BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum23_contig00029630
         (1359 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AAC26250.1 contains similarity to reverse transcriptase (Pfam: r...   356   e-110
BAA22288.1 polyprotein [Oryza australiensis]                          345   e-104
ABA97705.1 retrotransposon protein, putative, Ty1-copia subclass...   323   8e-99
AAP44605.1 putative polyprotein [Oryza sativa Japonica Group]         329   1e-98
AAR06328.1 putative polyprotein [Oryza sativa Japonica Group]         327   2e-98
ABF97393.1 retrotransposon protein, putative, Ty1-copia subclass...   327   2e-98
ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass...   329   4e-98
AMY96445.1 gag/pol protein [Momordica dioica]                         330   4e-98
AAS01945.1 putative polyprotein [Oryza sativa Japonica Group]         326   7e-98
AAL83352.1 Putative polyprotein [Oryza sativa Japonica Group] AA...   305   9e-98
ABF97213.1 retrotransposon protein, putative, Ty1-copia subclass...   326   2e-97
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]    322   3e-95
AAV85747.1 Integrase core domain, putative [Oryza sativa Japonic...   318   2e-94
EXX50149.1 gag-pol fusion protein [Rhizophagus irregularis DAOM ...   318   6e-94
KYP68472.1 Retrovirus-related Pol polyprotein from transposon TN...   302   3e-92
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]                  308   2e-90
KRY06569.1 Retrovirus-related Pol polyprotein from transposon TN...   295   4e-90
AAP52343.2 retrotransposon protein, putative, Ty1-copia subclass...   296   5e-90
AAM74249.1 Putative retroelement [Oryza sativa Japonica Group]        296   1e-89
ADB85411.1 putative retrotransposon protein [Phyllostachys edulis]    291   2e-89

>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] CAB80804.1 putative
            retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  356 bits (914), Expect = e-110
 Identities = 171/259 (66%), Positives = 210/259 (81%)
 Frame = +1

Query: 583  RPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTA 762
            +PIE KW+FKKK D D N+  +KA L+AKG+KQVHGIDYDETYSPVAMLKSI+I+L T A
Sbjct: 484  KPIECKWIFKKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAA 543

Query: 763  FHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGLKKASRSWNL 942
             +DYEIWQMDVKTAFLNGNL+E VYM QP GFT P+  +KVCKL RSIYGLK+ASRSWNL
Sbjct: 544  HYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNL 603

Query: 943  RFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNSVKDWLCKCF 1122
            RF+E+IK+F F+RNEEE  +Y K +GS VAF++LYVDDIL++GN++ LL SVK WL  CF
Sbjct: 604  RFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCF 663

Query: 1123 SMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAPMRHEVQLNK 1302
            SMK++GEA YI+GI+I+RD  N +IGL QD+YI+KVL RF M DSKKG  PM H + L+K
Sbjct: 664  SMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSK 723

Query: 1303 SQYPTTSAKINKMKDIPKA 1359
            +Q P+T  +  +M  IP A
Sbjct: 724  TQCPSTHDERERMSKIPYA 742


>BAA22288.1 polyprotein [Oryza australiensis]
          Length = 1317

 Score =  345 bits (886), Expect = e-104
 Identities = 170/268 (63%), Positives = 212/268 (79%)
 Frame = +1

Query: 556  LLLPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKS 735
            L+ P D + + IE KW+FKKK D D NVH +KARL+AKGFKQ+ G+DYDET+SPVAMLKS
Sbjct: 829  LVDPPDGV-KTIECKWLFKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKS 887

Query: 736  IQIILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGL 915
            I+IIL   A+ DYEIWQMDVKTAFLNGNL EDVYM+QP GF  P+ P K+CKLQ+SIYGL
Sbjct: 888  IRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGL 947

Query: 916  KKASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNS 1095
            K+ASRSWN+RFDE IK F F++NEEE+ +Y KV+GS + F++LYVDDIL+IGN++ +L S
Sbjct: 948  KQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLES 1007

