BLASTX nr result
ID: Mentha22_contig00010606
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Mentha22_contig00010606 (567 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus... 306 2e-81 ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 270 3e-70 ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The... 262 4e-68 ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-... 262 5e-68 ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr... 262 5e-68 ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-... 253 3e-65 ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-... 251 9e-65 ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-... 249 3e-64 ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 248 8e-64 emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 248 8e-64 gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis] 248 1e-63 ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun... 247 1e-63 ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu... 245 7e-63 dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 241 1e-61 ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp.... 239 3e-61 emb|CAD20832.1| sigma factor [Spinacia oleracea] 239 4e-61 ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha... 238 6e-61 gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana] 238 6e-61 ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phas... 236 3e-60 ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps... 236 4e-60 >gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus] Length = 478 Score = 306 bits (785), Expect = 2e-81 Identities = 150/189 (79%), Positives = 170/189 (89%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 LIQAG +GVLQGAERFDQ+RGYKFSTYVQYW+RKSMSTLVA+H+RG+RIP TLSK +NQV Sbjct: 268 LIQAGNIGVLQGAERFDQSRGYKFSTYVQYWIRKSMSTLVAKHARGVRIPCTLSKVINQV 327 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDF-NTKYMEII 359 HKARKAL SNG YPDD EIAKFTGLSVAK++SASKCLRVVGSIDQKIG++ TKYMEI+ Sbjct: 328 HKARKALTTSNGKYPDDYEIAKFTGLSVAKVMSASKCLRVVGSIDQKIGEYMTTKYMEIL 387 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 DTS +PEE V RQHM+ DV TLL+GL+ RE++VIILRFGLGNCQCKSLEEIG+ F VS Sbjct: 388 SDTSMPSPEEAVIRQHMLNDVSTLLNGLEPREKQVIILRFGLGNCQCKSLEEIGRLFRVS 447 Query: 540 KEWIRRIER 566 KEWIR+IER Sbjct: 448 KEWIRKIER 456 >ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] Length = 560 Score = 270 bits (689), Expect = 3e-70 Identities = 132/189 (69%), Positives = 162/189 (85%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 L+QAG +GVL+GAERFD TRGY+FSTYVQYW+RKSMS +V+R +RGI+IP TLS+A+ Q+ Sbjct: 351 LLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQI 410 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359 KARKAL SNG YPDD EIAK+TGLS+AKI SAS+CLRVVGSIDQKIG+ N KY+E + Sbjct: 411 QKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFL 470 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PDTS +PEEVV RQHM++D++ LL LDSRER+V+ILRFGL + Q KSLEEIG+ F VS Sbjct: 471 PDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVS 530 Query: 540 KEWIRRIER 566 KEW+RR+E+ Sbjct: 531 KEWVRRLEK 539 >ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao] gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao] Length = 848 Score = 262 bits (670), Expect = 4e-68 Identities = 128/188 (68%), Positives = 159/188 (84%), Gaps = 1/188 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 LIQAG +GVLQGAERFD TRGY+FSTYVQ+W+RKS+S +VARH+RGI++P TLS+A+ Q+ Sbjct: 639 LIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLSRAIVQI 698 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359 KARKAL +S+G YPD+ IAKFTGLS+AKI SA+KC+RVVGSIDQKIGD N KY+E I Sbjct: 699 QKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEFI 758 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PD S +PE+ V RQHM +D++ LL+GLD+RER+V++LR+GL KSLEEIG+ F VS Sbjct: 