BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha22_contig00005093
         (336 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,...   125   6e-27
emb|CBI24961.3| unnamed protein product [Vitis vinifera]              120   3e-25
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   120   3e-25
ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD,...   114   1e-23
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,...   100   2e-19
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr...   100   2e-19
gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]      95   9e-18
ref|YP_730230.1| type II alternative RNA polymerase sigma factor...    93   4e-17
ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [...    92   7e-17
ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prun...    92   1e-16
ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis...    91   2e-16
ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD,...    89   5e-16
ref|YP_729335.1| type II alternative RNA polymerase sigma factor...    88   1e-15
ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002] gi...    87   2e-15
ref|WP_006170846.1| RNA polymerase sigma factor [Synechococcus s...    87   2e-15
ref|WP_006172875.1| RNA polymerase sigma factor [Synechococcus s...    87   2e-15
ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subun...    87   2e-15
ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece...    86   4e-15
gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]               86   5e-15
ref|WP_007310385.1| RNA polymerase sigma factor [Crocosphaera wa...    86   5e-15

>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Solanum tuberosum]
          Length = 421

 Score =  125 bits (314), Expect = 6e-27
 Identities = 65/136 (47%), Positives = 89/136 (65%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           +EEA++SWYLKE AR+E +R+ ++ ET   ++SS + AKAAG+S  +LDK+L   +ES+K
Sbjct: 127 EEEAKYSWYLKEEARIEILRK-MVEETSEIDLSSKQLAKAAGMSTQRLDKLLINAKESQK 185

Query: 184 RITSC-------------------------XXXXLLRGAIKFDPEKGYKLSTYAYWWIRQ 288
           +I  C                             LL GA KF+P+KGYKLSTYAYWWIRQ
Sbjct: 186 KIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGLLHGAKKFNPKKGYKLSTYAYWWIRQ 245

Query: 289 SITRAIANKSKIIRLP 336
           +I+RA+ANKS++IRLP
Sbjct: 246 AISRAVANKSRVIRLP 261


>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  120 bits (300), Expect = 3e-25
 Identities = 69/136 (50%), Positives = 81/136 (59%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           +EEA F   LKE A +EA RR  IAET   E +SN+WA+A GI R  LDK+L  GRES +
Sbjct: 26  REEAEFCLCLKEEAGLEAARRR-IAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRE 84

Query: 184 RITSC-------------------------XXXXLLRGAIKFDPEKGYKLSTYAYWWIRQ 288
           RI                                LLRGA +FDP++GYKLSTY YWWIRQ
Sbjct: 85  RINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQ 144

Query: 289 SITRAIANKSKIIRLP 336
           +I RAIANKS+IIRLP
Sbjct: 145 AIVRAIANKSRIIRLP 160


>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  120 bits (300), Expect = 3e-25
 Identities = 69/136 (50%), Positives = 81/136 (59%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           +EEA F   LKE A +EA RR  IAET   E +SN+WA+A GI R  LDK+L  GRES +
Sbjct: 133 REEAEFCLCLKEEAGLEAARRR-IAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRE 191

Query: 184 RITSC-------------------------XXXXLLRGAIKFDPEKGYKLSTYAYWWIRQ 288
           RI                                LLRGA +FDP++GYKLSTY YWWIRQ
Sbjct: 192 RINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQ 251

Query: 289 SITRAIANKSKIIRLP 336
           +I RAIANKS+IIRLP
Sbjct: 252 AIVRAIANKSRIIRLP 267


>ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Solanum lycopersicum]
          Length = 442

 Score =  114 bits (286), Expect = 1e-23
 Identities = 66/157 (42%), Positives = 89/157 (56%), Gaps = 46/157 (29%)
 Frame = +1

Query: 4   KEEARFSWYLK---------------------ERARVEAVRRGLIAETEGDEVSSNEWAK 120
           KEEA++SWYLK                     E AR+E +R+ ++ ET   ++SS + AK
Sbjct: 127 KEEAKYSWYLKVNNNVYHRELDAGAESGWVKREEARIEILRK-MVEETSEIDLSSKQLAK 185

Query: 121 AAGISRHKLDKILWKGRESEKRITSC-------------------------XXXXLLRGA 225
           AAG+S  +LDK+L   +ES+K+I  C                             LL GA
Sbjct: 186 AAGMSTRRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGLLHGA 245

