BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum23_contig00040122
         (499 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KYP63760.1 Retrovirus-related Pol polyprotein from transposon TN...    62   2e-08
KYP77073.1 Retrovirus-related Pol polyprotein from transposon TN...    61   9e-08

>KYP63760.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 573

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 2/168 (1%)
 Frame = -2

Query: 498 SRDVIFYESEFLYLASTG-STSISIQPSITVNDCTSECSETENLDDYXXXXXXXXXXXXX 322
           SRDV F+E+EF +  + G    +S+  S+ +ND T +  +  +LD+              
Sbjct: 390 SRDVEFFETEFPFTPTAGVKYDLSVDSSL-MND-TLDNDDDNDLDNDTRMGENTLNEVVV 447

Query: 321 XXXTKQPTMELSAELPHVSSSVVADYVEQSSAPNGS-DSVA*GNVVRDVDVTEELGRGKR 145
               ++ T+ L +E          + VE+ + P  + DS+    +VR   + EELGRG R
Sbjct: 448 GSEVREGTVALDSERSD-------ELVEEGNNPTPNVDSL---ELVRQSSL-EELGRGHR 496

Query: 144 DKVPSVRLKDYVTITVQKLXXXXXXXXXXXXSATRYPISYFVNYNRFS 1
            K+PSV+L++YVT T++KL            S T YPIS++++   FS
Sbjct: 497 TKLPSVKLREYVTHTIKKLSPSPSQSTSQYSSGTPYPISHYISCENFS 544


>KYP77073.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1069

 Score = 60.8 bits (146), Expect = 9e-08
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 1/167 (0%)
 Frame = -2

Query: 498 SRDVIFYESEFLYLASTGSTSISIQPSITVNDCTSECSETENLDDYXXXXXXXXXXXXXX 319
           S DV F+E+EF +  + G        S  +ND T +  +  +LD+               
Sbjct: 390 SHDVEFFETEFPFTPTVGVKYDLFVDSSLMND-TLDYDDDNDLDNDTRMGENTLNEVVVG 448

Query: 318 XXTKQPTMELSAELPHVSSSVVADYVEQSSAPNGS-DSVA*GNVVRDVDVTEELGRGKRD 142
              ++ T+ L +E          + VE+ + P  + DS+    +VR   + EELGRG R 
Sbjct: 449 SEVREGTVALDSERSD-------ELVEEGNNPTPNVDSL---ELVRQSSL-EELGRGHRT 497

Query: 141 KVPSVRLKDYVTITVQKLXXXXXXXXXXXXSATRYPISYFVNYNRFS 1
           K+PSV+L++YVT T++KL            S T YPIS++++   FS
Sbjct: 498 KLPSVKLREYVTHTIKKLSPSPSQSTSQYSSGTPYPISHYISCENFS 544