Query: 1096 VKDWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAP 1275
            VK  L   FSMK+LGEA YI+GI+I+RD +  LIGL Q +YI+KVL+RF M DSKKG  P
Sbjct: 1008 VKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFLP 1067

Query: 1276 MRHEVQLNKSQYPTTSAKINKMKDIPKA 1359
            M H + L+K+Q P T  + NKM  +P A
Sbjct: 1068 MSHGINLSKNQCPQTHDERNKMGMVPYA 1095


>ABA97705.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 810

 Score =  323 bits (827), Expect = 8e-99
 Identities = 160/268 (59%), Positives = 204/268 (76%)
 Frame = +1

Query: 556  LLLPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKS 735
            L+ P D + + I+ KWVFKK  D D NVH +KARL+AKGF+Q+ G+DYDET+SPVAMLKS
Sbjct: 535  LVDPPDGV-KAIKCKWVFKKNTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKS 593

Query: 736  IQIILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGL 915
            I+I+L   A+ DYEIWQMDVKTA LNGNL EDVYM QP GF  P+  KK+CKLQ+SIYGL
Sbjct: 594  IRIVLTIAAYFDYEIWQMDVKTALLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGL 653

Query: 916  KKASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNS 1095
            KKASRSWN+RFD+ +K   FV+NEEE  +Y K++GS + F++LYVD+IL+IGN++ +L S
Sbjct: 654  KKASRSWNIRFDKVVKALGFVKNEEEPCVYKKISGSALVFLILYVDEILLIGNDIPMLES 713

Query: 1096 VKDWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAP 1275
            VK  L   F MK+LGE   I+GI+I+RD +  LIGL Q +YI+KVL+RF M +SKKG  P
Sbjct: 714  VKTSLKNSFLMKDLGEPTCILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQNSKKGFLP 773

Query: 1276 MRHEVQLNKSQYPTTSAKINKMKDIPKA 1359
            M H + L K+Q P T+ + NKM  IP A
Sbjct: 774  MSHGINLGKNQCPQTTDERNKMSVIPYA 801


>AAP44605.1 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  329 bits (843), Expect = 1e-98
 Identities = 163/268 (60%), Positives = 205/268 (76%)
 Frame = +1

Query: 556  LLLPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKS 735
            L+ P D + + IE KW+FKK  D D  VH + ARL+AKGF+Q+ G+DYDET+SPVAMLKS
Sbjct: 691  LVDPPDGV-KAIECKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKS 749

Query: 736  IQIILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGL 915
            I+I+L   A+ DYEIWQMDVKTAFLNGNL EDVYM QP GF  P+  KK+CKLQ+SIY L
Sbjct: 750  IRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRL 809

Query: 916  KKASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNS 1095
            K+ASRSWN+RFDE +K   FV+NEEE  +Y K++GS + F++LYVDDIL+IGN++ +L S
Sbjct: 810  KQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLES 869

Query: 1096 VKDWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAP 1275
            VK  L   FSMK+LGEA YI+GI+I+RD +  LIGL Q +YI+KVL+RF M DSKKG  P
Sbjct: 870  VKTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLP 929

Query: 1276 MRHEVQLNKSQYPTTSAKINKMKDIPKA 1359
            M H + L K+Q P T+ + NKM  IP A
Sbjct: 930  MSHGINLGKNQCPQTTDERNKMSVIPYA 957


>AAR06328.1 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score =  327 bits (838), Expect = 2e-98
 Identities = 162/268 (60%), Positives = 206/268 (76%)
 Frame = +1

Query: 556  LLLPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKS 735
            L+ P D + + IE KWVFKKK D D NVH +KARL+AKGF+Q+ G+DYDET+SPVAMLKS
Sbjct: 749  LVDPPDGV-KAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKS 807

Query: 736  IQIILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGL 915
            I+I+L   A+ DYEIWQM+VKTAFLNGN  EDVYM QP GF   +  K +CKLQ+SIYGL
Sbjct: 808  IRIVLAIAAYFDYEIWQMEVKTAFLNGNHDEDVYMTQPKGFVDLQSAKMICKLQKSIYGL 867