759 PDLSVRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVS 818 Query: 540 KEWIRRIE 563 KEWIRRIE Sbjct: 819 KEWIRRIE 826 >ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis] Length = 534 Score = 262 bits (669), Expect = 5e-68 Identities = 125/189 (66%), Positives = 160/189 (84%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 L+QAG VGVLQGAERFD TRGYKFSTYVQYW+RKS+S +VARH+RGI+IP L++ ++++ Sbjct: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKI 384 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359 KARKAL S+G YP+D EIAK+TGLS+A+I SAS+CLR+VGSIDQKIGD N KY+E Sbjct: 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFA 444 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PD S +P+E+V RQHM KDV+ +L+ LDSRER+V++LR+GL + + KSLEEIGK F VS Sbjct: 445 PDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVS 504 Query: 540 KEWIRRIER 566 KEWIR++E+ Sbjct: 505 KEWIRKLEK 513 >ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina] gi|557553989|gb|ESR64003.1| hypothetical protein CICLE_v10007968mg [Citrus clementina] Length = 534 Score = 262 bits (669), Expect = 5e-68 Identities = 125/189 (66%), Positives = 160/189 (84%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 L+QAG VGVLQGAERFD TRGYKFSTYVQYW+RKS+S +VARH+RGI+IP L++ ++++ Sbjct: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKI 384 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359 KARKAL S+G YP+D EIAK+TGLS+A+I SAS+CLR+VGSIDQKIGD N KY+E Sbjct: 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFA 444 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PD S +P+E+V RQHM KDV+ +L+ LDSRER+V++LR+GL + + KSLEEIGK F VS Sbjct: 445 PDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVS 504 Query: 540 KEWIRRIER 566 KEWIR++E+ Sbjct: 505 KEWIRKLEK 513 >ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum lycopersicum] Length = 551 Score = 253 bits (645), Expect = 3e-65 Identities = 125/189 (66%), Positives = 151/189 (79%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 LIQAG +GVLQGA RFD TRGYKFSTYVQYW+RKS+S LVA+H+RG+RIP T+ K +NQ+ Sbjct: 343 LIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQI 402 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359 HKARK L RS+G +P D EIAKFTGLS A+I ASKCLRVVGSIDQK+GD N K +E+ Sbjct: 403 HKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELT 462 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PD S +PEE V RQ ++ ++Y LL+ LD +E++VI RFGL Q KSLEEIG+ + VS Sbjct: 463 PDKSVTSPEEFVMRQDIVDNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVS 522 Query: 540 KEWIRRIER 566 KEWIRRIER Sbjct: 523 KEWIRRIER 531 >ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum] Length = 555 Score = 251 bits (641), Expect = 9e-65 Identities = 124/189 (65%), Positives = 152/189 (80%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 LIQAG +GVLQGA RFD TRGYKFSTYVQYW+RKS+S LVA+H+RG+RIP T+ K +NQ+ Sbjct: 347 LIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQI 406 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359 HKARK L RS+G +P D EIAKFTGLS A+I ASKCLRVVGSIDQK+GD + K +E+ Sbjct: 407 HKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELT 466 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PD S +PEE V RQ ++ ++Y+LL+ LD +E++VI RFGL Q KSLEEIG+ + VS Sbjct: 467 PDKSITSPEETVMRQDIVDNMYSLLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVS 526 Query: 540 KEWIRRIER 566 KEWIRRIER Sbjct: 527 KEWIRRIER 535 >ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca subsp. vesca] Length = 545 Score = 249 bits (637), Expect = 3e-64 Identities = 123/189 (65%), Positives = 154/189 (81%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 L+QAG +G+LQGAERFD +RGY+FSTYVQYW+RKSMS LVA+H+RGI+IP+TLSKA+N++ Sbjct: 335 LLQAGNLGLLQGAERFDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRI 394 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDFNT-KYMEII 