BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum23_contig00044337
         (340 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KYP74079.1 Retrovirus-related Pol polyprotein from transposon TN...    54   4e-06

>KYP74079.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 324

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
 Frame = -2

Query: 339 DSETSKVVGFANSK*GLYVLKLASLVDVFVDKCVSLSTSTHVVVDFSTKVYSSVA-NFWH 163
           D + S+V+G  +    LY+LK  +++         L +S H V   S     S+A N WH
Sbjct: 151 DHQGSRVIGKGDILDSLYILKCPNIMPF----SSILHSSNHNVTTASNNYDRSIAVNKWH 206

Query: 162 YRLGHVSADVMK-KYXXXXXXXXXXXXXXVCYVCPLAKQQRIMFNRNSEHCAENF 1
           YRLGH+S DV++  +               C +CPLAKQ+R+ F+  +    + F
Sbjct: 207 YRLGHLSDDVLRIIHNNKSLHLPSNFSCKNCDICPLAKQKRLPFHTKNNLAGDCF 261