEF 480

Query: 357 IPDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSV 536
            PDT+  +PEE V RQ   +D++ LL+GL+ RE++V++LR+GL + + KSLEEIGK F V
Sbjct: 481 TPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKV 540

Query: 537 SKEWIRRIER 566
           SKEWIR+IER
Sbjct: 541 SKEWIRKIER 550


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323785|gb|EFH54206.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  239 bits (611), Expect = 3e-61
 Identities = 117/190 (61%), Positives = 155/190 (81%), Gaps = 2/190 (1%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           LIQAG VGVLQGAERFD TRGYKFSTYVQYW+RKSMS +V+RH+RG+ IPS++ + +NQ+
Sbjct: 358 LIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRTINQI 417

Query: 183 HKARKALRRSNG-TYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEI 356
            KARK L+ S+G  YP D +I+K T LSV KI +A++CL+VVGSI++K+GD F+TK++E 
Sbjct: 418 QKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGSIEKKVGDCFSTKFLEF 477

Query: 357 IPDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSV 536
            PDT+  +PEE V RQ   +D++ LL+GL+ RE++V++LR+GL N + KSLEEIGK   V
Sbjct: 478 TPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQNYRPKSLEEIGKLLRV 537

Query: 537 SKEWIRRIER 566
           SKEWIR+IER
Sbjct: 538 SKEWIRKIER 547


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  239 bits (610), Expect = 4e-61
 Identities = 115/189 (60%), Positives = 147/189 (77%), Gaps = 1/189 (0%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           L+QAG +G+LQGAERFD TRGY+FSTYVQYW+RK+MS LV+RH RGI++P+TLS  +N+V
Sbjct: 340 LMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTTLSTTINRV 399

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDF-NTKYMEII 359
            KARK L+RS G +PDD E++K TGLS+ KI SA  CLR+VGS+DQK+G F N KY+E  
Sbjct: 400 QKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHFINMKYLECT 459

Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539
           PDT+   PE+ V +QHM  DV+ LL  LD +ER V+I R+GL    C SL E+GK F VS
Sbjct: 460 PDTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGLEG-HCMSLHEVGKVFDVS 518

Query: 540 KEWIRRIER 566
           KEWIR++E+
Sbjct: 519 KEWIRKMEK 527


>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
           gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
           polymerase sigma factor sigC; Short=Sigma factor C;
           Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
           sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
           Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
           [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
           [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
           factor SigC [Arabidopsis thaliana]
           gi|7630012|emb|CAB88354.1| sigma factor SigC
           [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1|
           At3g53920 [Arabidopsis thaliana]
           gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit
           C [Arabidopsis thaliana]
          Length = 571

 Score =  238 bits (608), Expect = 6e-61
 Identities = 118/190 (62%), Positives = 153/190 (80%), Gaps = 2/190 (1%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           LIQAG VGVLQGAERFD TRGYKFSTYVQYW+RKSMST+V+RH+RG+ IPS++ + +N +
Sbjct: 361 LIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHI 420

Query: 183 HKARKALRRSNG-TYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEI 356
            KARK L+ S+G  Y  D EIAK TG SV KI +A++CL+VVGSID+K+GD F TK++E 
Sbjct: 421 QKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEF 480

Query: 357 IPDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSV 536
            PDT+  +PEE V RQ   +D++ LL+GL+ RE++V++LR+GL + + KSLEEIGK   V
Sbjct: 481 TPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKV 540

Query: 537 SKEWIRRIER 566
           SKEWIR+IER
Sbjct: 541 SKEWIRKIER 550


>gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
          Length = 291

 Score =  238 bits (608), Expect = 6e-61
 Identities = 118/190 (62%), Positives = 153/190 (80%), Gaps = 2/190 (1%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           LIQAG VGVLQGAERFD TRGYKFSTYVQYW+RKSMST+V+RH+RG+ IPS++ + +N +
Sbjct: 81  LIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHI 140

Query: 183 HKARKALRRSNG-TYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEI 356
            KARK L+ S+G  Y  D EIAK TG SV KI +A++CL+VVGSID+K+GD F TK++E 
Sbjct: 141 QKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEF 200

Query: 357 IPDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSV 536
            PDT+  +PEE V RQ   +D++ LL+GL+ RE++V++LR+GL + + KSLEEIGK   V
Sbjct: 201 TPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKV 260

Query: 537 SKEWIRRIER 566
           SKEWIR+IER
Sbjct: 261 SKEWIRKIER 270


>ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phaseolus vulgaris]
           gi|561034783|gb|ESW33313.1| hypothetical protein
           PHAVU_001G059800g [Phaseolus vulgaris]
          Length = 538

 Score =  236 bits (602), Expect = 3e-60
 Identities = 116/188 (61%), Positives = 151/188 (80%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           L+QAG VGVLQGAERFD TRGYKFSTYVQYW+RKS+  +V R+SRG+ IP +L++A+ Q+
Sbjct: 330 LLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVERYSRGVIIPWSLNRAIKQI 389

Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDFNTKYMEIIP 362
            KARK L+ ++   PDDCEIAK TGLS+ KI SAS CLR+V SIDQK+G+F+ +Y E++P
Sbjct: 390 QKARKVLKSTHKKSPDDCEIAKMTGLSLDKIKSASNCLRIVASIDQKVGNFSIEYNELLP 449

Query: 363 DTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSK 542
           DT+  +PE  V +QHM KDV+ LL GL+SRER+++ LRFGL + Q KSL++IG  F VSK
Sbjct: 450 DTTIESPENGVLKQHMKKDVHDLLKGLNSRERQILSLRFGLIDNQPKSLQDIGTLFKVSK 509

Query: 543 EWIRRIER 566
           E IR+IE+
Sbjct: 510 ERIRKIEK 517


>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
           gi|482559522|gb|EOA23713.1| hypothetical protein
           CARUB_v10016920mg [Capsella rubella]
          Length = 581

 Score =  236 bits (601), Expect = 4e-60
 Identities = 117/190 (61%), Positives = 152/190 (80%), Gaps = 2/190 (1%)
 Frame = +3

Query: 3   LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182
           LIQAG VGVLQGAERFD  RGYKFSTYVQYW+RKSMS +V+RH+RG+ IPS++ + +NQ+
Sbjct: 371 LIQAGFVGVLQGAERFDHARGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRTINQI 430

Query: 183 HKARKALRRSNG-TYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEI 356
            KARK L+ S+G  YP D EI+K T LSV KI +A++CL+VVGSI+ K+GD F+TK++E 
Sbjct: 431 QKARKTLKTSHGIKYPADEEISKLTSLSVKKIRAANQCLKVVGSIENKVGDCFSTKFLEF 490

Query: 357 IPDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSV 536
            PDT   +PEE V RQ   +D++ LL+GL+ RE++V++LR+GL + + KSLEEIGK   V
Sbjct: 491 TPDTMMESPEEAVMRQSARRDLHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLRV 550

Query: 537 SKEWIRRIER 566
           SKEWIRRIER
Sbjct: 551 SKEWIRRIER 560