BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum23_contig00044796
         (349 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

OMO64412.1 reverse transcriptase [Corchorus capsularis]                55   2e-06
OMO60226.1 reverse transcriptase [Corchorus capsularis]                54   7e-06

>OMO64412.1 reverse transcriptase [Corchorus capsularis]
          Length = 1793

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 33/106 (31%), Positives = 49/106 (46%)
 Frame = -3

Query: 341  DYSVMVKAPADSDHCAIDVKVFVNFSCGPKPFKYQHFWKKHNFFMNIXXXXXXXXXXVNG 162
            D  V    P  SDHC + ++  V F   PKPFK+ ++W KH  F+ +          V G
Sbjct: 1106 DSMVEFMLPDVSDHCLMFIRTDVKFFSPPKPFKFFNYWTKHAEFLQL--INDVWSGNVTG 1163

Query: 161  NGWDILKSKCKKVKG*FRSLNDEVF*NISSRFLEKHHELIEIQDDI 24
            N    L  K K +K   +  N + F N+  + +EK  E+  +Q  I
Sbjct: 1164 NRMQRLSKKFKSLKSVLKEFNRKHFGNLPQKVVEKKAEIATLQKGI 1209


>OMO60226.1 reverse transcriptase [Corchorus capsularis]
          Length = 888

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 30/98 (30%), Positives = 49/98 (50%)
 Frame = -3

Query: 317 PADSDHCAIDVKVFVNFSCGPKPFKYQHFWKKHNFFMNIXXXXXXXXXXVNGNGWDILKS 138
           P  SDHC +++   V     PKPFK+ +FW KH+ F+ +            GN    L +
Sbjct: 218 PEISDHCLMNIITDVKIFSPPKPFKFFNFWTKHDDFLPLVNRVWQEPVF--GNPMSRLFN 275

Query: 137 KCKKVKG*FRSLNDEVF*NISSRFLEKHHELIEIQDDI 24
           K K +K    + N E F N+  + +EK  E++ +Q ++
Sbjct: 276 KLKNLKPHLTNFNREHFGNLPQKVVEKKAEIVVLQRNL 313