Query: 226 IKFDPEKGYKLSTYAYWWIRQSITRAIANKSKIIRLP 336
            KF+P+KGYKLSTYAYWWIRQ+I+RA+ANKS++IRLP
Sbjct: 246 KKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLP 282


>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Citrus sinensis]
          Length = 436

 Score =  100 bits (249), Expect = 2e-19
 Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 25/135 (18%)
 Frame = +1

Query: 7   EEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEKR 186
           EEA   + LKE A++E  R+  +A+ E  E  S + AKA G+ + K+DKIL K RES++R
Sbjct: 144 EEAEICYSLKEGAKLEEARK-TVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQER 202

Query: 187 ITSCXXXX-------------------------LLRGAIKFDPEKGYKLSTYAYWWIRQS 291
           I                                LLRGA +F+PE+GYKLSTY YWWI+Q+
Sbjct: 203 IIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQA 262

Query: 292 ITRAIANKSKIIRLP 336
           I R IANKS+ IRLP
Sbjct: 263 IIRTIANKSRTIRLP 277


>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
           gi|557541154|gb|ESR52198.1| hypothetical protein
           CICLE_v10033747mg [Citrus clementina]
          Length = 436

 Score =  100 bits (249), Expect = 2e-19
 Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 25/135 (18%)
 Frame = +1

Query: 7   EEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEKR 186
           EEA   + LKE A++E  R+  +A+ E  E  S + AKA G+ + K+DKIL K RES++R
Sbjct: 144 EEAEICYSLKEGAKLEEARK-TVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQER 202

Query: 187 ITSCXXXX-------------------------LLRGAIKFDPEKGYKLSTYAYWWIRQS 291
           I                                LLRGA +F+PE+GYKLSTY YWWI+Q+
Sbjct: 203 IIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQA 262

Query: 292 ITRAIANKSKIIRLP 336
           I R IANKS+ IRLP
Sbjct: 263 IIRTIANKSRTIRLP 277


>gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 422

 Score = 95.1 bits (235), Expect = 9e-18
 Identities = 57/136 (41%), Positives = 75/136 (55%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           +EEA     LKE A++EA R  +   +E  E +S E AKA G+    +DK+L   RES++
Sbjct: 126 REEAECCLILKEGAKLEATRLRM-TNSEDHEPTSKELAKAMGMEMRSIDKMLCDKRESQE 184

Query: 184 RITSCXXXX-------------------------LLRGAIKFDPEKGYKLSTYAYWWIRQ 288
           RI+                               LLRGA KFDP++G KLSTY YWWIRQ
Sbjct: 185 RISRSYRRLVVSVAAGYQGKGLSFPDLIQEGSVGLLRGAQKFDPQRGNKLSTYVYWWIRQ 244

Query: 289 SITRAIANKSKIIRLP 336
           +I RAI NKS+++RLP
Sbjct: 245 AIIRAIENKSRVVRLP 260


>ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
           protein [Synechococcus sp. CC9311]
           gi|499938218|ref|WP_011618952.1| RNA polymerase sigma
           factor [Synechococcus sp. CC9311]
           gi|113881638|gb|ABI46596.1| Type II alternative RNA
           polymerase sigma factor, sigma-70 family protein
           [Synechococcus sp. CC9311]
          Length = 318

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           ++E      ++E   +EA+   L  +  G+EV+ +EWAKAAG+S  +L + L  GR +++
Sbjct: 26  QQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMSAAQLKRKLQAGRRAKE 85

Query: 184 RITSC-------------------------XXXXLLRGAIKFDPEKGYKLSTYAYWWIRQ 288
           R+ +                              L+RG  KFDP +GYK STYAYWWIRQ
Sbjct: 86  RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 145

Query: 289 SITRAIANKSKIIRLP 336
            ITRAIA KS+ IRLP
Sbjct: 146 GITRAIAEKSRTIRLP 161


>ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223543041|gb|EEF44576.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 389

 Score = 92.0 bits (227), Expect = 7e-17
 Identities = 56/135 (41%), Positives = 76/135 (56%), Gaps = 25/135 (18%)
 Frame = +1

Query: 7   EEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEKR 186
           EEA F   LK+ ARVEA RR  IAET+  E +S + A+A  + +  +DKIL KGR+S +R
Sbjct: 121 EEAEFCLCLKDHARVEAARRR-IAETQEHEPTSKQLAEALRMRKKNVDKILCKGRQSRER 179