Query: 916  KKASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNS 1095
            K+ASRSWN+RFDE +K   F++NEEE  +Y K++GS + F++LYVDDIL+IGN++ +L S
Sbjct: 868  KQASRSWNIRFDELVKALGFLKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLES 927

Query: 1096 VKDWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAP 1275
            VK  L   FSMK+LGEA YI+GI+I+RD +  LIGL Q +YI+K+L+RF M DSKKG  P
Sbjct: 928  VKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKMLKRFNMQDSKKGFLP 987

Query: 1276 MRHEVQLNKSQYPTTSAKINKMKDIPKA 1359
            M H + L K+Q P T+ + NKM  IP A
Sbjct: 988  MSHGINLGKNQCPQTTDERNKMSVIPYA 1015


>ABF97393.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1073

 Score =  327 bits (838), Expect = 2e-98
 Identities = 162/268 (60%), Positives = 206/268 (76%)
 Frame = +1

Query: 556  LLLPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKS 735
            L+ P D + + IE KWVFKKK D D NVH +KARL+AKGF+Q+ G+DYDET+SPVAMLKS
Sbjct: 759  LVDPPDGV-KAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKS 817

Query: 736  IQIILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGL 915
            I+I+L   A+ DYEIWQM+VKTAFLNGN  EDVYM QP GF   +  K +CKLQ+SIYGL
Sbjct: 818  IRIVLAIAAYFDYEIWQMEVKTAFLNGNHDEDVYMTQPKGFVDLQSAKMICKLQKSIYGL 877

Query: 916  KKASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNS 1095
            K+ASRSWN+RFDE +K   F++NEEE  +Y K++GS + F++LYVDDIL+IGN++ +L S
Sbjct: 878  KQASRSWNIRFDELVKALGFLKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLES 937

Query: 1096 VKDWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAP 1275
            VK  L   FSMK+LGEA YI+GI+I+RD +  LIGL Q +YI+K+L+RF M DSKKG  P
Sbjct: 938  VKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKMLKRFNMQDSKKGFLP 997

Query: 1276 MRHEVQLNKSQYPTTSAKINKMKDIPKA 1359
            M H + L K+Q P T+ + NKM  IP A
Sbjct: 998  MSHGINLGKNQCPQTTDERNKMSVIPYA 1025


>ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  329 bits (843), Expect = 4e-98
 Identities = 163/268 (60%), Positives = 205/268 (76%)
 Frame = +1

Query: 556  LLLPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKS 735
            L+ P D + + IE KW+FKK  D D  VH + ARL+AKGF+Q+ G+DYDET+SPVAMLKS
Sbjct: 778  LVDPPDGV-KAIECKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKS 836

Query: 736  IQIILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGL 915
            I+I+L   A+ DYEIWQMDVKTAFLNGNL EDVYM QP GF  P+  KK+CKLQ+SIY L
Sbjct: 837  IRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRL 896

Query: 916  KKASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNS 1095
            K+ASRSWN+RFDE +K   FV+NEEE  +Y K++GS + F++LYVDDIL+IGN++ +L S
Sbjct: 897  KQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLES 956

Query: 1096 VKDWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAP 1275
            VK  L   FSMK+LGEA YI+GI+I+RD +  LIGL Q +YI+KVL+RF M DSKKG  P
Sbjct: 957  VKTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLP 1016

Query: 1276 MRHEVQLNKSQYPTTSAKINKMKDIPKA 1359
            M H + L K+Q P T+ + NKM  IP A
Sbjct: 1017 MSHGINLGKNQCPQTTDERNKMSVIPYA 1044


>AMY96445.1 gag/pol protein [Momordica dioica]
          Length = 1313

 Score =  330 bits (845), Expect = 4e-98
 Identities = 162/264 (61%), Positives = 203/264 (76%)
 Frame = +1

Query: 562  LPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQ 741
            LPSD   +PI  KW++KKK D+D NV  FKARL+AKGF +   + Y+ET+SPVAMLKSI+
Sbjct: 858  LPSDV--KPIGCKWIYKKKRDQDSNVTVFKARLVAKGFTRSLSLSYEETFSPVAMLKSIR 915