359 KARKA S+ YPDD EIAK TGLS+AKI SAS+CLRVVGS+D KI + + YME Sbjct: 395 QKARKANYNSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFT 454 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PD + TPEE V RQHM D++ LL+GL+SRE++V+ LR+GL C KSLEEIG+ F VS Sbjct: 455 PDIAVETPEESVMRQHMKNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVS 514 Query: 540 KEWIRRIER 566 KEWIR+IE+ Sbjct: 515 KEWIRKIEK 523 >ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera] gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera] Length = 561 Score = 248 bits (633), Expect = 8e-64 Identities = 120/189 (63%), Positives = 152/189 (80%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 ++QAG +GVLQGAERFD T+GY+FSTYVQYW+RKSMSTLVARH+RG++IP TL++A+ Q+ Sbjct: 352 ILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQI 411 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359 KARKAL +S+G YPDD EIAKFTGLS+AKI SA CLRVVGS DQ D + +E Sbjct: 412 QKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFT 471 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PDTS +PEE +Q KD++ LL GLD RER++++LR+G G Q KSLEEIG+RF+VS Sbjct: 472 PDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVS 531 Query: 540 KEWIRRIER 566 KEWIR++E+ Sbjct: 532 KEWIRKLEK 540 >emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] Length = 611 Score = 248 bits (633), Expect = 8e-64 Identities = 120/189 (63%), Positives = 152/189 (80%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 ++QAG +GVLQGAERFD T+GY+FSTYVQYW+RKSMSTLVARH+RG++IP TL++A+ Q+ Sbjct: 402 ILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQI 461 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEII 359 KARKAL +S+G YPDD EIAKFTGLS+AKI SA CLRVVGS DQ D + +E Sbjct: 462 QKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFT 521 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PDTS +PEE +Q KD++ LL GLD RER++++LR+G G Q KSLEEIG+RF+VS Sbjct: 522 PDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVS 581 Query: 540 KEWIRRIER 566 KEWIR++E+ Sbjct: 582 KEWIRKLEK 590 >gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis] Length = 476 Score = 248 bits (632), Expect = 1e-63 Identities = 125/182 (68%), Positives = 144/182 (79%), Gaps = 1/182 (0%) Frame = +3 Query: 24 GVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQVHKARKAL 203 GVLQGAERFD TRGY+FSTYVQYW+RKSMS LVARH+RGI +P TLSKA+NQ+ K RKA+ Sbjct: 275 GVLQGAERFDHTRGYRFSTYVQYWIRKSMSQLVARHARGILVPGTLSKAINQIQKTRKAI 334 Query: 204 RRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTAT 380 S PDD EIAK TGLS+ KI SA CLRVVGSID KIGD F+ K ME + D S T Sbjct: 335 SNSQRKPPDDNEIAKLTGLSLDKIRSAGNCLRVVGSIDHKIGDCFSGKNMEFMADMSIKT 394 Query: 381 PEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRI 560 PEE V RQHM D++ LL+ LD RER+V++LR+GL NCQ KSLEEIGK F VSKEWIR+I Sbjct: 395 PEETVMRQHMKSDIHNLLETLDPRERQVLVLRYGLINCQPKSLEEIGKLFKVSKEWIRKI 454 Query: 561 ER 566 E+ Sbjct: 455 EK 456 >ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica] gi|462419859|gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica] Length = 555 Score = 247 bits (631), Expect = 1e-63 Identities = 123/189 (65%), Positives = 153/189 (80%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 L+QAG +G+LQGAERFD +RGY+FSTYVQYW+RKSMS LVA+H+RG++IP TLSKA+NQ+ Sbjct: 346 LMQAGNLGLLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQI 405 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDFNT-KYMEII 359 KARKA S+ YPDD EIAK TGLS+A+I SAS CLRVVGS+D K+ + + YME Sbjct: 406 QKARKANYNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFT 465 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PDTS +PEE V RQHM KD++ LL GL+ RER+V++LR+GL N KSLEEIG+ F VS Sbjct: 466 PDTSLKSPEETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVS 525 Query: 540 KEWIRRIER 566 KEWIR+IE+ Sbjct: 526 KEWIRKIEK 534 >ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa] gi|222854562|gb|EEE92109.