Query: 187 ITSC-------------------------XXXXLLRGAIKFDPEKGYKLSTYAYWWIRQS 291
           IT                               LLRGA +FDP++G KLSTY YWWI+++
Sbjct: 180 ITGNYRRLVLSIANRYRGKGLSLQDLIQEGSIGLLRGAERFDPKRGNKLSTYVYWWIKEA 239

Query: 292 ITRAIANKSKIIRLP 336
           I  +I+  S+I+R P
Sbjct: 240 IITSISINSRIVRQP 254


>ref|XP_007219201.1| hypothetical protein PRUPE_ppa017025mg [Prunus persica]
           gi|462415663|gb|EMJ20400.1| hypothetical protein
           PRUPE_ppa017025mg [Prunus persica]
          Length = 440

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 57/136 (41%), Positives = 74/136 (54%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           +EEA     LKE AR+E+  R  + E +  E +S + AKA G+    +DK+L K RES++
Sbjct: 147 REEAECCLSLKEGARLES-ERFRVVEAQKHEPTSKQLAKAMGMKMRSIDKVLCKRRESQE 205

Query: 184 RITSCXXXX-------------------------LLRGAIKFDPEKGYKLSTYAYWWIRQ 288
           +I                                LLRGA KFD E+ +KLSTY YWWIRQ
Sbjct: 206 KIIRSYRGLVVSVASSYQGKGLSFQDLIQEGSIGLLRGAEKFDHEREWKLSTYVYWWIRQ 265

Query: 289 SITRAIANKSKIIRLP 336
           +I RAI NKS+IIRLP
Sbjct: 266 AIIRAIENKSRIIRLP 281


>ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
           gi|383322044|ref|YP_005382897.1| RNA polymerase sigma
           factor [Synechocystis sp. PCC 6803 substr. GT-I]
           gi|383325213|ref|YP_005386066.1| RNA polymerase sigma
           factor [Synechocystis sp. PCC 6803 substr. PCC-P]
           gi|383491097|ref|YP_005408773.1| RNA polymerase sigma
           factor [Synechocystis sp. PCC 6803 substr. PCC-N]
           gi|384436364|ref|YP_005651088.1| RNA polymerase sigma
           factor [Synechocystis sp. PCC 6803]
           gi|451814461|ref|YP_007450913.1| RNA polymerase sigma
           factor [Synechocystis sp. PCC 6803]
           gi|499174754|ref|WP_010872341.1| RNA polymerase sigma
           factor [Synechocystis sp. PCC 6803]
           gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor
           [Synechocystis sp. PCC 6803]
           gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor
           [Synechocystis sp. PCC 6803]
           gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor
           [Synechocystis sp. PCC 6803 substr. GT-I]
           gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor
           [Synechocystis sp. PCC 6803 substr. PCC-N]
           gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor
           [Synechocystis sp. PCC 6803 substr. PCC-P]
           gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor
           SigD [Bacillus subtilis BEST7613]
           gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor
           [Synechocystis sp. PCC 6803]
          Length = 318

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           +EE  ++  +++   +  +++ L    +G+ VS +EWAKAA +S  +L+K + +G  +++
Sbjct: 26  EEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIRELEKAIKEGERAKR 85

Query: 184 RITSCXXXXLL-------------------------RGAIKFDPEKGYKLSTYAYWWIRQ 288
           ++       ++                         RG  KFDP KGY+ STYAYWWIRQ
Sbjct: 86  KMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQ 145

Query: 289 SITRAIANKSKIIRLP 336
           +ITRAIA KS+ IRLP
Sbjct: 146 AITRAIAEKSRTIRLP 161


>ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Fragaria vesca subsp. vesca]
          Length = 452

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 56/136 (41%), Positives = 71/136 (52%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           +EEA     LKE A++E+  R    E +  E +S + A A  I    +DK++   RES++
Sbjct: 159 REEADCCMSLKEGAKLES-ERTRFTEAQEHEPTSKQLANAMRIKMSSIDKVICNRRESQE 217

Query: 184 RITSCXXXX-------------------------LLRGAIKFDPEKGYKLSTYAYWWIRQ 288
           RI                                LLRGA KFDPE+G KLSTY YWWIRQ
Sbjct: 218 RIIKSYRGLVVSVASSYQGKGLSLQDLIQEGSIGLLRGAEKFDPERGLKLSTYVYWWIRQ 277