Query: 742  IILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGLKK 921
            IIL   AF DYEIWQMDVKTAFLNGNL+E +YM+QP GF      +K CKLQ SIYGLK+
Sbjct: 916  IILAIAAFFDYEIWQMDVKTAFLNGNLEESIYMIQPEGFVAQDQEQKACKLQGSIYGLKQ 975

Query: 922  ASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNSVK 1101
            ASRSWN+RFDE IK F F++N +ES +Y K++GS VAF++LYVDDIL+IGN+VE L  VK
Sbjct: 976  ASRSWNIRFDEVIKAFGFIQNVDESCVYKKISGSVVAFLILYVDDILLIGNDVEYLEDVK 1035

Query: 1102 DWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAPMR 1281
             WL   FSMK+LGEAQYI+GI+I+RD +N  IG+ Q +YI+KVL RF+M DSKKG  P R
Sbjct: 1036 KWLNTSFSMKDLGEAQYILGIRIYRDRSNKTIGMSQSTYIDKVLSRFKMQDSKKGLLPFR 1095

Query: 1282 HEVQLNKSQYPTTSAKINKMKDIP 1353
            H + L+K Q P T  ++  M++IP
Sbjct: 1096 HGIHLSKEQCPKTPQEVEDMRNIP 1119


>AAS01945.1 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score =  326 bits (835), Expect = 7e-98
 Identities = 160/259 (61%), Positives = 199/259 (76%)
 Frame = +1

Query: 583  RPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTA 762
            R IE KW FKKK D D NVH +KARL+AKGF+Q+ G+DYDET+ PVAMLKSI+I+L   A
Sbjct: 702  RAIECKWFFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIAA 761

Query: 763  FHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGLKKASRSWNL 942
            + DYEIWQMDVKTAFLNGNL EDVYM QP GF  P+  KK+CKLQ+SIYGLK+ASRSWN+
Sbjct: 762  YFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNI 821

Query: 943  RFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNSVKDWLCKCF 1122
            RFDE +K   FV+NEE   +Y K++GS + F++LYVDDIL+IGN++ +L SV   L   F
Sbjct: 822  RFDEVVKALGFVKNEEVPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVNISLKNSF 881

Query: 1123 SMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAPMRHEVQLNK 1302
            SMK+LGEA YI+GI+I+RD +  LIGL + +YI+KVL+ F M DSKKG  PM H + LNK
Sbjct: 882  SMKDLGEAAYILGIRIYRDGSKRLIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNK 941

Query: 1303 SQYPTTSAKINKMKDIPKA 1359
            +Q   T+ + NKM  IP A
Sbjct: 942  NQCLQTTNEQNKMSVIPYA 960


>AAL83352.1 Putative polyprotein [Oryza sativa Japonica Group] AAN04499.1
            Putative polyprotein [Oryza sativa Japonica Group]
            AAP51930.1 retrotransposon protein, putative, Ty1-copia
            subclass [Oryza sativa Japonica Group]
          Length = 309

 Score =  305 bits (780), Expect = 9e-98
 Identities = 151/268 (56%), Positives = 200/268 (74%)
 Frame = +1

Query: 556  LLLPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKS 735
            LL P D + + IE KWVFKKK D D N+  +K RL+AKGF+Q+ G+DYDET+SPV MLKS
Sbjct: 16   LLDPPDGV-KAIECKWVFKKKTDVDGNIQIYKTRLVAKGFRQIQGVDYDETFSPVTMLKS 74

Query: 736  IQIILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGL 915
            IQI+L   A+ +YEIW ++VK AFLNG+L EDVYM QP GF  P+  KK+CKL +SIYGL
Sbjct: 75   IQIVLAIAAYFNYEIWLVNVKIAFLNGDLNEDVYMTQPKGFGDPQSAKKICKLHKSIYGL 134

Query: 916  KKASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNS 1095
            K+AS SW++RFDE +K   FV+NEEE  +Y K++G+ + F++LYVDDIL+IGN++ +L S
Sbjct: 135  KQASWSWDIRFDEVVKALGFVKNEEEPRVYKKISGNALVFLILYVDDILLIGNDIPMLES 194