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa] Length = 559 Score = 245 bits (625), Expect = 7e-63 Identities = 121/189 (64%), Positives = 152/189 (80%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 LIQAG +G+LQGAERFD TRGY+FSTYVQYW+RKSM +V RH+RGI+IP LS+++N++ Sbjct: 350 LIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKI 409 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDFN-TKYMEII 359 KARKAL S+G YPDD E+AKFTGLS+AKI SA KCLRVV S+DQKIG+ + KY E I Sbjct: 410 QKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFI 469 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PD S PEE V RQHM +++Y LL GLDSRE++V++LR+G + Q KSL EIG+ F VS Sbjct: 470 PDMSIQNPEEAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVS 529 Query: 540 KEWIRRIER 566 KE +R+IE+ Sbjct: 530 KERVRKIEK 538 >dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana] Length = 571 Score = 241 bits (614), Expect = 1e-61 Identities = 119/190 (62%), Positives = 154/190 (81%), Gaps = 2/190 (1%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 LIQAG VGVLQGAERFD TRGYKFSTYVQYW+RKSMST+V+RH+RG+ IPS++ + +N + Sbjct: 361 LIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHI 420 Query: 183 HKARKALRRSNG-TYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEI 356 KARK L+ S+G Y D EIAK TG SV KI +A++CL+VVGSID+K+GD F TK++E Sbjct: 421 QKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEF 480 Query: 357 IPDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSV 536 PDT+ +PEE V RQ +D++ LL+GL+ RE++V++LR+GL + + KSLEEIGK F V Sbjct: 481 TPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKV 540 Query: 537 SKEWIRRIER 566 SKEWIR+IER Sbjct: 541 SKEWIRKIER 550 >ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323785|gb|EFH54206.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 568 Score = 239 bits (611), Expect = 3e-61 Identities = 117/190 (61%), Positives = 155/190 (81%), Gaps = 2/190 (1%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 LIQAG VGVLQGAERFD TRGYKFSTYVQYW+RKSMS +V+RH+RG+ IPS++ + +NQ+ Sbjct: 358 LIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRTINQI 417 Query: 183 HKARKALRRSNG-TYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEI 356 KARK L+ S+G YP D +I+K T LSV KI +A++CL+VVGSI++K+GD F+TK++E Sbjct: 418 QKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGSIEKKVGDCFSTKFLEF 477 Query: 357 IPDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSV 536 PDT+ +PEE V RQ +D++ LL+GL+ RE++V++LR+GL N + KSLEEIGK V Sbjct: 478 TPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQNYRPKSLEEIGKLLRV 537 Query: 537 SKEWIRRIER 566 SKEWIR+IER Sbjct: 538 SKEWIRKIER 547 >emb|CAD20832.1| sigma factor [Spinacia oleracea] Length = 548 Score = 239 bits (610), Expect = 4e-61 Identities = 115/189 (60%), Positives = 147/189 (77%), Gaps = 1/189 (0%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 L+QAG +G+LQGAERFD TRGY+FSTYVQYW+RK+MS LV+RH RGI++P+TLS +N+V Sbjct: 340 LMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTTLSTTINRV 399 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDF-NTKYMEII 359 KARK L+RS G +PDD E++K TGLS+ KI SA CLR+VGS+DQK+G F N KY+E Sbjct: 400 QKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHFINMKYLECT 459 Query: 360 PDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVS 539 PDT+ PE+ V +QHM DV+ LL LD +ER V+I R+GL C SL E+GK F VS Sbjct: 460 PDTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGLEG-HCMSLHEVGKVFDVS 518 Query: 540 KEWIRRIER 566 KEWIR++E+ Sbjct: 519 KEWIRKMEK 527 >ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana] gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor C; Short=Sigma-C; AltName: Full=RNA polymerase sigma factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags: Precursor gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana] gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana] gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana] Length = 571 Score = 238 bits (608), Expect = 6e-61 Identities = 118/190 (62%), Positives = 153/190 (80%), Gaps = 2/190 (1%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 LIQAG VGVLQGAERFD TRGYKFSTYVQYW+RKSMST+V+RH+RG+ IPS++ + +N + Sbjct: 361 LIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHI 420 Query: 183 HKARKALRRSNG-TYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEI 356 KARK L+ S+G Y D EIAK TG SV KI +A++CL+VVGSID+K+GD F TK++E Sbjct: 421 QKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEF 480 Query: 357 IPDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSV 536 PDT+ +PEE V RQ +D++ LL+GL+ RE++V++LR+GL + + KSLEEIGK V Sbjct: 481 TPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKV 540 Query: 537 SKEWIRRIER 566 SKEWIR+IER Sbjct: 541 SKEWIRKIER 550 >gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana] Length = 291 Score = 238 bits (608), Expect = 6e-61 Identities = 118/190 (62%), Positives = 153/190 (80%), Gaps = 2/190 (1%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 LIQAG VGVLQGAERFD TRGYKFSTYVQYW+RKSMST+V+RH+RG+ IPS++ + +N + Sbjct: 81 LIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHI 140 Query: 183 HKARKALRRSNG-TYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEI 356 KARK L+ S+G Y D EIAK TG SV KI +A++CL+VVGSID+K+GD F TK++E Sbjct: 141 QKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEF 200 Query: 357 IPDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSV 536 PDT+ +PEE V RQ +D++ LL+GL+ RE++V++LR+GL + + KSLEEIGK V Sbjct: 201 TPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKV 260 Query: 537 SKEWIRRIER 566 SKEWIR+IER Sbjct: 261 SKEWIRKIER 270 >ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phaseolus vulgaris] gi|561034783|gb|ESW33313.1| hypothetical protein PHAVU_001G059800g [Phaseolus vulgaris] Length = 538 Score = 236 bits (602), Expect = 3e-60 Identities = 116/188 (61%), Positives = 151/188 (80%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 L+QAG VGVLQGAERFD TRGYKFSTYVQYW+RKS+ +V R+SRG+ IP +L++A+ Q+ Sbjct: 330 LLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVERYSRGVIIPWSLNRAIKQI 389 Query: 183 HKARKALRRSNGTYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGDFNTKYMEIIP 362 KARK L+ ++ PDDCEIAK TGLS+ KI SAS CLR+V SIDQK+G+F+ +Y E++P Sbjct: 390 QKARKVLKSTHKKSPDDCEIAKMTGLSLDKIKSASNCLRIVASIDQKVGNFSIEYNELLP 449 Query: 363 DTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSK 542 DT+ +PE V +QHM KDV+ LL GL+SRER+++ LRFGL + Q KSL++IG F VSK Sbjct: 450 DTTIESPENGVLKQHMKKDVHDLLKGLNSRERQILSLRFGLIDNQPKSLQDIGTLFKVSK 509 Query: 543 EWIRRIER 566 E IR+IE+ Sbjct: 510 ERIRKIEK 517 >ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella] gi|482559522|gb|EOA23713.1| hypothetical protein CARUB_v10016920mg [Capsella rubella] Length = 581 Score = 236 bits (601), Expect = 4e-60 Identities = 117/190 (61%), Positives = 152/190 (80%), Gaps = 2/190 (1%) Frame = +3 Query: 3 LIQAGKVGVLQGAERFDQTRGYKFSTYVQYWVRKSMSTLVARHSRGIRIPSTLSKAVNQV 182 LIQAG VGVLQGAERFD RGYKFSTYVQYW+RKSMS +V+RH+RG+ IPS++ + +NQ+ Sbjct: 371 LIQAGFVGVLQGAERFDHARGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRTINQI 430 Query: 183 HKARKALRRSNG-TYPDDCEIAKFTGLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEI 356 KARK L+ S+G YP D EI+K T LSV KI +A++CL+VVGSI+ K+GD F+TK++E Sbjct: 431 QKARKTLKTSHGIKYPADEEISKLTSLSVKKIRAANQCLKVVGSIENKVGDCFSTKFLEF 490 Query: 357 IPDTSTATPEEVVFRQHMMKDVYTLLDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSV 536 PDT +PEE V RQ +D++ LL+GL+ RE++V++LR+GL + + KSLEEIGK V Sbjct: 491 TPDTMMESPEEAVMRQSARRDLHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLRV 550 Query: 537 SKEWIRRIER 566 SKEWIRRIER Sbjct: 551 SKEWIRRIER 560