Query: 289 SITRAIANKSKIIRLP 336
           +I RAI NKS+IIRLP
Sbjct: 278 AIIRAIENKSRIIRLP 293


>ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
           protein [Synechococcus sp. CC9311]
           gi|499937351|ref|WP_011618085.1| RNA polymerase sigma
           factor [Synechococcus sp. CC9311]
           gi|113881912|gb|ABI46870.1| Type II alternative RNA
           polymerase sigma factor, sigma-70 family protein
           [Synechococcus sp. CC9311]
          Length = 335

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           ++E      ++E   +EA+   L  +  G+EV+  E AKAAG+S  +L + L  GR +++
Sbjct: 43  QQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAGVSAAQLKRKLQAGRRAKE 102

Query: 184 RITSC-------------------------XXXXLLRGAIKFDPEKGYKLSTYAYWWIRQ 288
           R+ +                              L+RG  KFDP +GYK STYAYWWIRQ
Sbjct: 103 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 162

Query: 289 SITRAIANKSKIIRLP 336
            ITRAIA KS+ IRLP
Sbjct: 163 GITRAIAEKSRTIRLP 178


>ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
           gi|501264425|ref|WP_012307443.1| RNA polymerase sigma
           factor [Synechococcus sp. PCC 7002]
           gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus
           sp. PCC 7002]
          Length = 318

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           +EE  +S  +++   +E ++  L AE +  E S  EWA+AA +S+ +L K L  G+++++
Sbjct: 27  EEEVLYSRRVQKMVNLEKLKAEL-AEKQDQEPSLKEWAQAANLSQRELKKQLLLGKQAKQ 85

Query: 184 RITSCXXXXLL-------------------------RGAIKFDPEKGYKLSTYAYWWIRQ 288
           ++       ++                         RG  KFDP KGY+ STYAYWWIRQ
Sbjct: 86  KMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQ 145

Query: 289 SITRAIANKSKIIRLP 336
           +ITRAIA KS+ IRLP
Sbjct: 146 AITRAIAEKSRTIRLP 161


>ref|WP_006170846.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
           gi|87282056|gb|EAQ74018.1| type II alternative RNA
           polymerase sigma factor, sigma-70 family protein
           [Synechococcus sp. WH 5701]
          Length = 330

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 51/136 (37%), Positives = 69/136 (50%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           ++E      ++E  R+E   + L     G + S+ EWA AAG+S   L + L  GR +++
Sbjct: 38  EQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGRRAKE 97

Query: 184 RITSC-------------------------XXXXLLRGAIKFDPEKGYKLSTYAYWWIRQ 288
           R+ +                              L+RG  KFDP +GYK STYAYWWIRQ
Sbjct: 98  RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 157

Query: 289 SITRAIANKSKIIRLP 336
            ITRAIA KS+ IRLP
Sbjct: 158 GITRAIAEKSRTIRLP 173


>ref|WP_006172875.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
           gi|87283894|gb|EAQ75848.1| type II alternative RNA
           polymerase sigma factor, sigma-70 family protein
           [Synechococcus sp. WH 5701]
          Length = 349

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 51/136 (37%), Positives = 69/136 (50%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           ++E      ++E  R+E   + L     G + S+ EWA AAG+S   L + L  GR +++
Sbjct: 54  EQEITLGRQVQELMRLEEAEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGRRAKE 113

Query: 184 RITSC-------------------------XXXXLLRGAIKFDPEKGYKLSTYAYWWIRQ 288
           R+ +                              L+RG  KFDP +GYK STYAYWWIRQ
Sbjct: 114 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 173

Query: 289 SITRAIANKSKIIRLP 336
            ITRAIA KS+ IRLP
Sbjct: 174 GITRAIAEKSRTIRLP 189


>ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
           PCC 7407] gi|504985696|ref|WP_015172798.1| RpoD
           subfamily RNA polymerase sigma-70 subunit [Geitlerinema
           sp. PCC 7407] gi|427986090|gb|AFY67234.1| RNA
           polymerase, sigma 70 subunit, RpoD subfamily
           [Geitlerinema sp. PCC 7407]
          Length = 318