Query: 1096 VKDWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAP 1275
            VK  L   FS+K+LGEA YI+GI+I+RD +  LIGL Q +YI+KVL+RF M DSKKG   
Sbjct: 195  VKTSLKNSFSVKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLS 254

Query: 1276 MRHEVQLNKSQYPTTSAKINKMKDIPKA 1359
            M H + L K++ P  + + +KM  IP A
Sbjct: 255  MSHGINLGKNRCPQMTDERSKMSVIPYA 282


>ABF97213.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  326 bits (835), Expect = 2e-97
 Identities = 160/259 (61%), Positives = 199/259 (76%)
 Frame = +1

Query: 583  RPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTA 762
            R IE KW FKKK D D NVH +KARL+AKGF+Q+ G+DYDET+ PVAMLKSI+I+L   A
Sbjct: 760  RAIECKWFFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIAA 819

Query: 763  FHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGLKKASRSWNL 942
            + DYEIWQMDVKTAFLNGNL EDVYM QP GF  P+  KK+CKLQ+SIYGLK+ASRSWN+
Sbjct: 820  YFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNI 879

Query: 943  RFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNSVKDWLCKCF 1122
            RFDE +K   FV+NEE   +Y K++GS + F++LYVDDIL+IGN++ +L SV   L   F
Sbjct: 880  RFDEVVKALGFVKNEEVPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVNISLKNSF 939

Query: 1123 SMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAPMRHEVQLNK 1302
            SMK+LGEA YI+GI+I+RD +  LIGL + +YI+KVL+ F M DSKKG  PM H + LNK
Sbjct: 940  SMKDLGEAAYILGIRIYRDGSKRLIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNK 999

Query: 1303 SQYPTTSAKINKMKDIPKA 1359
            +Q   T+ + NKM  IP A
Sbjct: 1000 NQCLQTTNEQNKMSVIPYA 1018


>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  322 bits (825), Expect = 3e-95
 Identities = 161/259 (62%), Positives = 199/259 (76%)
 Frame = +1

Query: 583  RPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTA 762
            + IE KW++KKK D D NVH  KARL+AKGF+QV G+DYDET+S VAMLKSI+IIL   A
Sbjct: 833  KTIECKWIYKKKIDMDGNVHIHKARLVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAA 892

Query: 763  FHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGLKKASRSWNL 942
            + DYEIWQMDVKTAFLNG L EDVYM QP GF  P    KVCKLQ+SIYGLK+ASRSWN+
Sbjct: 893  YFDYEIWQMDVKTAFLNGKLSEDVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNI 952

Query: 943  RFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNSVKDWLCKCF 1122
            RFDE IK F FV+N+EE  +Y KV+GS +  ++LYVDDIL+IGN++ +L SVK  L   F
Sbjct: 953  RFDEEIKRFGFVKNKEEPCVYMKVSGSTLVILILYVDDILLIGNDIPMLESVKASLKNSF 1012

Query: 1123 SMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAPMRHEVQLNK 1302
            SMK+LGEA YI+GIKI+RD +  LIGL Q +YI+KVL RF M ++KKG  PM H +  +K
Sbjct: 1013 SMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYIDKVLIRFNMQNTKKGFLPMSHGISPSK 1072

Query: 1303 SQYPTTSAKINKMKDIPKA 1359
            SQ P+T+ + ++M  IP A
Sbjct: 1073 SQRPSTTDERDRMNGIPYA 1091


>AAV85747.1 Integrase core domain, putative [Oryza sativa Japonica Group]
            AAX92956.1 retrotransposon protein, putative, Ty1-copia
            sub-class [Oryza sativa Japonica Group] ABA92827.2
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1184

 Score =  318 bits (815), Expect = 2e-94
 Identities = 157/250 (62%), Positives = 193/250 (77%)
 Frame = +1

Query: 610  KKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTAFHDYEIWQM 789
            KKK D D NVH +KARL+AKGF+Q+ G+DYDET+SPVAMLK I I+L   A+ DYEIWQM
Sbjct: 717  KKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKFIWIVLAIAAYFDYEIWQM 776