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           ++E  +   ++  + ++++R GL+ E    E +S EWA+AAG+S   L++++ +G  +++
Sbjct: 27  EQEILYGKQVQRLSGLQSIREGLV-ERWDREPTSTEWAEAAGVSEADLEQVIQEGELAKR 85

Query: 184 RITSCXXXXLL-------------------------RGAIKFDPEKGYKLSTYAYWWIRQ 288
           R+       ++                         RG  KFDP KGY+ STYAYWWIRQ
Sbjct: 86  RMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQ 145

Query: 289 SITRAIANKSKIIRLP 336
           +ITRAIA K + IRLP
Sbjct: 146 AITRAIAEKGRTIRLP 161


>ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
           gi|497230982|ref|WP_009545244.1| RNA polymerase sigma
           factor [Cyanothece sp. ATCC 51142]
           gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA
           polymerase sigma factor D [Cyanothece sp. ATCC 51142]
          Length = 318

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           +EE  ++  ++    +E +R  +I ET G E + ++WAKAA +S+ +   I+  G  +++
Sbjct: 27  EEEILYAKRVQRLVNLEKLREEIIEET-GQEPTESQWAKAAKLSKREFRSIVESGEAAKR 85

Query: 184 RITSCXXXXLL-------------------------RGAIKFDPEKGYKLSTYAYWWIRQ 288
           ++       ++                         RG  KFDP KGY+ STYAYWWIRQ
Sbjct: 86  KMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQ 145

Query: 289 SITRAIANKSKIIRLP 336
           +ITRAIA KS+ IRLP
Sbjct: 146 AITRAIAEKSRTIRLP 161


>gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
          Length = 317

 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 49/136 (36%), Positives = 75/136 (55%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           +EE  +S  +++   +E ++  L AE +  E S  EWA+AA +S+ +L K L  G+++++
Sbjct: 27  EEEVLYSRRVQKMVNLEKLKAEL-AEKQDQEPSLKEWAQAANLSQRQLKKQLLLGKQAKQ 85

Query: 184 RITSCXXXXLL-------------------------RGAIKFDPEKGYKLSTYAYWWIRQ 288
           ++       ++                         RG  KFDP KGY+ STYAYWWIRQ
Sbjct: 86  KMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQ 145

Query: 289 SITRAIANKSKIIRLP 336
           +ITRAIA +S+ IRLP
Sbjct: 146 AITRAIAEQSRTIRLP 161


>ref|WP_007310385.1| RNA polymerase sigma factor [Crocosphaera watsonii]
           gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific
           RpoD-like sigma factor, type-2 @ Group 2 RNA polymerase
           sigma factor [Crocosphaera watsonii WH 0003]
           gi|543432596|emb|CCQ59826.1| Cyanobacteria-specific
           RpoD-like sigma factor,type-2 @ Group 2 RNA polymerase
           sigma factor [Crocosphaera watsonii WH 0401]
           gi|543515804|emb|CCQ51041.1| Cyanobacteria-specific
           RpoD-like sigma factor, type-2 @ Group 2 RNA polymerase
           sigma factor [Crocosphaera watsonii WH 8502]
           gi|543524499|emb|CCQ57017.1| Cyanobacteria-specific
           RpoD-like sigma factor,type-2 @ Group 2 RNA polymerase
           sigma factor [Crocosphaera watsonii WH 0005]
           gi|543534813|emb|CCQ68453.1| Cyanobacteria-specific
           RpoD-like sigma factor,type-2 @ Group 2 RNA polymerase
           sigma factor [Crocosphaera watsonii WH 0402]
          Length = 318

 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 25/136 (18%)
 Frame = +1

Query: 4   KEEARFSWYLKERARVEAVRRGLIAETEGDEVSSNEWAKAAGISRHKLDKILWKGRESEK 183
           +EE  ++  ++    +E +R  +I ET G E ++++WAKAA +SR +   ++  G  +++
Sbjct: 27  EEEILYAKRVQRLVNLEKLREEIIQET-GKEPTNSQWAKAAKLSRKEFCSVVEAGEAAKR 85

Query: 184 RITSCXXXXLL-------------------------RGAIKFDPEKGYKLSTYAYWWIRQ 288
           ++       ++                         RG  KFDP KGY+ STYAYWWIRQ
Sbjct: 86  KMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQ 145

Query: 289 SITRAIANKSKIIRLP 336
           +ITRAIA KS+ IRLP
Sbjct: 146 AITRAIAEKSRTIRLP 161