Query: 790  DVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGLKKASRSWNLRFDESIKDF 969
             VKTAFLNGNL EDVYM QP GF  P+  KK+CKL +SIYGLK+ASRSWN+RFDE +K  
Sbjct: 777  YVKTAFLNGNLDEDVYMTQPKGFDDPQSAKKICKLHQSIYGLKQASRSWNIRFDEVVKAL 836

Query: 970  *FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNSVKDWLCKCFSMKELGEAQ 1149
             FVRNEEE  +Y K++GS + F++LYVDDIL+IGN++ +L SVK  L   FSMK+LGEA 
Sbjct: 837  GFVRNEEEPCVYKKISGSALVFLILYVDDILLIGNDISMLESVKTSLKNSFSMKDLGEAA 896

Query: 1150 YIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAPMRHEVQLNKSQYPTTSAK 1329
            YI+GI+I+RD +  LIGL Q +YI+KVL+RF M DSKKG  PM H + L K+Q P T+ +
Sbjct: 897  YILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDE 956

Query: 1330 INKMKDIPKA 1359
             NKM  IP A
Sbjct: 957  RNKMSVIPYA 966


>EXX50149.1 gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
          Length = 1303

 Score =  318 bits (815), Expect = 6e-94
 Identities = 156/254 (61%), Positives = 194/254 (76%)
 Frame = +1

Query: 598  KWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTAFHDYE 777
            KW+FKKK D D  VH FKARL+AKGF Q  G+DYDET+SPVA +KSI+I+L   AFHDYE
Sbjct: 825  KWIFKKKTDMDGKVHTFKARLVAKGFTQTPGVDYDETFSPVAKIKSIRIMLAIAAFHDYE 884

Query: 778  IWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGLKKASRSWNLRFDES 957
            IWQMDVKTAFLNG L EDVYM QP GF   K P KVCKL+RSIYGLK+ASRSWNL F E 
Sbjct: 885  IWQMDVKTAFLNGKLTEDVYMNQPEGFVDAKYPNKVCKLERSIYGLKQASRSWNLCFHEK 944

Query: 958  IKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNSVKDWLCKCFSMKEL 1137
            +K+F F R+E+ES +Y K +GS V F++LYVDDIL++GN++  L  VK WL KCF+MK+L
Sbjct: 945  VKEFGFSRSEDESCVYVKASGSIVTFLVLYVDDILLMGNDIPTLQDVKAWLGKCFAMKDL 1004

Query: 1138 GEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAPMRHEVQLNKSQYPT 1317
            GEA YI+GI+I RD    LIGL Q +Y+ KVL+RF M +SKKG  P++   +L+K+Q P+
Sbjct: 1005 GEAAYILGIRILRDRKKRLIGLSQGTYLEKVLKRFSMENSKKGELPIQSNAKLSKTQSPS 1064

Query: 1318 TSAKINKMKDIPKA 1359
            T  +I +M  +P A
Sbjct: 1065 TDEEIAEMSRVPYA 1078


>KYP68472.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 676

 Score =  302 bits (773), Expect = 3e-92
 Identities = 150/273 (54%), Positives = 200/273 (73%)
 Frame = +1

Query: 541  IVKVILLLPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPV 720
            I KV  L+ +    +PI  KWV+KKK   D  V  +KARL+AKG++Q  GIDYDET+SP+
Sbjct: 369  INKVWTLVEASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPM 428

Query: 721  AMLKSIQIILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQR 900
            AMLKSI+I+L   A++DYEIWQMDVKT FLNG LKEDVYM QP GF       KVCKL+R
Sbjct: 429  AMLKSIRILLAIAAYYDYEIWQMDVKTTFLNGELKEDVYMTQPEGFITSSDHHKVCKLER 488

Query: 901  SIYGLKKASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNV 1080
            SIYGLK+ASRSWN++F+++IK+F FVR EEE  +Y +V+GS + F++LYVDDIL+IGN++
Sbjct: 489  SIYGLKQASRSWNIQFNKTIKNFDFVRCEEEPCVYKRVSGSTIIFLMLYVDDILLIGNDI 548

Query: 1081 ELLNSVKDWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSK 1260
              L S K WL + FSMK+LGEA YI+GIKI+RD +  ++GL Q  YIN +L+R+ M +SK
Sbjct: 549  PSLQSTKIWLSEQFSMKDLGEAAYILGIKIYRDRSKRMLGLSQSMYINTILKRYNMENSK 608

Query: 1261 KGHAPMRHEVQLNKSQYPTTSAKINKMKDIPKA 1359
            +G+ P+   V L++   P T  +  +M  +P A
Sbjct: 609  RGYLPIGTGVTLSREDCPKTLEERTRMNRVPYA 641


>ADJ18449.1 gag/pol protein, partial [Bryonia dioica]
          Length = 1292

 Score =  308 bits (789), Expect = 2e-90
 Identities = 151/264 (57%), Positives = 197/264 (74%)
 Frame = +1

Query: 562  LPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQ 741
            LPSD   +PI  KW++K+K D+   V  FKARL+AKG+ Q  G+DY+ET+SPVAMLKSI+
Sbjct: 842  LPSDV--KPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGVDYEETFSPVAMLKSIR 899

Query: 742  IILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGLKK 921
            I+L    F++YEIWQMDVKTAFLNGNL+E +YMVQP GF      +KVCKLQ+SIYGLK+
Sbjct: 900  ILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQ 959

Query: 922  ASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNSVK 1101
            ASRSWN+RFD +IK + F +N +E  +Y K+  S VAF++LYVDDIL+IGN+VE L  VK
Sbjct: 960  ASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVK 1019

Query: 1102 DWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAPMR 1281
             WL   F MK+LGEAQYI+GI+I R+  N  + + Q SYI+KVL R++M +SKKG  P R
Sbjct: 1020 KWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFR 1079

Query: 1282 HEVQLNKSQYPTTSAKINKMKDIP 1353
            H + L+K Q P T  ++  M++IP
Sbjct: 1080 HGIHLSKEQCPKTPQEVEDMRNIP 1103


>KRY06569.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trichinella patagoniensis]
          Length = 618

 Score =  295 bits (755), Expect = 4e-90
 Identities = 151/266 (56%), Positives = 199/266 (74%)
 Frame = +1

Query: 562  LPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQ 741
            LP D   + IE KW+FK+K + D +V  +KAR++ KG      +DYDET+ PVAM KS++
Sbjct: 310  LPDDR--QAIENKWIFKRKTNADSSVTIYKARIVGKG------VDYDETFKPVAMHKSVR 361

Query: 742  IILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGLKK 921
            ++L   AF+DYEIWQMDVKTAFLNG +KE++YM+QP GF  PKG  KVCKLQRSIYGL +
Sbjct: 362  VMLAIAAFYDYEIWQMDVKTAFLNGFIKEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQ 421

Query: 922  ASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNSVK 1101
            AS SWN RFD  IK F F++   E+ IY KV+GS VAF++LYVDDIL+IGN++E L+S+K
Sbjct: 422  ASWSWNKRFDSVIKAFGFIQTFGEACIYKKVSGSSVAFLILYVDDILLIGNDIEFLDSIK 481

Query: 1102 DWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAPMR 1281
             +L K FSMK+LGEA YI+GIKI+RD +  LIGL Q +Y++KVL++F+M  +KKG  P+ 
Sbjct: 482  GYLNKSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKVLKKFKMDQAKKGFLPVL 541

Query: 1282 HEVQLNKSQYPTTSAKINKMKDIPKA 1359
              V+L+ +Q PTT+    KMK IP A
Sbjct: 542  QGVKLSTTQSPTTAEDREKMKVIPYA 567


>AAP52343.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 655

 Score =  296 bits (757), Expect = 5e-90
 Identities = 145/224 (64%), Positives = 180/224 (80%)
 Frame = +1

Query: 556  LLLPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKS 735
            L+ P D + + IE KWVFKKK D D NVH +KARL+AKGF+Q+ G++YDET+SPVAMLKS
Sbjct: 338  LVDPLDSV-KAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKS 396

Query: 736  IQIILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGL 915
            I+I+L   A+ DYEIWQMDVKTAFL+GNL EDVYM QP GF  P+  KK+CKLQ+SIYGL
Sbjct: 397  IRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGL 456

Query: 916  KKASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNS 1095
            K+ASRSWN+RFDE IK   FV+NEEE  +Y K+NGS + F++LYVDDIL+IGN++ +L S
Sbjct: 457  KQASRSWNIRFDEVIKALGFVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIPMLES 516

Query: 1096 VKDWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINK 1227
            VK  L   FSMK+LGEA YI+GI+I+RD +  LIGL Q +YINK
Sbjct: 517  VKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYINK 560


>AAM74249.1 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  296 bits (757), Expect = 1e-89
 Identities = 145/224 (64%), Positives = 180/224 (80%)
 Frame = +1

Query: 556  LLLPSDFICRPIEYKWVFKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKS 735
            L+ P D + + IE KWVFKKK D D NVH +KARL+AKGF+Q+ G++YDET+SPVAMLKS
Sbjct: 383  LVDPLDSV-KAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKS 441

Query: 736  IQIILITTAFHDYEIWQMDVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGL 915
            I+I+L   A+ DYEIWQMDVKTAFL+GNL EDVYM QP GF  P+  KK+CKLQ+SIYGL
Sbjct: 442  IRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGL 501

Query: 916  KKASRSWNLRFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNS 1095
            K+ASRSWN+RFDE IK   FV+NEEE  +Y K+NGS + F++LYVDDIL+IGN++ +L S
Sbjct: 502  KQASRSWNIRFDEVIKALGFVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIPMLES 561

Query: 1096 VKDWLCKCFSMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINK 1227
            VK  L   FSMK+LGEA YI+GI+I+RD +  LIGL Q +YINK
Sbjct: 562  VKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYINK 605


>ADB85411.1 putative retrotransposon protein [Phyllostachys edulis]
          Length = 566

 Score =  291 bits (746), Expect = 2e-89
 Identities = 147/250 (58%), Positives = 185/250 (74%)
 Frame = +1

Query: 610  KKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTAFHDYEIWQM 789
            +K  D D NVH  KARL+AKGFKQ+  +DYDE +SPVAML+SI IIL   A+ DYEIWQM
Sbjct: 307  RKTIDMDENVHVHKARLVAKGFKQIQCVDYDEAFSPVAMLESIPIILAIAAYFDYEIWQM 366

Query: 790  DVKTAFLNGNLKEDVYMVQPPGFTCPKGPKKVCKLQRSIYGLKKASRSWNLRFDESIKDF 969
            DVK AFLNGNL EDVYM QP  F   K  +KVCKL +SIYGLK+ASRSWN+RFDE +K F
Sbjct: 367  DVKMAFLNGNLSEDVYMTQPESFVDLKEARKVCKLNKSIYGLKQASRSWNIRFDEVVKGF 426

Query: 970  *FVRNEEES*IYNKVNGSYVAFILLYVDDILIIGNNVELLNSVKDWLCKCFSMKELGEAQ 1149
             F++NEEE  +Y KV+GS + F++LYVDDIL++ N++ +L SVK  L   FS+K+LG+A 
Sbjct: 427  DFIKNEEEPCVYKKVSGSKLVFLILYVDDILLVENDIPMLESVKTSLRNSFSIKDLGDAS 486

Query: 1150 YIIGIKIHRD*ANWLIGLCQDSYINKVLQRFRMVDSKKGHAPMRHEVQLNKSQYPTTSAK 1329
            YI+GI+I+RD +  LIGL QD YI+KVL+RF M DSK G   M H + L+KSQ  +T  +
Sbjct: 487  YILGIRIYRDRSKRLIGLSQDMYIDKVLKRFNMQDSKNGFLLMAHGINLSKSQCSSTIDE 546

Query: 1330 INKMKDIPKA 1359
             +KM  I  A
Sbjct: 547  RDKMSRITYA 556